Wall clock time and date at job start Wed Apr 1 2020 04:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34865 * 119.10533 * 2 1 4 4 C 1.41666 * 119.34068 * 179.73530 * 3 2 1 5 5 O 1.22088 * 121.06832 * 180.23787 * 4 3 2 6 6 C 1.47099 * 117.86561 * 0.48137 * 4 3 2 7 7 C 1.47281 * 120.88502 * 179.77671 * 6 4 3 8 8 O 1.21615 * 120.00028 * 359.72069 * 7 6 4 9 9 N 1.34779 * 120.00180 * 179.72041 * 7 6 4 10 10 C 1.46501 * 120.00037 * 179.97438 * 9 7 6 11 11 H 1.08996 * 109.47089 * 35.00183 * 10 9 7 12 12 C 1.52994 * 109.47139 * 275.00118 * 10 9 7 13 13 C 1.53005 * 109.47140 * 180.02562 * 12 10 9 14 14 C 1.52994 * 109.46955 * 60.00099 * 13 12 10 15 15 C 1.53002 * 109.47335 * 299.99981 * 14 13 12 16 16 C 1.53002 * 109.46624 * 155.00167 * 10 9 7 17 17 H 1.09005 * 109.47446 * 60.00430 * 16 10 9 18 18 C 1.52994 * 109.47323 * 299.99839 * 16 10 9 19 19 N 1.46506 * 109.47078 * 175.00152 * 18 16 10 20 20 C 1.36942 * 119.99727 * 180.02562 * 19 18 16 21 21 H 1.08000 * 119.99825 * 0.02562 * 20 19 18 22 22 C 1.38811 * 119.99730 * 180.02562 * 20 19 18 23 23 N 1.31627 * 120.00020 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00086 * 180.02562 * 22 20 19 25 25 H 1.48507 * 109.46986 * 359.97438 * 24 22 20 26 26 H 1.48490 * 109.47562 * 119.99834 * 24 22 20 27 27 H 1.48503 * 109.46999 * 240.00184 * 24 22 20 28 28 C 1.37988 * 118.23246 * 359.50505 * 6 4 3 29 29 N 1.34348 * 120.37220 * 0.27038 * 28 6 4 30 30 C 1.46507 * 118.80262 * 179.97438 * 29 28 6 31 31 H 1.09001 * 109.47024 * 264.09930 * 1 2 3 32 32 H 1.09002 * 109.47014 * 24.09598 * 1 2 3 33 33 H 1.08999 * 109.47526 * 144.09256 * 1 2 3 34 34 H 1.08003 * 120.32483 * 359.97438 * 3 2 1 35 35 H 0.97003 * 119.99880 * 0.02562 * 9 7 6 36 36 H 1.09005 * 109.47343 * 299.99822 * 12 10 9 37 37 H 1.09004 * 109.47343 * 60.00426 * 12 10 9 38 38 H 1.09005 * 109.46683 * 300.00012 * 13 12 10 39 39 H 1.09000 * 109.46954 * 179.97438 * 13 12 10 40 40 H 1.09006 * 109.47186 * 180.02562 * 14 13 12 41 41 H 1.08996 * 109.47425 * 60.00172 * 14 13 12 42 42 H 1.08996 * 109.47271 * 180.02562 * 15 14 13 43 43 H 1.09005 * 109.47180 * 300.00624 * 15 14 13 44 44 H 1.08999 * 109.47116 * 295.00345 * 18 16 10 45 45 H 1.09005 * 109.47097 * 55.00489 * 18 16 10 46 46 H 0.96997 * 119.99797 * 0.02562 * 19 18 16 47 47 H 0.96999 * 119.99713 * 179.97438 * 23 22 20 48 48 H 1.08004 * 119.81592 * 180.24953 * 28 6 4 49 49 H 1.08999 * 109.46738 * 95.97346 * 30 29 28 50 50 H 1.09001 * 109.46836 * 215.96579 * 30 29 28 51 51 H 1.09001 * 109.47351 * 335.97227 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1630 1.1783 0.0000 4 6 3.5796 1.1842 0.0057 5 8 4.2053 2.2325 0.0102 6 6 4.2725 -0.1134 0.0005 7 6 5.7436 -0.1849 0.0010 8 8 6.4021 0.8376 0.0007 9 7 6.3601 -1.3834 0.0019 10 6 7.8233 -1.4545 0.0018 11 1 8.2271 -0.6309 0.5906 12 6 8.3387 -1.3548 -1.4352 13 6 9.8669 -1.4296 -1.4353 14 6 10.3123 -2.7600 -0.8250 15 6 9.7969 -2.8598 0.6121 16 6 8.2692 -2.7847 0.6124 17 1 7.8655 -3.6083 0.0236 18 6 7.7538 -2.8844 2.0495 19 7 8.0776 -4.2055 2.5938 20 6 7.7121 -4.5270 3.8738 21 1 7.1847 -3.8068 4.4818 22 6 8.0194 -5.7785 4.3897 23 7 8.6616 -6.6564 3.6485 24 14 7.5201 -6.2174 6.1354 25 1 6.8144 -5.0658 6.7528 26 1 6.6174 -7.3961 6.1106 27 1 8.7322 -6.5388 6.9309 28 6 3.5076 -1.2619 0.0009 29 7 2.1663 -1.1847 0.0004 30 6 1.3879 -2.4259 0.0003 31 1 -0.3633 -0.1056 1.0222 32 1 -0.3633 0.9381 -0.4196 33 1 -0.3634 -0.8323 -0.6027 34 1 1.6137 2.1083 -0.0004 35 1 5.8348 -2.1990 0.0018 36 1 7.9350 -2.1784 -2.0241 37 1 8.0211 -0.4071 -1.8702 38 1 10.2710 -0.6062 -0.8464 39 1 10.2341 -1.3590 -2.4592 40 1 11.4011 -2.8132 -0.8247 41 1 9.9082 -3.5834 -1.4139 42 1 10.1146 -3.8074 1.0471 43 1 10.2010 -2.0364 1.2011 44 1 8.2264 -2.1144 2.6592 45 1 6.6731 -2.7427 2.0586 46 1 8.5509 -4.8524 2.0476 47 1 8.8767 -7.5308 4.0092 48 1 3.9898 -2.2283 0.0012 49 1 1.1039 -2.6767 1.0223 50 1 0.4904 -2.2917 -0.6036 51 1 1.9901 -3.2324 -0.4179 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733071442.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:30 Heat of formation + Delta-G solvation = -64.227932 kcal Electronic energy + Delta-G solvation = -31206.312269 eV Core-core repulsion = 27104.680357 eV Total energy + Delta-G solvation = -4101.631912 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.25043 -40.99016 -39.44426 -38.68367 -36.41106 -35.34899 -34.29890 -33.71267 -33.53513 -31.21413 -30.65333 -28.79649 -27.68160 -26.91195 -25.28371 -24.71721 -23.80731 -22.42579 -21.99123 -21.60201 -20.89324 -19.42050 -18.92791 -18.55270 -17.25860 -17.01892 -16.97052 -16.83955 -16.70561 -15.91957 -15.79034 -15.52995 -15.48650 -15.16842 -14.95878 -14.83239 -14.63092 -14.51174 -14.21762 -14.03114 -13.85179 -13.83502 -13.63234 -13.36401 -13.28782 -12.95307 -12.76589 -12.68973 -12.66234 -12.52190 -12.19659 -12.07121 -11.92027 -11.85306 -11.53233 -11.35279 -11.15052 -11.05660 -10.90320 -10.49779 -10.30493 -9.99355 -9.05785 -8.97139 -7.94134 -5.22036 -0.21081 0.32157 1.46258 1.46754 1.49274 1.58104 1.90969 2.14715 2.56095 2.79339 3.21407 3.39240 3.55088 3.59174 3.64316 3.78360 3.79748 3.94353 4.09951 4.17793 4.23547 4.27772 4.40017 4.41112 4.46353 4.46743 4.51494 4.53961 4.58696 4.71508 4.73730 4.82492 4.85829 4.85947 4.89465 5.04641 5.13373 5.14278 5.16158 5.24754 5.30422 5.30951 5.31604 5.44426 5.49231 5.52224 5.63069 5.69750 5.79764 6.28396 6.61836 7.08944 7.35635 7.35850 8.09980 8.36693 9.29026 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007978 B = 0.003365 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3508.792632 B = 8319.308623 C =10877.743522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.186 3.814 3 C -0.304 4.304 4 C 0.383 3.617 5 O -0.567 6.567 6 C -0.351 4.351 7 C 0.570 3.430 8 O -0.577 6.577 9 N -0.712 5.712 10 C 0.163 3.837 11 H 0.055 0.945 12 C -0.118 4.118 13 C -0.112 4.112 14 C -0.111 4.111 15 C -0.106 4.106 16 C -0.081 4.081 17 H 0.089 0.911 18 C 0.160 3.840 19 N -0.736 5.736 20 C -0.244 4.244 21 H 0.067 0.933 22 C -0.068 4.068 23 N -0.964 5.964 24 Si 0.968 3.032 25 H -0.272 1.272 26 H -0.287 1.287 27 H -0.296 1.296 28 C 0.218 3.782 29 N -0.456 5.456 30 C 0.031 3.969 31 H 0.108 0.892 32 H 0.100 0.900 33 H 0.114 0.886 34 H 0.156 0.844 35 H 0.408 0.592 36 H 0.083 0.917 37 H 0.048 0.952 38 H 0.052 0.948 39 H 0.083 0.917 40 H 0.071 0.929 41 H 0.074 0.926 42 H 0.055 0.945 43 H 0.048 0.952 44 H -0.003 1.003 45 H 0.027 0.973 46 H 0.378 0.622 47 H 0.252 0.748 48 H 0.205 0.795 49 H 0.100 0.900 50 H 0.124 0.876 51 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.957 3.815 -14.668 25.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.078 3.922 3 C -0.327 4.327 4 C 0.276 3.724 5 O -0.456 6.456 6 C -0.362 4.362 7 C 0.360 3.640 8 O -0.456 6.456 9 N -0.364 5.364 10 C 0.058 3.942 11 H 0.073 0.927 12 C -0.156 4.156 13 C -0.150 4.150 14 C -0.148 4.148 15 C -0.145 4.145 16 C -0.100 4.100 17 H 0.108 0.892 18 C 0.034 3.966 19 N -0.380 5.380 20 C -0.376 4.376 21 H 0.085 0.915 22 C -0.260 4.260 23 N -0.615 5.615 24 Si 0.797 3.203 25 H -0.197 1.197 26 H -0.214 1.214 27 H -0.224 1.224 28 C 0.083 3.917 29 N -0.139 5.139 30 C -0.108 4.108 31 H 0.126 0.874 32 H 0.118 0.882 33 H 0.132 0.868 34 H 0.174 0.826 35 H 0.245 0.755 36 H 0.102 0.898 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.101 0.899 40 H 0.090 0.910 41 H 0.093 0.907 42 H 0.074 0.926 43 H 0.067 0.933 44 H 0.015 0.985 45 H 0.045 0.955 46 H 0.211 0.789 47 H 0.061 0.939 48 H 0.222 0.778 49 H 0.119 0.881 50 H 0.143 0.857 51 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -19.427 4.941 -14.493 24.736 hybrid contribution 0.419 -0.415 1.223 1.358 sum -19.008 4.526 -13.271 23.620 Atomic orbital electron populations 1.21403 0.83908 1.06923 1.05983 1.20864 0.97096 0.83890 0.90305 1.22155 0.94080 0.99414 1.17086 1.18935 0.90349 0.87791 0.75309 1.90761 1.71697 1.35510 1.47617 1.22230 0.93407 0.96255 1.24312 1.17910 0.87255 0.83277 0.75596 1.90793 1.67326 1.36064 1.51439 1.45826 1.07352 1.07597 1.75639 1.20802 0.79307 0.97056 0.97047 0.92669 1.21822 0.96687 1.01926 0.95182 1.21482 0.94275 0.97516 1.01712 1.21526 1.00987 0.97748 0.94585 1.21442 0.93760 1.01433 0.97820 1.21404 0.96896 0.96473 0.95268 0.89244 1.20743 0.96886 0.86523 0.92485 1.42488 1.69382 1.12845 1.13258 1.19579 1.29287 0.97559 0.91205 0.91458 1.25443 1.01942 0.96776 1.01873 1.69801 1.47134 1.06880 1.37641 0.85162 0.77096 0.77756 0.80261 1.19658 1.21410 1.22372 1.22634 0.83083 0.99599 0.86377 1.43187 1.04947 1.09059 1.56673 1.23130 0.98679 0.82233 1.06722 0.87399 0.88158 0.86816 0.82649 0.75496 0.89844 0.93290 0.92962 0.89875 0.91013 0.90739 0.92579 0.93339 0.98545 0.95494 0.78919 0.93936 0.77842 0.88130 0.85742 0.86584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.09 9.34 71.23 0.67 0.58 16 2 C 0.19 2.08 6.64 41.20 0.27 2.36 16 3 C -0.30 -6.71 9.57 22.34 0.21 -6.49 16 4 C 0.38 13.27 6.96 25.44 0.18 13.45 16 5 O -0.57 -26.73 16.41 13.53 0.22 -26.51 16 6 C -0.35 -10.16 6.05 -18.63 -0.11 -10.27 16 7 C 0.57 20.16 7.74 86.62 0.67 20.83 16 8 O -0.58 -27.17 15.24 15.06 0.23 -26.94 16 9 N -0.71 -19.73 4.26 -445.95 -1.90 -21.63 16 10 C 0.16 4.93 1.90 44.99 0.09 5.01 16 11 H 0.06 2.06 7.58 -2.39 -0.02 2.04 16 12 C -0.12 -3.03 5.49 30.59 0.17 -2.87 16 13 C -0.11 -2.63 5.92 30.59 0.18 -2.45 16 14 C -0.11 -2.68 5.92 30.59 0.18 -2.50 16 15 C -0.11 -3.33 5.07 30.58 0.16 -3.18 16 16 C -0.08 -2.53 1.80 -10.81 -0.02 -2.55 16 17 H 0.09 2.55 8.14 -2.38 -0.02 2.53 16 18 C 0.16 6.41 5.57 86.38 0.48 6.89 16 19 N -0.74 -36.04 5.33 -343.44 -1.83 -37.88 16 20 C -0.24 -13.39 9.99 84.03 0.84 -12.55 16 21 H 0.07 3.64 7.83 -2.91 -0.02 3.62 16 22 C -0.07 -3.77 5.50 84.86 0.47 -3.31 16 23 N -0.96 -56.79 13.06 21.65 0.28 -56.51 16 24 Si 0.97 45.04 29.55 68.60 2.03 47.07 16 25 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 26 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 27 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 28 C 0.22 3.29 9.80 84.25 0.83 4.12 16 29 N -0.46 -3.98 2.97 -532.75 -1.58 -5.56 16 30 C 0.03 -0.06 9.98 127.77 1.28 1.22 16 31 H 0.11 -0.14 8.14 -2.39 -0.02 -0.16 16 32 H 0.10 0.05 7.97 -2.39 -0.02 0.03 16 33 H 0.11 -0.58 6.00 -2.39 -0.01 -0.60 16 34 H 0.16 3.08 8.01 -2.91 -0.02 3.06 16 35 H 0.41 8.27 6.47 -92.71 -0.60 7.67 16 36 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 37 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.05 1.35 8.14 -2.38 -0.02 1.33 16 39 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 41 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.06 2.02 7.18 -2.39 -0.02 2.01 16 43 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 44 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 45 H 0.03 1.04 7.31 -2.38 -0.02 1.02 16 46 H 0.38 19.29 6.85 -92.71 -0.63 18.66 16 47 H 0.25 14.36 8.31 -92.71 -0.77 13.58 16 48 H 0.21 1.53 6.28 -2.91 -0.02 1.51 16 49 H 0.10 -0.31 8.14 -2.39 -0.02 -0.33 16 50 H 0.12 -0.88 5.94 -2.39 -0.01 -0.89 16 51 H 0.12 -0.53 7.86 -2.39 -0.02 -0.55 16 Total: -1.00 -96.41 404.53 3.70 -92.71 By element: Atomic # 1 Polarization: 27.23 SS G_CDS: -0.28 Total: 26.95 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: 6.53 Total: 8.28 kcal Atomic # 7 Polarization: -116.54 SS G_CDS: -5.03 Total: -121.57 kcal Atomic # 8 Polarization: -53.90 SS G_CDS: 0.45 Total: -53.45 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -96.41 3.70 -92.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733071442.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.483 kcal (2) G-P(sol) polarization free energy of solvation -96.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds