Wall clock time and date at job start Wed Apr 1 2020 04:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34854 * 119.10055 * 2 1 4 4 C 1.41684 * 119.33713 * 179.73743 * 3 2 1 5 5 O 1.22087 * 121.06586 * 180.25467 * 4 3 2 6 6 C 1.47096 * 117.86348 * 0.53620 * 4 3 2 7 7 C 1.47283 * 120.88204 * 179.73517 * 6 4 3 8 8 O 1.21618 * 119.99825 * 359.72674 * 7 6 4 9 9 N 1.34774 * 120.00203 * 179.72035 * 7 6 4 10 10 C 1.46501 * 120.00219 * 180.02562 * 9 7 6 11 11 H 1.08998 * 109.46895 * 35.00230 * 10 9 7 12 12 C 1.53001 * 109.47220 * 275.00253 * 10 9 7 13 13 C 1.53005 * 109.47190 * 300.00270 * 12 10 9 14 14 C 1.53001 * 109.46626 * 299.99935 * 13 12 10 15 15 C 1.53001 * 109.47284 * 60.00122 * 14 13 12 16 16 C 1.52998 * 109.46930 * 299.99503 * 15 14 13 17 17 H 1.08994 * 109.47479 * 300.00332 * 16 15 14 18 18 C 1.53001 * 109.46930 * 180.02562 * 16 15 14 19 19 N 1.46501 * 109.47230 * 65.00610 * 18 16 15 20 20 C 1.36931 * 120.00078 * 180.02562 * 19 18 16 21 21 H 1.08001 * 119.99963 * 359.97438 * 20 19 18 22 22 C 1.38813 * 119.99990 * 179.97438 * 20 19 18 23 23 N 1.31622 * 120.00008 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 119.99999 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.46844 * 60.00510 * 24 22 20 26 26 H 1.48500 * 109.46919 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.46936 * 300.00112 * 24 22 20 28 28 C 1.37990 * 118.23499 * 359.46940 * 6 4 3 29 29 N 1.34346 * 120.37449 * 0.26680 * 28 6 4 30 30 C 1.46500 * 118.80932 * 179.97438 * 29 28 6 31 31 H 1.09001 * 109.47641 * 264.05536 * 1 2 3 32 32 H 1.09004 * 109.47249 * 24.05694 * 1 2 3 33 33 H 1.08998 * 109.47320 * 144.05493 * 1 2 3 34 34 H 1.08002 * 120.33478 * 359.97438 * 3 2 1 35 35 H 0.97006 * 119.99774 * 0.02562 * 9 7 6 36 36 H 1.08994 * 109.47311 * 179.97438 * 12 10 9 37 37 H 1.09000 * 109.47023 * 59.99600 * 12 10 9 38 38 H 1.09001 * 109.47175 * 180.02562 * 13 12 10 39 39 H 1.08994 * 109.47326 * 59.99603 * 13 12 10 40 40 H 1.09003 * 109.47565 * 299.99895 * 14 13 12 41 41 H 1.08998 * 109.47012 * 180.02562 * 14 13 12 42 42 H 1.08994 * 109.47311 * 59.99939 * 15 14 13 43 43 H 1.09000 * 109.47023 * 180.02562 * 15 14 13 44 44 H 1.09005 * 109.47262 * 185.00416 * 18 16 15 45 45 H 1.09003 * 109.47301 * 304.99904 * 18 16 15 46 46 H 0.96993 * 119.99582 * 359.97438 * 19 18 16 47 47 H 0.96999 * 119.99913 * 179.97438 * 23 22 20 48 48 H 1.08000 * 119.81111 * 180.24639 * 28 6 4 49 49 H 1.08994 * 109.46920 * 95.96543 * 30 29 28 50 50 H 1.08998 * 109.47040 * 215.97073 * 30 29 28 51 51 H 1.08999 * 109.46727 * 335.96493 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1628 1.1783 0.0000 4 6 3.5796 1.1842 0.0057 5 8 4.2053 2.2325 0.0105 6 6 4.2725 -0.1134 -0.0008 7 6 5.7436 -0.1848 -0.0014 8 8 6.4021 0.8377 -0.0014 9 7 6.3601 -1.3833 -0.0017 10 6 7.8234 -1.4543 -0.0016 11 1 8.2271 -0.6313 0.5881 12 6 8.3390 -1.3530 -1.4386 13 6 7.7723 -2.5083 -2.2664 14 6 8.2182 -3.8390 -1.6571 15 6 7.7026 -3.9403 -0.2202 16 6 8.2694 -2.7851 0.6076 17 1 9.3580 -2.8380 0.6076 18 6 7.7543 -2.8868 2.0447 19 7 8.2805 -4.1041 2.6671 20 6 7.9520 -4.4085 3.9611 21 1 7.3052 -3.7509 4.5230 22 6 8.4502 -5.5622 4.5507 23 7 9.2388 -6.3634 3.8660 24 14 8.0026 -5.9771 6.3162 25 1 6.5293 -6.1224 6.4322 26 1 8.6584 -7.2509 6.7069 27 1 8.4647 -4.8875 7.2131 28 6 3.5076 -1.2619 -0.0008 29 7 2.1664 -1.1848 -0.0004 30 6 1.3879 -2.4259 -0.0009 31 1 -0.3634 -0.1064 1.0221 32 1 -0.3634 0.9384 -0.4189 33 1 -0.3634 -0.8320 -0.6032 34 1 1.6136 2.1083 -0.0004 35 1 5.8349 -2.1989 -0.0019 36 1 9.4277 -1.4055 -1.4385 37 1 8.0212 -0.4050 -1.8726 38 1 8.1400 -2.4363 -3.2900 39 1 6.6836 -2.4554 -2.2664 40 1 9.3070 -3.8919 -1.6571 41 1 7.8149 -4.6620 -2.2471 42 1 6.6140 -3.8874 -0.2202 43 1 8.0208 -4.8881 0.2140 44 1 8.0852 -2.0166 2.6117 45 1 6.6649 -2.9235 2.0385 46 1 8.8611 -4.6948 2.1623 47 1 9.5872 -7.1694 4.2782 48 1 3.9900 -2.2282 -0.0015 49 1 1.1047 -2.6775 1.0211 50 1 0.4901 -2.2914 -0.6042 51 1 1.9899 -3.2321 -0.4202 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733071444.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:36 Heat of formation + Delta-G solvation = -60.620828 kcal Electronic energy + Delta-G solvation = -31553.309683 eV Core-core repulsion = 27451.834186 eV Total energy + Delta-G solvation = -4101.475496 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.26674 -41.16052 -39.42766 -38.62042 -36.43994 -35.00353 -34.18045 -33.72559 -33.47767 -31.23255 -30.89158 -28.86887 -27.67643 -26.90271 -25.27298 -24.66902 -23.73181 -22.82631 -22.09072 -21.72828 -20.07933 -19.52980 -19.02158 -18.43786 -17.28941 -17.02645 -16.93899 -16.77208 -16.48379 -16.20670 -15.91769 -15.61882 -15.32443 -15.10771 -15.02048 -14.79924 -14.69584 -14.50665 -14.23469 -14.00166 -13.83264 -13.82845 -13.41251 -13.33257 -13.09750 -12.94967 -12.84862 -12.70109 -12.67300 -12.58732 -12.51676 -12.14473 -11.92401 -11.83664 -11.39718 -11.19943 -11.11556 -11.01460 -10.84178 -10.49373 -10.31197 -9.98721 -9.05083 -8.97717 -7.94038 -5.22264 -0.20558 0.32620 1.46613 1.47131 1.50492 1.56345 1.92618 2.17850 2.56287 2.80271 3.21012 3.39027 3.57304 3.59365 3.66547 3.78264 3.82171 3.86612 4.09904 4.19767 4.23663 4.26043 4.41665 4.43381 4.46321 4.49556 4.53091 4.60374 4.69389 4.72078 4.73593 4.75586 4.83114 4.86393 4.91078 5.03860 5.10465 5.15170 5.18761 5.29302 5.30145 5.32322 5.37641 5.48586 5.49750 5.54674 5.63835 5.70380 5.80103 6.28068 6.62822 7.09776 7.35374 7.37380 8.10138 8.36116 9.28850 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009030 B = 0.003211 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3100.164175 B = 8718.858103 C =10271.079552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.186 3.814 3 C -0.304 4.304 4 C 0.383 3.617 5 O -0.567 6.567 6 C -0.350 4.350 7 C 0.570 3.430 8 O -0.578 6.578 9 N -0.704 5.704 10 C 0.164 3.836 11 H 0.055 0.945 12 C -0.124 4.124 13 C -0.106 4.106 14 C -0.113 4.113 15 C -0.102 4.102 16 C -0.087 4.087 17 H 0.075 0.925 18 C 0.162 3.838 19 N -0.738 5.738 20 C -0.248 4.248 21 H 0.069 0.931 22 C -0.069 4.069 23 N -0.965 5.965 24 Si 0.969 3.031 25 H -0.273 1.273 26 H -0.294 1.294 27 H -0.286 1.286 28 C 0.217 3.783 29 N -0.455 5.455 30 C 0.030 3.970 31 H 0.108 0.892 32 H 0.099 0.901 33 H 0.114 0.886 34 H 0.155 0.845 35 H 0.405 0.595 36 H 0.075 0.925 37 H 0.049 0.951 38 H 0.073 0.927 39 H 0.067 0.933 40 H 0.058 0.942 41 H 0.080 0.920 42 H 0.072 0.928 43 H 0.054 0.946 44 H -0.005 1.005 45 H 0.029 0.971 46 H 0.377 0.623 47 H 0.252 0.748 48 H 0.204 0.796 49 H 0.101 0.899 50 H 0.124 0.876 51 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.427 2.064 -15.774 28.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.079 3.921 3 C -0.327 4.327 4 C 0.276 3.724 5 O -0.456 6.456 6 C -0.361 4.361 7 C 0.359 3.641 8 O -0.458 6.458 9 N -0.358 5.358 10 C 0.058 3.942 11 H 0.073 0.927 12 C -0.163 4.163 13 C -0.143 4.143 14 C -0.150 4.150 15 C -0.140 4.140 16 C -0.106 4.106 17 H 0.093 0.907 18 C 0.036 3.964 19 N -0.381 5.381 20 C -0.379 4.379 21 H 0.087 0.913 22 C -0.261 4.261 23 N -0.616 5.616 24 Si 0.798 3.202 25 H -0.199 1.199 26 H -0.220 1.220 27 H -0.212 1.212 28 C 0.082 3.918 29 N -0.138 5.138 30 C -0.108 4.108 31 H 0.126 0.874 32 H 0.118 0.882 33 H 0.132 0.868 34 H 0.173 0.827 35 H 0.244 0.756 36 H 0.094 0.906 37 H 0.067 0.933 38 H 0.092 0.908 39 H 0.086 0.914 40 H 0.077 0.923 41 H 0.099 0.901 42 H 0.090 0.910 43 H 0.072 0.928 44 H 0.013 0.987 45 H 0.047 0.953 46 H 0.210 0.790 47 H 0.061 0.939 48 H 0.220 0.780 49 H 0.119 0.881 50 H 0.142 0.858 51 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -22.884 3.162 -15.607 27.880 hybrid contribution 0.727 -0.251 1.262 1.478 sum -22.157 2.911 -14.346 26.556 Atomic orbital electron populations 1.21403 0.83917 1.06917 1.05984 1.20853 0.97076 0.83887 0.90307 1.22155 0.94082 0.99421 1.17082 1.18944 0.90348 0.87806 0.75314 1.90763 1.71708 1.35531 1.47590 1.22227 0.93415 0.96229 1.24179 1.17913 0.87240 0.83301 0.75633 1.90795 1.67340 1.36117 1.51499 1.45801 1.07146 1.07403 1.75478 1.20726 0.79885 0.96699 0.96853 0.92714 1.21847 1.01095 0.99103 0.94219 1.21440 1.00984 0.93212 0.98706 1.21534 1.01066 0.97603 0.94818 1.21452 1.00538 0.96930 0.95036 1.21447 1.00916 0.94429 0.93855 0.90678 1.20719 0.96276 0.87740 0.91683 1.42491 1.58879 1.24667 1.12057 1.19529 1.23641 1.04284 0.90482 0.91332 1.25477 1.00698 0.97865 1.02098 1.69790 1.38714 1.15064 1.38000 0.85281 0.77953 0.76684 0.80243 1.19931 1.21964 1.21219 1.22598 0.83106 0.99510 0.86569 1.43178 1.04907 1.09051 1.56683 1.23137 0.98697 0.82231 1.06750 0.87401 0.88203 0.86783 0.82706 0.75622 0.90611 0.93259 0.90806 0.91416 0.92272 0.90148 0.90973 0.92751 0.98727 0.95286 0.79003 0.93927 0.77979 0.88090 0.85760 0.86507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.02 9.34 71.24 0.67 0.64 16 2 C 0.19 1.98 6.64 41.20 0.27 2.26 16 3 C -0.30 -6.58 9.57 22.34 0.21 -6.37 16 4 C 0.38 13.12 6.97 25.45 0.18 13.29 16 5 O -0.57 -26.61 16.41 13.54 0.22 -26.39 16 6 C -0.35 -9.92 6.05 -18.63 -0.11 -10.04 16 7 C 0.57 19.89 7.74 86.62 0.67 20.56 16 8 O -0.58 -27.12 15.24 15.05 0.23 -26.89 16 9 N -0.70 -19.16 3.57 -445.94 -1.59 -20.75 16 10 C 0.16 4.96 2.23 44.99 0.10 5.06 16 11 H 0.05 2.04 7.58 -2.39 -0.02 2.02 16 12 C -0.12 -3.23 5.60 30.60 0.17 -3.06 16 13 C -0.11 -2.10 5.77 30.60 0.18 -1.92 16 14 C -0.11 -2.31 5.92 30.59 0.18 -2.13 16 15 C -0.10 -2.63 4.91 30.59 0.15 -2.48 16 16 C -0.09 -2.73 2.02 -10.79 -0.02 -2.75 16 17 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 18 C 0.16 6.50 5.42 86.38 0.47 6.97 16 19 N -0.74 -36.57 5.33 -343.44 -1.83 -38.40 16 20 C -0.25 -13.69 9.99 84.03 0.84 -12.85 16 21 H 0.07 3.71 7.83 -2.91 -0.02 3.68 16 22 C -0.07 -3.87 5.50 84.86 0.47 -3.41 16 23 N -0.97 -57.56 13.06 21.65 0.28 -57.28 16 24 Si 0.97 45.34 29.55 68.60 2.03 47.36 16 25 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 26 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 27 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 28 C 0.22 3.12 9.80 84.25 0.83 3.95 16 29 N -0.46 -3.63 2.97 -532.78 -1.58 -5.21 16 30 C 0.03 -0.09 9.98 127.77 1.28 1.19 16 31 H 0.11 -0.19 8.14 -2.39 -0.02 -0.21 16 32 H 0.10 0.01 7.97 -2.38 -0.02 -0.01 16 33 H 0.11 -0.65 6.00 -2.39 -0.01 -0.67 16 34 H 0.16 3.02 8.01 -2.91 -0.02 3.00 16 35 H 0.41 8.14 4.75 -92.70 -0.44 7.70 16 36 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.07 1.22 7.60 -2.39 -0.02 1.20 16 40 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.07 1.53 6.50 -2.39 -0.02 1.52 16 43 H 0.05 1.72 7.18 -2.39 -0.02 1.70 16 44 H -0.01 -0.24 8.14 -2.38 -0.02 -0.26 16 45 H 0.03 1.10 7.61 -2.39 -0.02 1.08 16 46 H 0.38 19.58 6.85 -92.71 -0.63 18.95 16 47 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 48 H 0.20 1.36 6.28 -2.91 -0.02 1.34 16 49 H 0.10 -0.41 8.14 -2.39 -0.02 -0.43 16 50 H 0.12 -0.98 5.94 -2.39 -0.01 -0.99 16 51 H 0.12 -0.67 7.86 -2.39 -0.02 -0.69 16 Total: -1.00 -97.27 400.43 4.16 -93.11 By element: Atomic # 1 Polarization: 25.65 SS G_CDS: -0.12 Total: 25.53 kcal Atomic # 6 Polarization: 2.39 SS G_CDS: 6.52 Total: 8.91 kcal Atomic # 7 Polarization: -116.92 SS G_CDS: -4.72 Total: -121.64 kcal Atomic # 8 Polarization: -53.73 SS G_CDS: 0.45 Total: -53.28 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.36 kcal Total: -97.27 4.16 -93.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733071444.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.487 kcal (2) G-P(sol) polarization free energy of solvation -97.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds