Wall clock time and date at job start Wed Apr 1 2020 05:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.53743 * 2 1 4 4 C 1.53040 * 109.50653 * 239.90432 * 2 1 3 5 5 N 1.46853 * 109.52104 * 299.23858 * 4 2 1 6 6 C 1.46894 * 110.99950 * 174.15822 * 5 4 2 7 7 C 1.50701 * 109.47086 * 190.00068 * 6 5 4 8 8 O 1.21288 * 120.00086 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99964 * 180.02562 * 7 6 5 10 10 C 1.37101 * 119.99869 * 180.02562 * 9 7 6 11 11 H 1.07993 * 120.00181 * 359.97438 * 10 9 7 12 12 C 1.38956 * 119.99909 * 179.97438 * 10 9 7 13 13 N 1.31412 * 119.99614 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 120.00047 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.47002 * 90.00279 * 14 12 10 16 16 H 1.48497 * 109.47438 * 210.00302 * 14 12 10 17 17 H 1.48499 * 109.47061 * 330.00795 * 14 12 10 18 18 C 1.46848 * 111.19804 * 298.25991 * 5 4 2 19 19 C 1.53043 * 109.57534 * 61.70661 * 18 5 4 20 20 C 1.53110 * 109.50421 * 120.10067 * 2 1 3 21 21 H 1.09002 * 109.52690 * 182.25743 * 20 2 1 22 22 N 1.46506 * 109.52293 * 302.38369 * 20 2 1 23 23 C 1.34777 * 119.99996 * 204.87449 * 22 20 2 24 24 O 1.21610 * 120.00255 * 359.97438 * 23 22 20 25 25 C 1.43205 * 119.99792 * 179.97438 * 23 22 20 26 26 C 5.84228 * 86.91431 * 80.21751 * 2 1 3 27 27 C 7.19550 * 83.21063 * 76.66528 * 2 1 3 28 28 C 1.53001 * 117.49815 * 198.88145 * 27 26 25 29 29 C 1.52999 * 59.99986 * 252.51440 * 28 27 26 30 30 H 1.08999 * 109.47436 * 299.90540 * 1 2 3 31 31 H 1.09005 * 109.46902 * 59.90089 * 1 2 3 32 32 H 1.09002 * 109.47153 * 179.89757 * 1 2 3 33 33 H 1.08995 * 109.47375 * 180.09477 * 3 2 1 34 34 H 1.08997 * 109.47151 * 300.09903 * 3 2 1 35 35 H 1.09001 * 109.46973 * 60.09575 * 3 2 1 36 36 H 1.09004 * 109.46075 * 59.25128 * 4 2 1 37 37 H 1.08992 * 109.46394 * 179.23545 * 4 2 1 38 38 H 1.08997 * 109.47284 * 310.00059 * 6 5 4 39 39 H 1.09002 * 109.47427 * 70.00180 * 6 5 4 40 40 H 0.96998 * 120.00061 * 359.97438 * 9 7 6 41 41 H 0.97006 * 119.99189 * 179.97438 * 13 12 10 42 42 H 1.08998 * 109.45911 * 181.76211 * 18 5 4 43 43 H 1.09001 * 109.45723 * 301.73371 * 18 5 4 44 44 H 1.09001 * 109.55217 * 180.94452 * 19 18 5 45 45 H 1.09004 * 109.44979 * 60.82954 * 19 18 5 46 46 H 0.96996 * 120.00117 * 24.87077 * 22 20 2 47 47 H 1.09004 * 115.54856 * 344.59222 * 27 26 25 48 48 H 1.09004 * 117.49834 * 359.97438 * 28 27 26 49 49 H 1.08995 * 117.49577 * 145.02330 * 28 27 26 50 50 H 1.09004 * 117.49789 * 252.51625 * 29 28 27 51 51 H 1.08998 * 117.52032 * 107.48340 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0416 1.4419 0.0000 4 6 2.0410 -0.7234 -1.2481 5 7 1.5676 -2.1135 -1.2380 6 6 1.9223 -2.7995 -2.4875 7 6 1.2171 -4.1299 -2.5478 8 8 0.4901 -4.4727 -1.6394 9 7 1.3943 -4.9389 -3.6111 10 6 0.7523 -6.1491 -3.6662 11 1 0.1050 -6.4543 -2.8574 12 6 0.9345 -6.9830 -4.7627 13 7 1.7225 -6.6118 -5.7466 14 14 0.0603 -8.6321 -4.8374 15 1 -1.2587 -8.4636 -5.4984 16 1 0.8836 -9.5940 -5.6134 17 1 -0.1389 -9.1496 -3.4598 18 6 2.0846 -2.8420 -0.0724 19 6 1.5762 -2.1822 1.2115 20 6 2.0412 -0.7238 1.2486 21 1 3.1304 -0.6892 1.2695 22 7 1.5075 -0.0703 2.4463 23 6 2.1648 -0.1714 3.6186 24 8 3.2005 -0.8055 3.6824 25 6 1.6434 0.4679 4.7892 26 6 1.2155 0.9912 5.7490 27 6 0.6793 1.6479 6.9524 28 6 -0.3456 0.8728 7.7829 29 6 -0.7928 2.0642 6.9334 30 1 -0.3634 0.5123 0.8908 31 1 -0.3633 0.5154 -0.8891 32 1 -0.3633 -1.0277 -0.0018 33 1 3.1316 1.4407 -0.0017 34 1 1.6775 1.9567 -0.8891 35 1 1.6803 1.9557 0.8909 36 1 1.6670 -0.2188 -2.1390 37 1 3.1308 -0.7111 -1.2543 38 1 1.6177 -2.1880 -3.3368 39 1 3.0003 -2.9578 -2.5218 40 1 1.9754 -4.6647 -4.3377 41 1 1.8500 -7.1941 -6.5118 42 1 1.7423 -3.8762 -0.1096 43 1 3.1743 -2.8194 -0.0842 44 1 1.9737 -2.7131 2.0765 45 1 0.4869 -2.2176 1.2310 46 1 0.6812 0.4352 2.3956 47 1 1.3776 2.2918 7.4872 48 1 -0.6232 -0.1232 7.4379 49 1 -0.3217 1.0066 8.8643 50 1 -1.0631 2.9818 7.4561 51 1 -1.3642 1.8522 6.0297 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724968328.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:48 Heat of formation + Delta-G solvation = 8.783138 kcal Electronic energy + Delta-G solvation = -30272.027643 eV Core-core repulsion = 26173.561728 eV Total energy + Delta-G solvation = -4098.465915 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.65827 -39.07682 -38.08803 -37.89091 -35.31171 -33.89797 -33.46238 -32.97950 -31.45445 -31.01306 -27.58149 -27.37725 -26.60312 -25.25168 -24.32370 -23.06932 -22.97103 -21.71863 -21.39658 -19.53841 -19.12814 -18.22034 -17.80909 -17.05068 -16.52681 -15.98128 -15.63340 -15.42447 -15.14824 -14.83621 -14.78975 -14.45644 -14.17043 -13.96756 -13.83121 -13.51318 -13.28404 -13.09230 -13.03603 -12.51212 -12.34535 -12.18949 -12.10058 -12.01203 -11.77319 -11.71006 -11.54376 -11.34769 -11.29973 -11.14258 -11.02473 -10.84393 -10.58585 -10.51471 -10.47991 -10.38071 -10.25686 -10.18874 -10.11197 -9.46672 -9.15383 -8.40118 -7.95231 -7.80173 -6.39837 -3.80353 1.26798 1.86427 2.79006 3.16026 3.19084 3.27673 3.33461 3.51598 3.78858 3.92497 3.98359 4.22822 4.25342 4.39686 4.42179 4.55403 4.73401 4.79092 5.02203 5.05123 5.06696 5.21269 5.26890 5.28080 5.30925 5.40620 5.46862 5.48999 5.52041 5.52962 5.56465 5.67477 5.77447 5.78722 5.83767 5.90660 5.96114 5.99665 6.05968 6.14427 6.22917 6.31242 6.37025 6.55839 6.58791 6.88672 7.22926 7.32849 7.44501 7.57154 7.93026 8.08744 8.64142 9.20355 9.57029 10.08869 10.77922 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017501 B = 0.001925 C = 0.001827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.523920 B =14544.517977 C =15325.061487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.065 4.065 3 C -0.141 4.141 4 C 0.067 3.933 5 N -0.512 5.512 6 C 0.047 3.953 7 C 0.445 3.555 8 O -0.577 6.577 9 N -0.565 5.565 10 C -0.298 4.298 11 H 0.103 0.897 12 C 0.022 3.978 13 N -0.902 5.902 14 Si 0.929 3.071 15 H -0.278 1.278 16 H -0.284 1.284 17 H -0.270 1.270 18 C 0.055 3.945 19 C -0.123 4.123 20 C 0.155 3.845 21 H 0.088 0.912 22 N -0.707 5.707 23 C 0.632 3.368 24 O -0.522 6.522 25 C -0.214 4.214 26 C -0.057 4.057 27 C -0.066 4.066 28 C -0.159 4.159 29 C -0.160 4.160 30 H 0.041 0.959 31 H 0.057 0.943 32 H 0.082 0.918 33 H 0.055 0.945 34 H 0.060 0.940 35 H 0.055 0.945 36 H 0.079 0.921 37 H 0.033 0.967 38 H 0.088 0.912 39 H 0.047 0.953 40 H 0.392 0.608 41 H 0.271 0.729 42 H 0.108 0.892 43 H 0.024 0.976 44 H 0.069 0.931 45 H 0.079 0.921 46 H 0.402 0.598 47 H 0.135 0.865 48 H 0.102 0.898 49 H 0.109 0.891 50 H 0.108 0.892 51 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.577 21.013 18.214 27.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.066 4.066 3 C -0.199 4.199 4 C -0.061 4.061 5 N -0.237 5.237 6 C -0.085 4.085 7 C 0.230 3.770 8 O -0.461 6.461 9 N -0.202 5.202 10 C -0.427 4.427 11 H 0.121 0.879 12 C -0.180 4.180 13 N -0.544 5.544 14 Si 0.757 3.243 15 H -0.204 1.204 16 H -0.210 1.210 17 H -0.195 1.195 18 C -0.073 4.073 19 C -0.162 4.162 20 C 0.051 3.949 21 H 0.106 0.894 22 N -0.358 5.358 23 C 0.418 3.582 24 O -0.399 6.399 25 C -0.217 4.217 26 C -0.060 4.060 27 C -0.084 4.084 28 C -0.196 4.196 29 C -0.197 4.197 30 H 0.060 0.940 31 H 0.077 0.923 32 H 0.101 0.899 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.098 0.902 37 H 0.051 0.949 38 H 0.106 0.894 39 H 0.065 0.935 40 H 0.225 0.775 41 H 0.081 0.919 42 H 0.126 0.874 43 H 0.042 0.958 44 H 0.087 0.913 45 H 0.097 0.903 46 H 0.238 0.762 47 H 0.153 0.847 48 H 0.120 0.880 49 H 0.127 0.873 50 H 0.127 0.873 51 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -1.773 20.206 18.693 27.583 hybrid contribution 0.577 -0.372 -0.729 1.001 sum -1.197 19.834 17.964 26.786 Atomic orbital electron populations 1.21844 0.93222 1.03875 1.00500 1.20810 0.97288 0.94729 0.93804 1.21859 1.01105 0.95003 1.01934 1.22114 0.97151 0.89706 0.97179 1.61502 1.59800 1.00577 1.01785 1.21827 0.98084 0.95865 0.92696 1.19740 0.86521 0.86118 0.84628 1.90481 1.41564 1.75609 1.38429 1.41871 1.42717 1.16918 1.18656 1.19689 1.24537 0.93177 1.05315 0.87935 1.25253 0.97363 1.00022 0.95340 1.69617 1.37464 1.38394 1.08877 0.85868 0.78863 0.81148 0.78465 1.20446 1.20979 1.19456 1.22217 0.95903 1.00657 0.88482 1.21984 1.02564 0.93808 0.97855 1.21209 0.99022 0.92363 0.82309 0.89433 1.46012 1.27480 1.54020 1.08325 1.14665 0.83367 0.79505 0.80652 1.90874 1.23075 1.41011 1.84912 1.20715 1.01654 1.02440 0.96881 1.21331 0.96420 0.94264 0.93949 1.18914 0.92993 1.03372 0.93126 1.23120 1.00499 0.97422 0.98580 1.23121 0.93977 0.99723 1.02859 0.94018 0.92348 0.89934 0.92604 0.92073 0.92567 0.90225 0.94913 0.89354 0.93475 0.77520 0.91928 0.87423 0.95798 0.91262 0.90277 0.76161 0.84690 0.87983 0.87308 0.87350 0.88006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 7.84 37.16 0.29 -1.15 16 2 C -0.07 -0.69 0.57 -154.43 -0.09 -0.78 16 3 C -0.14 -1.22 8.35 37.16 0.31 -0.91 16 4 C 0.07 0.83 4.18 -3.83 -0.02 0.81 16 5 N -0.51 -8.16 3.68 -236.11 -0.87 -9.02 16 6 C 0.05 0.81 5.45 -4.98 -0.03 0.79 16 7 C 0.44 10.30 7.46 -10.98 -0.08 10.22 16 8 O -0.58 -15.16 13.90 5.55 0.08 -15.09 16 9 N -0.56 -14.19 5.29 -10.96 -0.06 -14.25 16 10 C -0.30 -8.25 9.68 -14.93 -0.14 -8.40 16 11 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 12 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 13 N -0.90 -24.53 13.05 55.50 0.72 -23.81 16 14 Si 0.93 21.11 29.55 -169.99 -5.02 16.09 16 15 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 16 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 17 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 18 C 0.06 0.92 5.10 -3.83 -0.02 0.90 16 19 C -0.12 -1.77 5.32 -26.65 -0.14 -1.91 16 20 C 0.15 1.87 1.63 -67.81 -0.11 1.76 16 21 H 0.09 1.19 7.58 -51.93 -0.39 0.80 16 22 N -0.71 -7.66 4.36 -56.13 -0.24 -7.90 16 23 C 0.63 8.33 7.62 -14.33 -0.11 8.22 16 24 O -0.52 -8.83 16.75 5.27 0.09 -8.75 16 25 C -0.21 -2.48 13.61 -38.84 -0.53 -3.01 16 26 C -0.06 -0.55 13.47 -37.12 -0.50 -1.05 16 27 C -0.07 -0.40 6.22 -93.40 -0.58 -0.98 16 28 C -0.16 -0.77 10.21 -26.73 -0.27 -1.04 16 29 C -0.16 -0.70 10.21 -26.73 -0.27 -0.97 16 30 H 0.04 0.35 6.41 -51.93 -0.33 0.02 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.08 1.10 6.02 -51.93 -0.31 0.78 16 33 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.45 7.62 -51.93 -0.40 0.05 16 36 H 0.08 0.90 8.02 -51.93 -0.42 0.49 16 37 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.09 1.38 7.99 -51.93 -0.41 0.97 16 39 H 0.05 0.77 8.12 -51.93 -0.42 0.35 16 40 H 0.39 9.44 7.90 -40.82 -0.32 9.12 16 41 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 42 H 0.11 2.17 5.78 -51.93 -0.30 1.87 16 43 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.08 1.17 6.59 -51.93 -0.34 0.83 16 46 H 0.40 3.47 6.63 -40.82 -0.27 3.20 16 47 H 0.14 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 49 H 0.11 0.33 8.14 -51.93 -0.42 -0.09 16 50 H 0.11 0.28 8.14 -51.93 -0.42 -0.14 16 51 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 LS Contribution 413.99 15.07 6.24 6.24 Total: -1.00 -32.77 413.99 -9.54 -42.31 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: -8.08 Total: 11.20 kcal Atomic # 6 Polarization: 5.36 SS G_CDS: -2.39 Total: 2.98 kcal Atomic # 7 Polarization: -54.54 SS G_CDS: -0.45 Total: -54.99 kcal Atomic # 8 Polarization: -24.00 SS G_CDS: 0.17 Total: -23.83 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -32.77 -9.54 -42.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724968328.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.096 kcal (2) G-P(sol) polarization free energy of solvation -32.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds