Wall clock time and date at job start Wed Apr 1 2020 04:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34865 * 119.10533 * 2 1 4 4 C 1.41666 * 119.34068 * 179.73530 * 3 2 1 5 5 O 1.22088 * 121.06832 * 180.23787 * 4 3 2 6 6 C 1.47099 * 117.86561 * 0.48137 * 4 3 2 7 7 C 1.47281 * 120.88502 * 179.77671 * 6 4 3 8 8 O 1.21615 * 120.00028 * 359.72069 * 7 6 4 9 9 N 1.34779 * 120.00180 * 179.72041 * 7 6 4 10 10 C 1.46501 * 120.00037 * 179.97438 * 9 7 6 11 11 H 1.08996 * 109.47089 * 35.00183 * 10 9 7 12 12 C 1.52994 * 109.47139 * 275.00118 * 10 9 7 13 13 C 1.53005 * 109.47140 * 180.02562 * 12 10 9 14 14 C 1.52994 * 109.46955 * 60.00099 * 13 12 10 15 15 C 1.53002 * 109.47335 * 299.99981 * 14 13 12 16 16 C 1.53002 * 109.46624 * 155.00167 * 10 9 7 17 17 H 1.09005 * 109.47446 * 60.00430 * 16 10 9 18 18 C 1.52994 * 109.47323 * 299.99839 * 16 10 9 19 19 N 1.46506 * 109.47078 * 175.00152 * 18 16 10 20 20 C 1.36942 * 119.99727 * 180.02562 * 19 18 16 21 21 H 1.08000 * 119.99825 * 0.02562 * 20 19 18 22 22 C 1.38811 * 119.99730 * 180.02562 * 20 19 18 23 23 N 1.31627 * 120.00020 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00086 * 180.02562 * 22 20 19 25 25 H 1.48507 * 109.46986 * 359.97438 * 24 22 20 26 26 H 1.48490 * 109.47562 * 119.99834 * 24 22 20 27 27 H 1.48503 * 109.46999 * 240.00184 * 24 22 20 28 28 C 1.37988 * 118.23246 * 359.50505 * 6 4 3 29 29 N 1.34348 * 120.37220 * 0.27038 * 28 6 4 30 30 C 1.46507 * 118.80262 * 179.97438 * 29 28 6 31 31 H 1.09001 * 109.47024 * 264.09930 * 1 2 3 32 32 H 1.09002 * 109.47014 * 24.09598 * 1 2 3 33 33 H 1.08999 * 109.47526 * 144.09256 * 1 2 3 34 34 H 1.08003 * 120.32483 * 359.97438 * 3 2 1 35 35 H 0.97003 * 119.99880 * 0.02562 * 9 7 6 36 36 H 1.09005 * 109.47343 * 299.99822 * 12 10 9 37 37 H 1.09004 * 109.47343 * 60.00426 * 12 10 9 38 38 H 1.09005 * 109.46683 * 300.00012 * 13 12 10 39 39 H 1.09000 * 109.46954 * 179.97438 * 13 12 10 40 40 H 1.09006 * 109.47186 * 180.02562 * 14 13 12 41 41 H 1.08996 * 109.47425 * 60.00172 * 14 13 12 42 42 H 1.08996 * 109.47271 * 180.02562 * 15 14 13 43 43 H 1.09005 * 109.47180 * 300.00624 * 15 14 13 44 44 H 1.08999 * 109.47116 * 295.00345 * 18 16 10 45 45 H 1.09005 * 109.47097 * 55.00489 * 18 16 10 46 46 H 0.96997 * 119.99797 * 0.02562 * 19 18 16 47 47 H 0.96999 * 119.99713 * 179.97438 * 23 22 20 48 48 H 1.08004 * 119.81592 * 180.24953 * 28 6 4 49 49 H 1.08999 * 109.46738 * 95.97346 * 30 29 28 50 50 H 1.09001 * 109.46836 * 215.96579 * 30 29 28 51 51 H 1.09001 * 109.47351 * 335.97227 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1630 1.1783 0.0000 4 6 3.5796 1.1842 0.0057 5 8 4.2053 2.2325 0.0102 6 6 4.2725 -0.1134 0.0005 7 6 5.7436 -0.1849 0.0010 8 8 6.4021 0.8376 0.0007 9 7 6.3601 -1.3834 0.0019 10 6 7.8233 -1.4545 0.0018 11 1 8.2271 -0.6309 0.5906 12 6 8.3387 -1.3548 -1.4352 13 6 9.8669 -1.4296 -1.4353 14 6 10.3123 -2.7600 -0.8250 15 6 9.7969 -2.8598 0.6121 16 6 8.2692 -2.7847 0.6124 17 1 7.8655 -3.6083 0.0236 18 6 7.7538 -2.8844 2.0495 19 7 8.0776 -4.2055 2.5938 20 6 7.7121 -4.5270 3.8738 21 1 7.1847 -3.8068 4.4818 22 6 8.0194 -5.7785 4.3897 23 7 8.6616 -6.6564 3.6485 24 14 7.5201 -6.2174 6.1354 25 1 6.8144 -5.0658 6.7528 26 1 6.6174 -7.3961 6.1106 27 1 8.7322 -6.5388 6.9309 28 6 3.5076 -1.2619 0.0009 29 7 2.1663 -1.1847 0.0004 30 6 1.3879 -2.4259 0.0003 31 1 -0.3633 -0.1056 1.0222 32 1 -0.3633 0.9381 -0.4196 33 1 -0.3634 -0.8323 -0.6027 34 1 1.6137 2.1083 -0.0004 35 1 5.8348 -2.1990 0.0018 36 1 7.9350 -2.1784 -2.0241 37 1 8.0211 -0.4071 -1.8702 38 1 10.2710 -0.6062 -0.8464 39 1 10.2341 -1.3590 -2.4592 40 1 11.4011 -2.8132 -0.8247 41 1 9.9082 -3.5834 -1.4139 42 1 10.1146 -3.8074 1.0471 43 1 10.2010 -2.0364 1.2011 44 1 8.2264 -2.1144 2.6592 45 1 6.6731 -2.7427 2.0586 46 1 8.5509 -4.8524 2.0476 47 1 8.8767 -7.5308 4.0092 48 1 3.9898 -2.2283 0.0012 49 1 1.1039 -2.6767 1.0223 50 1 0.4904 -2.2917 -0.6036 51 1 1.9901 -3.2324 -0.4179 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733071442.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:31 Heat of formation + Delta-G solvation = -37.367544 kcal Electronic energy + Delta-G solvation = -31205.147515 eV Core-core repulsion = 27104.680357 eV Total energy + Delta-G solvation = -4100.467158 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.43977 -39.79277 -38.28642 -37.47306 -34.60892 -34.17077 -33.56942 -32.74381 -31.86221 -29.72876 -29.46315 -28.02854 -27.18394 -25.20750 -24.45618 -23.04815 -22.61782 -21.48052 -20.60664 -20.43560 -19.75920 -18.18313 -17.80062 -17.12308 -16.41046 -16.35794 -15.96163 -15.71853 -14.95504 -14.67375 -14.58526 -14.34979 -14.15465 -13.88784 -13.80155 -13.74671 -13.56170 -13.41344 -13.26840 -13.19272 -12.97461 -12.75414 -12.58820 -12.32472 -12.27275 -12.14100 -11.77553 -11.47987 -11.02773 -10.90259 -10.87442 -10.67957 -10.33305 -10.19122 -10.04557 -9.93311 -9.80610 -9.72885 -9.63147 -9.14790 -8.90614 -8.73244 -8.11187 -6.92702 -5.79144 -3.07023 0.68305 1.11117 2.07176 3.06876 3.28922 3.40040 3.46907 3.48537 3.77382 3.85005 4.12269 4.24212 4.42706 4.53670 4.55905 4.76131 4.84066 4.86885 4.90358 4.94064 4.99362 5.09635 5.20313 5.27591 5.32554 5.42555 5.47623 5.55414 5.57457 5.66671 5.70933 5.74826 5.81680 5.96492 6.10724 6.16975 6.22148 6.29907 6.31466 6.32988 6.36998 6.45248 6.53195 6.61933 6.69321 6.72107 6.82736 6.96378 7.69016 7.73878 8.11135 8.40279 8.54231 9.51607 10.09928 10.45111 11.43775 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007978 B = 0.003365 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3508.792632 B = 8319.308623 C =10877.743522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.155 3.845 3 C -0.270 4.270 4 C 0.408 3.592 5 O -0.481 6.481 6 C -0.297 4.297 7 C 0.573 3.427 8 O -0.514 6.514 9 N -0.726 5.726 10 C 0.157 3.843 11 H 0.088 0.912 12 C -0.126 4.126 13 C -0.115 4.115 14 C -0.121 4.121 15 C -0.107 4.107 16 C -0.099 4.099 17 H 0.073 0.927 18 C 0.159 3.841 19 N -0.731 5.731 20 C -0.236 4.236 21 H 0.069 0.931 22 C -0.014 4.014 23 N -0.933 5.933 24 Si 0.904 3.096 25 H -0.281 1.281 26 H -0.292 1.292 27 H -0.291 1.291 28 C 0.175 3.825 29 N -0.471 5.471 30 C 0.047 3.953 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.151 0.849 35 H 0.392 0.608 36 H 0.060 0.940 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.059 0.941 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.078 0.922 43 H 0.061 0.939 44 H 0.019 0.981 45 H 0.017 0.983 46 H 0.384 0.616 47 H 0.254 0.746 48 H 0.168 0.832 49 H 0.084 0.916 50 H 0.093 0.907 51 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.569 6.933 -13.743 22.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.049 3.951 3 C -0.294 4.294 4 C 0.294 3.706 5 O -0.362 6.362 6 C -0.308 4.308 7 C 0.360 3.640 8 O -0.389 6.389 9 N -0.378 5.378 10 C 0.052 3.948 11 H 0.106 0.894 12 C -0.165 4.165 13 C -0.153 4.153 14 C -0.158 4.158 15 C -0.145 4.145 16 C -0.118 4.118 17 H 0.091 0.909 18 C 0.031 3.969 19 N -0.375 5.375 20 C -0.368 4.368 21 H 0.087 0.913 22 C -0.210 4.210 23 N -0.583 5.583 24 Si 0.736 3.264 25 H -0.206 1.206 26 H -0.220 1.220 27 H -0.218 1.218 28 C 0.045 3.955 29 N -0.158 5.158 30 C -0.094 4.094 31 H 0.107 0.893 32 H 0.111 0.889 33 H 0.099 0.901 34 H 0.169 0.831 35 H 0.226 0.774 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.097 0.903 43 H 0.080 0.920 44 H 0.037 0.963 45 H 0.035 0.965 46 H 0.218 0.782 47 H 0.064 0.936 48 H 0.185 0.815 49 H 0.103 0.897 50 H 0.112 0.888 51 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -15.953 8.119 -13.560 22.457 hybrid contribution -0.449 -1.242 0.912 1.604 sum -16.402 6.878 -12.649 21.825 Atomic orbital electron populations 1.21187 0.88096 1.04960 1.04178 1.20268 0.94855 0.85013 0.94972 1.22276 0.96367 0.97146 1.13658 1.18143 0.88205 0.87914 0.76358 1.90820 1.69937 1.33228 1.42252 1.22566 0.94510 0.95052 1.18691 1.17447 0.86032 0.83676 0.76839 1.90836 1.65805 1.33940 1.48297 1.46010 1.07720 1.07596 1.76443 1.20962 0.78649 0.98963 0.96201 0.89375 1.21895 0.95931 1.01924 0.96700 1.21490 0.95099 0.98181 1.00548 1.21592 1.00275 0.97134 0.96811 1.21486 0.93903 1.03309 0.95824 1.21575 0.96756 0.95651 0.97816 0.90870 1.20666 0.96529 0.89234 0.90479 1.42387 1.69575 1.11594 1.13989 1.19277 1.29892 0.97575 0.90010 0.91288 1.24712 1.01372 0.96690 0.98220 1.69668 1.45834 1.06681 1.36073 0.86151 0.77713 0.77875 0.84683 1.20615 1.21957 1.21848 1.22286 0.82152 1.00085 0.91026 1.42567 1.05328 1.07260 1.60595 1.22584 0.97781 0.84312 1.04767 0.89268 0.88930 0.90119 0.83119 0.77356 0.92086 0.91700 0.91844 0.92236 0.92150 0.92111 0.90305 0.92006 0.96285 0.96479 0.78237 0.93621 0.81464 0.89695 0.88846 0.88596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.36 9.34 36.00 0.34 -0.03 16 2 C 0.15 1.10 6.64 -82.13 -0.55 0.55 16 3 C -0.27 -2.91 9.57 -39.47 -0.38 -3.29 16 4 C 0.41 6.46 6.96 -34.68 -0.24 6.22 16 5 O -0.48 -10.00 16.41 -15.18 -0.25 -10.25 16 6 C -0.30 -4.14 6.05 -102.72 -0.62 -4.76 16 7 C 0.57 9.51 7.74 -12.58 -0.10 9.41 16 8 O -0.51 -10.95 15.24 -14.75 -0.22 -11.17 16 9 N -0.73 -10.00 4.26 -54.93 -0.23 -10.24 16 10 C 0.16 2.32 1.90 -67.93 -0.13 2.19 16 11 H 0.09 1.52 7.58 -51.93 -0.39 1.13 16 12 C -0.13 -1.66 5.49 -26.73 -0.15 -1.80 16 13 C -0.12 -1.41 5.92 -26.73 -0.16 -1.57 16 14 C -0.12 -1.54 5.92 -26.73 -0.16 -1.70 16 15 C -0.11 -1.67 5.07 -26.75 -0.14 -1.80 16 16 C -0.10 -1.55 1.80 -90.64 -0.16 -1.71 16 17 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 18 C 0.16 3.14 5.57 -4.04 -0.02 3.12 16 19 N -0.73 -17.86 5.33 -59.90 -0.32 -18.18 16 20 C -0.24 -6.50 9.99 -15.06 -0.15 -6.65 16 21 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 22 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 23 N -0.93 -27.56 13.06 55.49 0.72 -26.84 16 24 Si 0.90 22.09 29.55 -169.99 -5.02 17.07 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 26 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 27 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 28 C 0.18 1.55 9.80 -16.54 -0.16 1.39 16 29 N -0.47 -3.04 2.97 -119.74 -0.36 -3.40 16 30 C 0.05 0.11 9.98 59.85 0.60 0.70 16 31 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.09 0.21 7.97 -51.93 -0.41 -0.20 16 33 H 0.08 0.08 6.00 -51.93 -0.31 -0.24 16 34 H 0.15 1.39 8.01 -52.48 -0.42 0.97 16 35 H 0.39 4.34 6.47 -40.82 -0.26 4.08 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.08 1.40 7.18 -51.93 -0.37 1.03 16 43 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 44 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.02 0.34 7.31 -51.93 -0.38 -0.04 16 46 H 0.38 9.77 6.85 -40.82 -0.28 9.49 16 47 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 48 H 0.17 1.00 6.28 -52.48 -0.33 0.67 16 49 H 0.08 0.16 8.14 -51.93 -0.42 -0.27 16 50 H 0.09 0.02 5.94 -51.93 -0.31 -0.28 16 51 H 0.10 0.11 7.86 -51.93 -0.41 -0.30 16 LS Contribution 404.53 15.07 6.10 6.10 Total: -1.00 -39.48 404.53 -9.93 -49.41 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: -8.08 Total: 7.72 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: -2.27 Total: -0.23 kcal Atomic # 7 Polarization: -58.47 SS G_CDS: -0.18 Total: -58.65 kcal Atomic # 8 Polarization: -20.95 SS G_CDS: -0.47 Total: -21.42 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -39.48 -9.93 -49.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733071442.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.046 kcal (2) G-P(sol) polarization free energy of solvation -39.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds