Wall clock time and date at job start Wed Apr 1 2020 05:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.53743 * 2 1 4 4 C 1.53040 * 109.50653 * 239.90432 * 2 1 3 5 5 N 1.46853 * 109.52104 * 299.23858 * 4 2 1 6 6 C 1.46894 * 110.99950 * 174.15822 * 5 4 2 7 7 C 1.50701 * 109.47086 * 190.00068 * 6 5 4 8 8 O 1.21288 * 120.00086 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99964 * 180.02562 * 7 6 5 10 10 C 1.37101 * 119.99869 * 180.02562 * 9 7 6 11 11 H 1.07993 * 120.00181 * 359.97438 * 10 9 7 12 12 C 1.38956 * 119.99909 * 179.97438 * 10 9 7 13 13 N 1.31412 * 119.99614 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 120.00047 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.47002 * 90.00279 * 14 12 10 16 16 H 1.48497 * 109.47438 * 210.00302 * 14 12 10 17 17 H 1.48499 * 109.47061 * 330.00795 * 14 12 10 18 18 C 1.46848 * 111.19804 * 298.25991 * 5 4 2 19 19 C 1.53043 * 109.57534 * 61.70661 * 18 5 4 20 20 C 1.53110 * 109.50421 * 120.10067 * 2 1 3 21 21 H 1.09002 * 109.52690 * 182.25743 * 20 2 1 22 22 N 1.46506 * 109.52293 * 302.38369 * 20 2 1 23 23 C 1.34777 * 119.99996 * 204.87449 * 22 20 2 24 24 O 1.21610 * 120.00255 * 359.97438 * 23 22 20 25 25 C 1.43205 * 119.99792 * 179.97438 * 23 22 20 26 26 C 5.84228 * 86.91431 * 80.21751 * 2 1 3 27 27 C 7.19550 * 83.21063 * 76.66528 * 2 1 3 28 28 C 1.53001 * 117.49815 * 198.88145 * 27 26 25 29 29 C 1.52999 * 59.99986 * 252.51440 * 28 27 26 30 30 H 1.08999 * 109.47436 * 299.90540 * 1 2 3 31 31 H 1.09005 * 109.46902 * 59.90089 * 1 2 3 32 32 H 1.09002 * 109.47153 * 179.89757 * 1 2 3 33 33 H 1.08995 * 109.47375 * 180.09477 * 3 2 1 34 34 H 1.08997 * 109.47151 * 300.09903 * 3 2 1 35 35 H 1.09001 * 109.46973 * 60.09575 * 3 2 1 36 36 H 1.09004 * 109.46075 * 59.25128 * 4 2 1 37 37 H 1.08992 * 109.46394 * 179.23545 * 4 2 1 38 38 H 1.08997 * 109.47284 * 310.00059 * 6 5 4 39 39 H 1.09002 * 109.47427 * 70.00180 * 6 5 4 40 40 H 0.96998 * 120.00061 * 359.97438 * 9 7 6 41 41 H 0.97006 * 119.99189 * 179.97438 * 13 12 10 42 42 H 1.08998 * 109.45911 * 181.76211 * 18 5 4 43 43 H 1.09001 * 109.45723 * 301.73371 * 18 5 4 44 44 H 1.09001 * 109.55217 * 180.94452 * 19 18 5 45 45 H 1.09004 * 109.44979 * 60.82954 * 19 18 5 46 46 H 0.96996 * 120.00117 * 24.87077 * 22 20 2 47 47 H 1.09004 * 115.54856 * 344.59222 * 27 26 25 48 48 H 1.09004 * 117.49834 * 359.97438 * 28 27 26 49 49 H 1.08995 * 117.49577 * 145.02330 * 28 27 26 50 50 H 1.09004 * 117.49789 * 252.51625 * 29 28 27 51 51 H 1.08998 * 117.52032 * 107.48340 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0416 1.4419 0.0000 4 6 2.0410 -0.7234 -1.2481 5 7 1.5676 -2.1135 -1.2380 6 6 1.9223 -2.7995 -2.4875 7 6 1.2171 -4.1299 -2.5478 8 8 0.4901 -4.4727 -1.6394 9 7 1.3943 -4.9389 -3.6111 10 6 0.7523 -6.1491 -3.6662 11 1 0.1050 -6.4543 -2.8574 12 6 0.9345 -6.9830 -4.7627 13 7 1.7225 -6.6118 -5.7466 14 14 0.0603 -8.6321 -4.8374 15 1 -1.2587 -8.4636 -5.4984 16 1 0.8836 -9.5940 -5.6134 17 1 -0.1389 -9.1496 -3.4598 18 6 2.0846 -2.8420 -0.0724 19 6 1.5762 -2.1822 1.2115 20 6 2.0412 -0.7238 1.2486 21 1 3.1304 -0.6892 1.2695 22 7 1.5075 -0.0703 2.4463 23 6 2.1648 -0.1714 3.6186 24 8 3.2005 -0.8055 3.6824 25 6 1.6434 0.4679 4.7892 26 6 1.2155 0.9912 5.7490 27 6 0.6793 1.6479 6.9524 28 6 -0.3456 0.8728 7.7829 29 6 -0.7928 2.0642 6.9334 30 1 -0.3634 0.5123 0.8908 31 1 -0.3633 0.5154 -0.8891 32 1 -0.3633 -1.0277 -0.0018 33 1 3.1316 1.4407 -0.0017 34 1 1.6775 1.9567 -0.8891 35 1 1.6803 1.9557 0.8909 36 1 1.6670 -0.2188 -2.1390 37 1 3.1308 -0.7111 -1.2543 38 1 1.6177 -2.1880 -3.3368 39 1 3.0003 -2.9578 -2.5218 40 1 1.9754 -4.6647 -4.3377 41 1 1.8500 -7.1941 -6.5118 42 1 1.7423 -3.8762 -0.1096 43 1 3.1743 -2.8194 -0.0842 44 1 1.9737 -2.7131 2.0765 45 1 0.4869 -2.2176 1.2310 46 1 0.6812 0.4352 2.3956 47 1 1.3776 2.2918 7.4872 48 1 -0.6232 -0.1232 7.4379 49 1 -0.3217 1.0066 8.8643 50 1 -1.0631 2.9818 7.4561 51 1 -1.3642 1.8522 6.0297 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724968328.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:47 Heat of formation + Delta-G solvation = -12.818318 kcal Electronic energy + Delta-G solvation = -30272.964352 eV Core-core repulsion = 26173.561728 eV Total energy + Delta-G solvation = -4099.402624 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.73188 -40.42716 -39.49808 -38.50588 -36.63393 -35.77089 -34.53352 -33.81992 -33.28562 -32.39674 -29.02189 -28.18617 -27.59905 -26.69862 -25.59957 -24.08631 -23.29848 -22.75527 -22.52000 -20.93836 -20.49529 -19.84151 -19.18002 -17.81479 -17.61618 -17.42221 -16.71695 -16.51786 -16.48695 -16.16478 -15.92922 -15.69932 -15.51114 -15.39788 -15.09654 -14.96232 -14.43276 -14.20596 -13.93551 -13.54432 -13.48544 -13.26606 -13.14979 -12.93649 -12.85335 -12.73835 -12.58196 -12.46831 -12.42643 -12.40135 -12.37943 -12.25805 -12.12162 -11.80471 -11.62108 -11.56679 -11.42159 -11.29842 -11.12653 -10.74322 -10.32015 -10.12788 -9.96625 -9.16887 -8.45042 -5.93047 0.38169 1.08823 1.37910 1.41342 1.53857 1.90253 2.08517 2.28899 2.32110 2.74554 2.96876 3.10539 3.22003 3.38139 3.51133 3.75133 3.81897 3.83606 3.99369 4.02295 4.11500 4.21173 4.28486 4.36926 4.39905 4.41920 4.47829 4.55041 4.65924 4.69181 4.75700 4.76830 4.83977 4.84746 4.96427 5.02904 5.03861 5.07933 5.09127 5.13627 5.21114 5.23302 5.32315 5.35300 5.42552 5.61812 5.90353 6.08533 6.09755 6.24139 6.31554 6.63204 6.96430 7.15376 7.59549 8.15716 8.72364 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017501 B = 0.001925 C = 0.001827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.523920 B =14544.517977 C =15325.061487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.057 4.057 3 C -0.135 4.135 4 C 0.065 3.935 5 N -0.522 5.522 6 C 0.058 3.942 7 C 0.442 3.558 8 O -0.612 6.612 9 N -0.576 5.576 10 C -0.330 4.330 11 H 0.078 0.922 12 C -0.014 4.014 13 N -0.921 5.921 14 Si 0.991 3.009 15 H -0.271 1.271 16 H -0.272 1.272 17 H -0.275 1.275 18 C 0.062 3.938 19 C -0.114 4.114 20 C 0.163 3.837 21 H 0.075 0.925 22 N -0.690 5.690 23 C 0.634 3.366 24 O -0.569 6.569 25 C -0.266 4.266 26 C -0.023 4.023 27 C -0.089 4.089 28 C -0.157 4.157 29 C -0.146 4.146 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.050 0.950 33 H 0.054 0.946 34 H 0.077 0.923 35 H 0.065 0.935 36 H 0.099 0.901 37 H 0.041 0.959 38 H 0.115 0.885 39 H 0.063 0.937 40 H 0.396 0.604 41 H 0.277 0.723 42 H 0.065 0.935 43 H 0.027 0.973 44 H 0.053 0.947 45 H 0.072 0.928 46 H 0.415 0.585 47 H 0.157 0.843 48 H 0.089 0.911 49 H 0.131 0.869 50 H 0.133 0.867 51 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.329 23.727 18.804 30.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.058 4.058 3 C -0.193 4.193 4 C -0.063 4.063 5 N -0.247 5.247 6 C -0.073 4.073 7 C 0.230 3.770 8 O -0.498 6.498 9 N -0.213 5.213 10 C -0.460 4.460 11 H 0.096 0.904 12 C -0.213 4.213 13 N -0.562 5.562 14 Si 0.815 3.185 15 H -0.196 1.196 16 H -0.196 1.196 17 H -0.200 1.200 18 C -0.067 4.067 19 C -0.153 4.153 20 C 0.058 3.942 21 H 0.094 0.906 22 N -0.341 5.341 23 C 0.422 3.578 24 O -0.450 6.450 25 C -0.269 4.269 26 C -0.026 4.026 27 C -0.106 4.106 28 C -0.194 4.194 29 C -0.183 4.183 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.096 0.904 35 H 0.084 0.916 36 H 0.117 0.883 37 H 0.059 0.941 38 H 0.133 0.867 39 H 0.081 0.919 40 H 0.229 0.771 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.045 0.955 44 H 0.072 0.928 45 H 0.091 0.909 46 H 0.254 0.746 47 H 0.175 0.825 48 H 0.108 0.892 49 H 0.149 0.851 50 H 0.151 0.849 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.546 22.965 19.264 30.083 hybrid contribution 0.758 -1.165 -0.797 1.603 sum -1.788 21.800 18.466 28.626 Atomic orbital electron populations 1.21798 0.92883 1.02301 1.02139 1.20778 0.97422 0.95746 0.91869 1.21817 1.01069 0.93139 1.03269 1.22286 0.97817 0.87347 0.98869 1.61466 1.60433 1.02138 1.00629 1.21723 0.98127 0.92998 0.94496 1.20783 0.85573 0.87528 0.83151 1.90465 1.43048 1.76828 1.39470 1.41934 1.43124 1.16777 1.19498 1.19633 1.25764 0.95055 1.05512 0.90413 1.26004 0.97765 1.02942 0.94613 1.69677 1.37860 1.39514 1.09131 0.84954 0.78157 0.77184 0.78197 1.19602 1.19631 1.19972 1.22002 0.95906 0.98817 0.89973 1.21845 1.01908 0.95423 0.96151 1.21037 0.98351 0.91110 0.83688 0.90649 1.45829 1.27584 1.53304 1.07429 1.14868 0.82746 0.78760 0.81466 1.90839 1.25210 1.43258 1.85697 1.20517 1.03888 1.04650 0.97838 1.22128 0.94508 0.92370 0.93586 1.19313 0.94459 1.04523 0.92320 1.23236 0.99301 0.97093 0.99785 1.23253 0.91889 1.00467 1.02659 0.91890 0.91272 0.93045 0.92683 0.90367 0.91625 0.88272 0.94097 0.86666 0.91865 0.77073 0.91402 0.91689 0.95517 0.92831 0.90919 0.74621 0.82534 0.89200 0.85133 0.84899 0.88450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.57 7.84 71.98 0.56 -2.01 16 2 C -0.06 -1.11 0.57 -52.13 -0.03 -1.14 16 3 C -0.14 -1.94 8.35 71.98 0.60 -1.34 16 4 C 0.06 1.47 4.18 86.33 0.36 1.83 16 5 N -0.52 -16.52 3.68 -900.91 -3.31 -19.84 16 6 C 0.06 1.98 5.45 85.56 0.47 2.45 16 7 C 0.44 21.08 7.46 87.66 0.65 21.73 16 8 O -0.61 -33.74 13.90 -3.06 -0.04 -33.78 16 9 N -0.58 -29.72 5.29 -306.98 -1.62 -31.34 16 10 C -0.33 -18.90 9.68 84.04 0.81 -18.08 16 11 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 12 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 13 N -0.92 -50.08 13.05 21.66 0.28 -49.80 16 14 Si 0.99 43.55 29.55 68.60 2.03 45.58 16 15 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 16 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 17 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 18 C 0.06 2.13 5.10 86.33 0.44 2.57 16 19 C -0.11 -3.46 5.32 30.65 0.16 -3.30 16 20 C 0.16 3.93 1.63 45.07 0.07 4.00 16 21 H 0.08 2.07 7.58 -2.39 -0.02 2.05 16 22 N -0.69 -14.82 4.36 -449.74 -1.96 -16.78 16 23 C 0.63 17.18 7.62 85.49 0.65 17.83 16 24 O -0.57 -20.23 16.75 -4.06 -0.07 -20.30 16 25 C -0.27 -6.18 13.61 30.02 0.41 -5.78 16 26 C -0.02 -0.43 13.47 31.13 0.42 -0.01 16 27 C -0.09 -0.86 6.22 -12.60 -0.08 -0.94 16 28 C -0.16 -1.14 10.21 30.59 0.31 -0.82 16 29 C -0.15 -0.84 10.21 30.59 0.31 -0.53 16 30 H 0.06 0.92 6.41 -2.39 -0.02 0.90 16 31 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 32 H 0.05 1.34 6.02 -2.39 -0.01 1.33 16 33 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.06 0.84 7.62 -2.39 -0.02 0.82 16 36 H 0.10 1.92 8.02 -2.39 -0.02 1.90 16 37 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.12 3.38 7.99 -2.39 -0.02 3.36 16 39 H 0.06 2.00 8.12 -2.39 -0.02 1.98 16 40 H 0.40 19.40 7.90 -92.71 -0.73 18.67 16 41 H 0.28 14.11 8.31 -92.70 -0.77 13.34 16 42 H 0.06 2.81 5.78 -2.39 -0.01 2.80 16 43 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 45 H 0.07 2.27 6.59 -2.39 -0.02 2.26 16 46 H 0.42 6.67 6.63 -92.71 -0.61 6.06 16 47 H 0.16 0.89 8.14 -2.39 -0.02 0.87 16 48 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 49 H 0.13 0.39 8.14 -2.39 -0.02 0.37 16 50 H 0.13 0.16 8.14 -2.39 -0.02 0.14 16 51 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -75.01 413.99 1.52 -73.49 By element: Atomic # 1 Polarization: 36.97 SS G_CDS: -0.38 Total: 36.58 kcal Atomic # 6 Polarization: 9.59 SS G_CDS: 6.60 Total: 16.19 kcal Atomic # 7 Polarization: -111.14 SS G_CDS: -6.61 Total: -117.76 kcal Atomic # 8 Polarization: -53.97 SS G_CDS: -0.11 Total: -54.08 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -75.01 1.52 -73.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724968328.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.672 kcal (2) G-P(sol) polarization free energy of solvation -75.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds