Wall clock time and date at job start Wed Apr 1 2020 04:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.41386 * 126.80416 * 2 1 4 4 C 1.35446 * 103.98619 * 180.09377 * 3 2 1 5 5 C 1.50698 * 126.77613 * 179.90693 * 4 3 2 6 6 C 1.50705 * 115.55169 * 298.20448 * 5 4 3 7 7 O 1.21277 * 120.00367 * 115.29155 * 6 5 4 8 8 N 1.34773 * 119.99549 * 295.28965 * 6 5 4 9 9 C 1.46923 * 120.63745 * 355.11549 * 8 6 5 10 10 C 1.53190 * 108.77836 * 126.40865 * 9 8 6 11 11 C 1.53039 * 109.31434 * 54.64063 * 10 9 8 12 12 C 1.53044 * 109.53484 * 298.63607 * 11 10 9 13 13 H 1.09007 * 109.49424 * 301.41246 * 12 11 10 14 14 C 1.52995 * 109.49769 * 181.31839 * 12 11 10 15 15 H 1.08996 * 109.47128 * 300.15464 * 14 12 11 16 16 C 1.53005 * 109.46968 * 180.15961 * 14 12 11 17 17 N 1.46498 * 109.47307 * 60.15986 * 14 12 11 18 18 C 1.36940 * 119.99885 * 205.00189 * 17 14 12 19 19 H 1.07997 * 119.99974 * 0.02562 * 18 17 14 20 20 C 1.38812 * 119.99803 * 179.97438 * 18 17 14 21 21 N 1.31625 * 120.00011 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 120.00215 * 0.02562 * 20 18 17 23 23 H 1.48504 * 109.47424 * 89.99680 * 22 20 18 24 24 H 1.48499 * 109.47075 * 209.99754 * 22 20 18 25 25 H 1.48501 * 109.46881 * 329.99815 * 22 20 18 26 26 C 1.46928 * 120.62781 * 175.12978 * 8 6 5 27 27 C 1.53001 * 117.49745 * 83.87164 * 5 4 3 28 28 C 1.53002 * 117.50129 * 152.53460 * 5 4 3 29 29 O 1.34037 * 106.44835 * 359.64834 * 4 3 2 30 30 N 1.20920 * 111.56753 * 0.23997 * 29 4 3 31 31 H 1.09001 * 109.46966 * 270.29279 * 1 2 3 32 32 H 1.08999 * 109.47129 * 30.28901 * 1 2 3 33 33 H 1.09002 * 109.47535 * 150.29293 * 1 2 3 34 34 H 1.08001 * 128.00341 * 359.97438 * 3 2 1 35 35 H 1.08998 * 109.58382 * 6.62006 * 9 8 6 36 36 H 1.09004 * 109.70599 * 246.27219 * 9 8 6 37 37 H 1.09005 * 109.49435 * 174.58692 * 10 9 8 38 38 H 1.08995 * 109.49894 * 294.68314 * 10 9 8 39 39 H 1.08997 * 109.46205 * 58.64973 * 11 10 9 40 40 H 1.08996 * 109.46274 * 178.61251 * 11 10 9 41 41 H 1.09003 * 109.46721 * 299.99329 * 16 14 12 42 42 H 1.08992 * 109.47412 * 59.99892 * 16 14 12 43 43 H 1.09004 * 109.46970 * 179.97438 * 16 14 12 44 44 H 0.97000 * 120.00079 * 24.99980 * 17 14 12 45 45 H 0.96997 * 119.99932 * 180.02562 * 21 20 18 46 46 H 1.09004 * 109.59031 * 353.38342 * 26 8 6 47 47 H 1.09008 * 109.58428 * 113.66152 * 26 8 6 48 48 H 1.09000 * 117.49721 * 215.00267 * 27 5 4 49 49 H 1.08993 * 117.50215 * 0.02562 * 27 5 4 50 50 H 1.09000 * 117.49755 * 359.97347 * 28 5 4 51 51 H 1.08993 * 117.50157 * 144.97474 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3540 1.1321 0.0000 4 6 3.6024 0.6068 -0.0022 5 6 4.9021 1.3695 -0.0051 6 6 5.1352 2.2521 -1.2042 7 8 5.2021 3.4553 -1.0678 8 7 5.2693 1.7042 -2.4282 9 6 5.2976 0.2449 -2.5963 10 6 4.2362 -0.1535 -3.6265 11 6 4.4656 0.6324 -4.9194 12 6 4.3281 2.1306 -4.6388 13 1 3.3359 2.3358 -4.2367 14 6 4.5250 2.9138 -5.9383 15 1 5.5168 2.7069 -6.3404 16 6 4.3914 4.4117 -5.6563 17 7 3.5087 2.5076 -6.9121 18 6 3.7503 2.6479 -8.2527 19 1 4.6901 3.0576 -8.5921 20 6 2.7875 2.2625 -9.1755 21 7 3.0194 2.3979 -10.4640 22 14 1.1621 1.5532 -8.5885 23 1 0.1823 2.6527 -8.3976 24 1 0.6440 0.5988 -9.6013 25 1 1.3680 0.8444 -7.2999 26 6 5.3904 2.5549 -3.6200 27 6 5.4407 1.8527 1.3430 28 6 6.1221 0.6889 0.6188 29 8 3.4537 -0.7253 0.0046 30 7 2.2868 -1.0423 0.0057 31 1 -0.3633 0.0053 1.0277 32 1 -0.3633 0.8874 -0.5183 33 1 -0.3634 -0.8926 -0.5093 34 1 2.0709 2.1743 -0.0004 35 1 5.0806 -0.2369 -1.6429 36 1 6.2819 -0.0657 -2.9468 37 1 4.3113 -1.2214 -3.8318 38 1 3.2450 0.0731 -3.2339 39 1 5.4663 0.4244 -5.2982 40 1 3.7267 0.3328 -5.6626 41 1 3.3995 4.6185 -5.2543 42 1 5.1475 4.7139 -4.9318 43 1 4.5321 4.9696 -6.5821 44 1 2.6648 2.1392 -6.6073 45 1 2.3465 2.1289 -11.1088 46 1 5.2346 3.5974 -3.3422 47 1 6.3834 2.4369 -4.0538 48 1 5.9635 2.8089 1.3626 49 1 4.8552 1.6186 2.2321 50 1 5.9846 -0.3104 1.0318 51 1 7.0932 0.8791 0.1618 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732522973.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:31 Heat of formation + Delta-G solvation = 44.762711 kcal Electronic energy + Delta-G solvation = -32260.777090 eV Core-core repulsion = 28163.871367 eV Total energy + Delta-G solvation = -4096.905723 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -46.04460 -41.68067 -39.57347 -37.76510 -37.12374 -35.81517 -34.55134 -33.35927 -32.57130 -32.19125 -29.83828 -29.65272 -27.43826 -25.86800 -25.26955 -24.33041 -24.11095 -23.28617 -22.42682 -21.63979 -21.14690 -19.82951 -19.60639 -18.79818 -18.71924 -17.71203 -17.26982 -16.79294 -16.45929 -16.00701 -15.69950 -15.56712 -15.34918 -15.10035 -14.81456 -14.76520 -14.36824 -14.27160 -14.24656 -14.12508 -13.99035 -13.90779 -13.77583 -13.44933 -13.19091 -12.94254 -12.63218 -12.61107 -12.50281 -12.42203 -12.14283 -12.04492 -11.96136 -11.87363 -11.77458 -11.75447 -11.47988 -11.34206 -11.02799 -11.01346 -10.93775 -10.31960 -9.74478 -9.31089 -8.01576 -5.33493 0.29826 1.12751 1.18880 1.34801 1.37412 1.44484 1.77230 2.05231 2.47254 2.51914 3.17488 3.24180 3.30425 3.31403 3.51356 3.63890 3.65652 3.79212 3.86854 3.94513 4.00156 4.11844 4.19928 4.21717 4.33926 4.44117 4.47735 4.56274 4.58586 4.62821 4.63190 4.66527 4.74021 4.78137 4.78946 4.80585 4.81700 4.91153 4.93882 4.99903 5.05644 5.11638 5.16547 5.17836 5.35113 5.36314 5.40498 5.56899 5.79189 6.22808 6.26622 6.96384 7.08729 7.18485 7.85559 8.04058 9.20281 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012412 B = 0.003359 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2255.249197 B = 8334.072708 C = 9582.700144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.015 3.985 3 C -0.223 4.223 4 C 0.013 3.987 5 C -0.110 4.110 6 C 0.558 3.442 7 O -0.563 6.563 8 N -0.597 5.597 9 C 0.108 3.892 10 C -0.126 4.126 11 C -0.108 4.108 12 C -0.092 4.092 13 H 0.057 0.943 14 C 0.181 3.819 15 H 0.052 0.948 16 C -0.160 4.160 17 N -0.747 5.747 18 C -0.219 4.219 19 H 0.059 0.941 20 C -0.063 4.063 21 N -0.985 5.985 22 Si 0.948 3.052 23 H -0.283 1.283 24 H -0.297 1.297 25 H -0.254 1.254 26 C 0.124 3.876 27 C -0.116 4.116 28 C -0.127 4.127 29 O 0.102 5.898 30 N -0.384 5.384 31 H 0.097 0.903 32 H 0.092 0.908 33 H 0.077 0.923 34 H 0.176 0.824 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.044 0.956 39 H 0.071 0.929 40 H 0.049 0.951 41 H 0.043 0.957 42 H 0.071 0.929 43 H 0.035 0.965 44 H 0.362 0.638 45 H 0.256 0.744 46 H 0.086 0.914 47 H 0.086 0.914 48 H 0.114 0.886 49 H 0.122 0.878 50 H 0.131 0.869 51 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.823 -6.774 29.908 30.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.143 4.143 3 C -0.245 4.245 4 C -0.051 4.051 5 C -0.115 4.115 6 C 0.346 3.654 7 O -0.442 6.442 8 N -0.328 5.328 9 C -0.014 4.014 10 C -0.164 4.164 11 C -0.146 4.146 12 C -0.112 4.112 13 H 0.076 0.924 14 C 0.073 3.927 15 H 0.070 0.930 16 C -0.220 4.220 17 N -0.390 5.390 18 C -0.351 4.351 19 H 0.077 0.923 20 C -0.254 4.254 21 N -0.636 5.636 22 Si 0.776 3.224 23 H -0.210 1.210 24 H -0.224 1.224 25 H -0.179 1.179 26 C 0.001 3.999 27 C -0.153 4.153 28 C -0.164 4.164 29 O 0.036 5.964 30 N -0.089 5.089 31 H 0.116 0.884 32 H 0.111 0.889 33 H 0.096 0.904 34 H 0.194 0.806 35 H 0.113 0.887 36 H 0.114 0.886 37 H 0.108 0.892 38 H 0.063 0.937 39 H 0.090 0.910 40 H 0.068 0.932 41 H 0.062 0.938 42 H 0.090 0.910 43 H 0.054 0.946 44 H 0.195 0.805 45 H 0.065 0.935 46 H 0.105 0.895 47 H 0.104 0.896 48 H 0.132 0.868 49 H 0.140 0.860 50 H 0.149 0.851 51 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 3.760 -7.429 29.787 30.929 hybrid contribution -1.533 0.682 -0.836 1.874 sum 2.228 -6.747 28.952 29.811 Atomic orbital electron populations 1.20321 0.84112 1.04544 1.04609 1.24031 1.00354 0.88268 1.01667 1.22587 0.91268 1.01685 1.08933 1.22856 0.95634 0.83472 1.03115 1.19222 0.92253 1.03562 0.96427 1.19385 0.75596 0.87161 0.83272 1.90700 1.52265 1.15878 1.85350 1.48092 1.70800 1.08121 1.05744 1.21966 1.00543 0.78405 1.00529 1.21845 0.98431 1.01019 0.95103 1.21463 1.02511 0.93627 0.96991 1.21598 0.98990 0.96049 0.94600 0.92439 1.20330 0.92237 0.92367 0.87801 0.93005 1.22361 1.01125 0.98027 1.00479 1.42756 1.17437 1.76801 1.02001 1.19016 1.00667 1.32887 0.82485 0.92262 1.25389 1.01867 1.03027 0.95093 1.69870 1.36376 1.56160 1.01187 0.85511 0.80747 0.78252 0.77860 1.20991 1.22374 1.17894 1.21643 0.99021 0.95266 0.83938 1.23297 1.00709 1.00244 0.91051 1.23431 0.93853 0.99329 0.99739 1.84788 1.21545 1.22309 1.67728 1.73848 0.89581 1.24475 1.21021 0.88431 0.88889 0.90446 0.80638 0.88705 0.88559 0.89191 0.93686 0.91002 0.93241 0.93772 0.91026 0.94615 0.80519 0.93490 0.89537 0.89588 0.86767 0.85960 0.85107 0.85981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.09 10.47 71.23 0.75 -0.34 16 2 C 0.01 0.30 7.33 43.58 0.32 0.62 16 3 C -0.22 -4.36 11.05 22.40 0.25 -4.12 16 4 C 0.01 0.24 5.25 25.04 0.13 0.37 16 5 C -0.11 -1.81 1.26 -53.67 -0.07 -1.88 16 6 C 0.56 12.80 6.95 87.66 0.61 13.41 16 7 O -0.56 -16.70 16.11 -3.02 -0.05 -16.74 16 8 N -0.60 -13.04 2.97 -818.90 -2.43 -15.47 16 9 C 0.11 1.92 6.11 86.36 0.53 2.44 16 10 C -0.13 -2.76 6.08 30.67 0.19 -2.58 16 11 C -0.11 -3.00 5.03 30.62 0.15 -2.85 16 12 C -0.09 -2.70 1.97 -10.72 -0.02 -2.72 16 13 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 14 C 0.18 6.57 2.47 44.99 0.11 6.68 16 15 H 0.05 1.95 8.08 -2.39 -0.02 1.93 16 16 C -0.16 -5.52 9.14 71.98 0.66 -4.86 16 17 N -0.75 -34.09 4.22 -322.95 -1.36 -35.45 16 18 C -0.22 -12.32 10.41 84.03 0.87 -11.44 16 19 H 0.06 3.64 8.06 -2.91 -0.02 3.62 16 20 C -0.06 -3.68 5.50 84.86 0.47 -3.21 16 21 N -0.98 -63.22 13.97 21.65 0.30 -62.92 16 22 Si 0.95 45.91 27.74 68.60 1.90 47.81 16 23 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 24 H -0.30 -14.57 7.11 99.48 0.71 -13.87 16 25 H -0.25 -11.15 6.52 99.48 0.65 -10.50 16 26 C 0.12 3.08 5.17 86.36 0.45 3.52 16 27 C -0.12 -1.37 9.76 30.62 0.30 -1.07 16 28 C -0.13 -1.23 9.49 30.62 0.29 -0.94 16 29 O 0.10 2.03 10.40 71.66 0.75 2.78 16 30 N -0.38 -8.60 12.07 -49.55 -0.60 -9.20 16 31 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.18 3.16 8.06 -2.91 -0.02 3.14 16 35 H 0.09 1.50 4.36 -2.39 -0.01 1.49 16 36 H 0.10 1.36 8.14 -2.38 -0.02 1.34 16 37 H 0.09 1.73 8.14 -2.38 -0.02 1.71 16 38 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.05 1.66 7.42 -2.39 -0.02 1.64 16 41 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.07 2.04 6.56 -2.39 -0.02 2.03 16 43 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.36 16.23 5.46 -92.71 -0.51 15.72 16 45 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 46 H 0.09 2.37 5.65 -2.38 -0.01 2.35 16 47 H 0.09 1.92 8.14 -2.38 -0.02 1.90 16 48 H 0.11 1.49 7.98 -2.39 -0.02 1.47 16 49 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 50 H 0.13 0.87 8.14 -2.39 -0.02 0.85 16 51 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -73.28 405.58 4.86 -68.42 By element: Atomic # 1 Polarization: 29.38 SS G_CDS: 0.37 Total: 29.75 kcal Atomic # 6 Polarization: -14.95 SS G_CDS: 5.98 Total: -8.97 kcal Atomic # 7 Polarization: -118.95 SS G_CDS: -4.09 Total: -123.04 kcal Atomic # 8 Polarization: -14.66 SS G_CDS: 0.70 Total: -13.97 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 1.90 Total: 47.81 kcal Total: -73.28 4.86 -68.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732522973.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.179 kcal (2) G-P(sol) polarization free energy of solvation -73.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds