Wall clock time and date at job start Wed Apr 1 2020 04:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34854 * 119.10055 * 2 1 4 4 C 1.41684 * 119.33713 * 179.73743 * 3 2 1 5 5 O 1.22087 * 121.06586 * 180.25467 * 4 3 2 6 6 C 1.47096 * 117.86348 * 0.53620 * 4 3 2 7 7 C 1.47283 * 120.88204 * 179.73517 * 6 4 3 8 8 O 1.21618 * 119.99825 * 359.72674 * 7 6 4 9 9 N 1.34774 * 120.00203 * 179.72035 * 7 6 4 10 10 C 1.46501 * 120.00219 * 180.02562 * 9 7 6 11 11 H 1.08998 * 109.46895 * 35.00230 * 10 9 7 12 12 C 1.53001 * 109.47220 * 275.00253 * 10 9 7 13 13 C 1.53005 * 109.47190 * 300.00270 * 12 10 9 14 14 C 1.53001 * 109.46626 * 299.99935 * 13 12 10 15 15 C 1.53001 * 109.47284 * 60.00122 * 14 13 12 16 16 C 1.52998 * 109.46930 * 299.99503 * 15 14 13 17 17 H 1.08994 * 109.47479 * 300.00332 * 16 15 14 18 18 C 1.53001 * 109.46930 * 180.02562 * 16 15 14 19 19 N 1.46501 * 109.47230 * 65.00610 * 18 16 15 20 20 C 1.36931 * 120.00078 * 180.02562 * 19 18 16 21 21 H 1.08001 * 119.99963 * 359.97438 * 20 19 18 22 22 C 1.38813 * 119.99990 * 179.97438 * 20 19 18 23 23 N 1.31622 * 120.00008 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 119.99999 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.46844 * 60.00510 * 24 22 20 26 26 H 1.48500 * 109.46919 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.46936 * 300.00112 * 24 22 20 28 28 C 1.37990 * 118.23499 * 359.46940 * 6 4 3 29 29 N 1.34346 * 120.37449 * 0.26680 * 28 6 4 30 30 C 1.46500 * 118.80932 * 179.97438 * 29 28 6 31 31 H 1.09001 * 109.47641 * 264.05536 * 1 2 3 32 32 H 1.09004 * 109.47249 * 24.05694 * 1 2 3 33 33 H 1.08998 * 109.47320 * 144.05493 * 1 2 3 34 34 H 1.08002 * 120.33478 * 359.97438 * 3 2 1 35 35 H 0.97006 * 119.99774 * 0.02562 * 9 7 6 36 36 H 1.08994 * 109.47311 * 179.97438 * 12 10 9 37 37 H 1.09000 * 109.47023 * 59.99600 * 12 10 9 38 38 H 1.09001 * 109.47175 * 180.02562 * 13 12 10 39 39 H 1.08994 * 109.47326 * 59.99603 * 13 12 10 40 40 H 1.09003 * 109.47565 * 299.99895 * 14 13 12 41 41 H 1.08998 * 109.47012 * 180.02562 * 14 13 12 42 42 H 1.08994 * 109.47311 * 59.99939 * 15 14 13 43 43 H 1.09000 * 109.47023 * 180.02562 * 15 14 13 44 44 H 1.09005 * 109.47262 * 185.00416 * 18 16 15 45 45 H 1.09003 * 109.47301 * 304.99904 * 18 16 15 46 46 H 0.96993 * 119.99582 * 359.97438 * 19 18 16 47 47 H 0.96999 * 119.99913 * 179.97438 * 23 22 20 48 48 H 1.08000 * 119.81111 * 180.24639 * 28 6 4 49 49 H 1.08994 * 109.46920 * 95.96543 * 30 29 28 50 50 H 1.08998 * 109.47040 * 215.97073 * 30 29 28 51 51 H 1.08999 * 109.46727 * 335.96493 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1628 1.1783 0.0000 4 6 3.5796 1.1842 0.0057 5 8 4.2053 2.2325 0.0105 6 6 4.2725 -0.1134 -0.0008 7 6 5.7436 -0.1848 -0.0014 8 8 6.4021 0.8377 -0.0014 9 7 6.3601 -1.3833 -0.0017 10 6 7.8234 -1.4543 -0.0016 11 1 8.2271 -0.6313 0.5881 12 6 8.3390 -1.3530 -1.4386 13 6 7.7723 -2.5083 -2.2664 14 6 8.2182 -3.8390 -1.6571 15 6 7.7026 -3.9403 -0.2202 16 6 8.2694 -2.7851 0.6076 17 1 9.3580 -2.8380 0.6076 18 6 7.7543 -2.8868 2.0447 19 7 8.2805 -4.1041 2.6671 20 6 7.9520 -4.4085 3.9611 21 1 7.3052 -3.7509 4.5230 22 6 8.4502 -5.5622 4.5507 23 7 9.2388 -6.3634 3.8660 24 14 8.0026 -5.9771 6.3162 25 1 6.5293 -6.1224 6.4322 26 1 8.6584 -7.2509 6.7069 27 1 8.4647 -4.8875 7.2131 28 6 3.5076 -1.2619 -0.0008 29 7 2.1664 -1.1848 -0.0004 30 6 1.3879 -2.4259 -0.0009 31 1 -0.3634 -0.1064 1.0221 32 1 -0.3634 0.9384 -0.4189 33 1 -0.3634 -0.8320 -0.6032 34 1 1.6136 2.1083 -0.0004 35 1 5.8349 -2.1989 -0.0019 36 1 9.4277 -1.4055 -1.4385 37 1 8.0212 -0.4050 -1.8726 38 1 8.1400 -2.4363 -3.2900 39 1 6.6836 -2.4554 -2.2664 40 1 9.3070 -3.8919 -1.6571 41 1 7.8149 -4.6620 -2.2471 42 1 6.6140 -3.8874 -0.2202 43 1 8.0208 -4.8881 0.2140 44 1 8.0852 -2.0166 2.6117 45 1 6.6649 -2.9235 2.0385 46 1 8.8611 -4.6948 2.1623 47 1 9.5872 -7.1694 4.2782 48 1 3.9900 -2.2282 -0.0015 49 1 1.1047 -2.6775 1.0211 50 1 0.4901 -2.2914 -0.6042 51 1 1.9899 -3.2321 -0.4202 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733071444.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:37 Heat of formation + Delta-G solvation = -33.949496 kcal Electronic energy + Delta-G solvation = -31552.153127 eV Core-core repulsion = 27451.834186 eV Total energy + Delta-G solvation = -4100.318941 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.46096 -40.00134 -38.30677 -37.41174 -34.63264 -34.00154 -33.37934 -32.67305 -31.88582 -29.96090 -29.50595 -28.15803 -27.20291 -25.21663 -24.46312 -23.00885 -22.58001 -21.80929 -21.01374 -20.48342 -18.92433 -18.44959 -17.69148 -17.11596 -16.46188 -16.37564 -16.01657 -15.42762 -15.17874 -14.71714 -14.64933 -14.57364 -14.09294 -13.94723 -13.80808 -13.67373 -13.59247 -13.33838 -13.27835 -13.21607 -13.02767 -12.75863 -12.66655 -12.29060 -12.16535 -12.01763 -11.90447 -11.62027 -11.36705 -10.90208 -10.87855 -10.69921 -10.33935 -10.22107 -9.96584 -9.89101 -9.81307 -9.73501 -9.60355 -9.16855 -8.89043 -8.73383 -8.12028 -6.92111 -5.77808 -3.05833 0.67348 1.09849 2.05620 3.07118 3.31664 3.41938 3.47210 3.47981 3.75638 3.84731 4.10330 4.22221 4.41477 4.51861 4.56926 4.75142 4.82908 4.85760 4.89442 4.92936 4.94272 4.97844 5.15035 5.26131 5.30349 5.37979 5.45713 5.54185 5.56904 5.64984 5.68545 5.73680 5.80548 5.87506 6.08618 6.12923 6.18527 6.24928 6.27166 6.30292 6.33179 6.42476 6.49427 6.51880 6.67790 6.72210 6.84523 6.92187 7.68764 7.74608 8.10360 8.41585 8.55153 9.52709 10.11012 10.46089 11.45011 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009030 B = 0.003211 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3100.164175 B = 8718.858103 C =10271.079552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.154 3.846 3 C -0.270 4.270 4 C 0.408 3.592 5 O -0.481 6.481 6 C -0.295 4.295 7 C 0.572 3.428 8 O -0.514 6.514 9 N -0.720 5.720 10 C 0.158 3.842 11 H 0.088 0.912 12 C -0.129 4.129 13 C -0.114 4.114 14 C -0.121 4.121 15 C -0.108 4.108 16 C -0.102 4.102 17 H 0.086 0.914 18 C 0.161 3.839 19 N -0.731 5.731 20 C -0.238 4.238 21 H 0.068 0.932 22 C -0.013 4.013 23 N -0.934 5.934 24 Si 0.906 3.094 25 H -0.287 1.287 26 H -0.291 1.291 27 H -0.286 1.286 28 C 0.174 3.826 29 N -0.471 5.471 30 C 0.047 3.953 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.151 0.849 35 H 0.391 0.609 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.056 0.944 39 H 0.056 0.944 40 H 0.063 0.937 41 H 0.057 0.943 42 H 0.050 0.950 43 H 0.078 0.922 44 H 0.019 0.981 45 H 0.016 0.984 46 H 0.384 0.616 47 H 0.255 0.745 48 H 0.166 0.834 49 H 0.084 0.916 50 H 0.093 0.907 51 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.385 5.409 -14.843 25.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.049 3.951 3 C -0.294 4.294 4 C 0.294 3.706 5 O -0.361 6.361 6 C -0.306 4.306 7 C 0.359 3.641 8 O -0.389 6.389 9 N -0.374 5.374 10 C 0.053 3.947 11 H 0.107 0.893 12 C -0.168 4.168 13 C -0.152 4.152 14 C -0.158 4.158 15 C -0.146 4.146 16 C -0.121 4.121 17 H 0.104 0.896 18 C 0.033 3.967 19 N -0.375 5.375 20 C -0.370 4.370 21 H 0.086 0.914 22 C -0.209 4.209 23 N -0.583 5.583 24 Si 0.737 3.263 25 H -0.214 1.214 26 H -0.217 1.217 27 H -0.213 1.213 28 C 0.043 3.957 29 N -0.158 5.158 30 C -0.094 4.094 31 H 0.107 0.893 32 H 0.111 0.889 33 H 0.099 0.901 34 H 0.169 0.831 35 H 0.227 0.773 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.082 0.918 41 H 0.076 0.924 42 H 0.069 0.931 43 H 0.097 0.903 44 H 0.037 0.963 45 H 0.034 0.966 46 H 0.218 0.782 47 H 0.065 0.935 48 H 0.183 0.817 49 H 0.103 0.897 50 H 0.112 0.888 51 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -18.748 6.570 -14.664 24.693 hybrid contribution -0.350 -1.164 0.953 1.545 sum -19.098 5.406 -13.711 24.124 Atomic orbital electron populations 1.21187 0.88097 1.04963 1.04169 1.20263 0.94845 0.85002 0.95009 1.22281 0.96376 0.97147 1.13613 1.18148 0.88201 0.87919 0.76377 1.90821 1.69935 1.33215 1.42176 1.22582 0.94572 0.95021 1.18469 1.17449 0.86005 0.83735 0.76908 1.90837 1.65788 1.33964 1.48343 1.46021 1.07666 1.07478 1.76255 1.20912 0.79146 0.98598 0.96041 0.89348 1.21908 1.00706 0.98696 0.95456 1.21478 1.00429 0.94830 0.98439 1.21592 1.01218 0.96664 0.96362 1.21511 0.99327 0.99595 0.94132 1.21630 1.01536 0.92975 0.95971 0.89612 1.20634 0.95780 0.90528 0.89762 1.42364 1.58884 1.23601 1.12672 1.19181 1.24129 1.04416 0.89229 0.91399 1.24713 1.00271 0.97702 0.98239 1.69644 1.37443 1.14726 1.36479 0.86288 0.77674 0.77393 0.84956 1.21399 1.21694 1.21266 1.22253 0.82168 1.00011 0.91273 1.42555 1.05297 1.07243 1.60677 1.22576 0.97790 0.84328 1.04745 0.89276 0.88923 0.90131 0.83115 0.77340 0.91069 0.91614 0.92546 0.92485 0.91847 0.92392 0.93090 0.90310 0.96321 0.96635 0.78222 0.93503 0.81654 0.89713 0.88830 0.88656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.34 9.34 36.00 0.34 -0.01 16 2 C 0.15 1.07 6.64 -82.13 -0.54 0.53 16 3 C -0.27 -2.87 9.57 -39.47 -0.38 -3.25 16 4 C 0.41 6.40 6.97 -34.68 -0.24 6.16 16 5 O -0.48 -9.94 16.41 -15.18 -0.25 -10.19 16 6 C -0.30 -4.07 6.05 -102.72 -0.62 -4.69 16 7 C 0.57 9.38 7.74 -12.58 -0.10 9.28 16 8 O -0.51 -10.88 15.24 -14.76 -0.22 -11.11 16 9 N -0.72 -9.76 3.57 -54.93 -0.20 -9.95 16 10 C 0.16 2.30 2.23 -67.93 -0.15 2.15 16 11 H 0.09 1.50 7.58 -51.93 -0.39 1.11 16 12 C -0.13 -1.67 5.60 -26.73 -0.15 -1.82 16 13 C -0.11 -1.27 5.77 -26.73 -0.15 -1.42 16 14 C -0.12 -1.40 5.92 -26.73 -0.16 -1.56 16 15 C -0.11 -1.49 4.91 -26.73 -0.13 -1.62 16 16 C -0.10 -1.58 2.02 -90.62 -0.18 -1.77 16 17 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 18 C 0.16 3.17 5.42 -4.04 -0.02 3.15 16 19 N -0.73 -17.96 5.33 -59.91 -0.32 -18.28 16 20 C -0.24 -6.59 9.99 -15.06 -0.15 -6.74 16 21 H 0.07 1.85 7.83 -52.49 -0.41 1.43 16 22 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 23 N -0.93 -27.75 13.06 55.49 0.72 -27.02 16 24 Si 0.91 22.21 29.55 -169.99 -5.02 17.19 16 25 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 26 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 27 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 28 C 0.17 1.51 9.80 -16.54 -0.16 1.34 16 29 N -0.47 -2.95 2.97 -119.75 -0.36 -3.30 16 30 C 0.05 0.09 9.98 59.85 0.60 0.69 16 31 H 0.09 0.18 8.14 -51.93 -0.42 -0.25 16 32 H 0.09 0.20 7.97 -51.93 -0.41 -0.21 16 33 H 0.08 0.06 6.00 -51.93 -0.31 -0.25 16 34 H 0.15 1.38 8.01 -52.49 -0.42 0.96 16 35 H 0.39 4.35 4.75 -40.82 -0.19 4.15 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.61 7.60 -51.93 -0.39 0.21 16 40 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.05 0.63 6.50 -51.93 -0.34 0.29 16 43 H 0.08 1.30 7.18 -51.93 -0.37 0.92 16 44 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 45 H 0.02 0.30 7.61 -51.93 -0.40 -0.09 16 46 H 0.38 9.82 6.85 -40.82 -0.28 9.54 16 47 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 48 H 0.17 0.97 6.28 -52.49 -0.33 0.64 16 49 H 0.08 0.13 8.14 -51.93 -0.42 -0.29 16 50 H 0.09 0.00 5.94 -51.93 -0.31 -0.30 16 51 H 0.09 0.08 7.86 -51.93 -0.41 -0.33 16 LS Contribution 400.43 15.07 6.03 6.03 Total: -1.00 -39.50 400.43 -9.83 -49.32 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -7.91 Total: 7.34 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: -2.31 Total: -0.04 kcal Atomic # 7 Polarization: -58.41 SS G_CDS: -0.15 Total: -58.55 kcal Atomic # 8 Polarization: -20.82 SS G_CDS: -0.47 Total: -21.29 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -39.50 -9.83 -49.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733071444.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.373 kcal (2) G-P(sol) polarization free energy of solvation -39.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds