Wall clock time and date at job start Wed Apr 1 2020 04:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30011 * 127.32988 * 2 1 4 4 O 1.20663 * 112.30145 * 179.97438 * 3 2 1 5 5 C 1.33493 * 113.15437 * 0.02562 * 4 3 2 6 6 C 1.50701 * 126.82848 * 179.97438 * 5 4 3 7 7 C 1.52997 * 117.49765 * 8.76421 * 6 5 4 8 8 C 1.53000 * 117.49491 * 300.10270 * 6 5 4 9 9 C 1.37356 * 106.34151 * 359.97438 * 5 4 3 10 10 C 1.47403 * 128.56722 * 179.97438 * 9 5 4 11 11 O 1.21610 * 119.99903 * 270.02149 * 10 9 5 12 12 N 1.34767 * 120.00137 * 90.01431 * 10 9 5 13 13 C 1.46925 * 120.63315 * 359.72725 * 12 10 9 14 14 C 1.53622 * 108.54707 * 126.36741 * 13 12 10 15 15 C 1.53039 * 109.24263 * 54.85432 * 14 13 12 16 16 C 1.53002 * 109.45958 * 178.49278 * 15 14 13 17 17 C 1.53006 * 109.46960 * 295.06984 * 16 15 14 18 18 N 1.46507 * 109.46632 * 180.02562 * 17 16 15 19 19 C 1.36935 * 119.99573 * 180.02562 * 18 17 16 20 20 H 1.08005 * 120.00210 * 359.97438 * 19 18 17 21 21 C 1.38808 * 119.99892 * 180.02562 * 19 18 17 22 22 N 1.31624 * 120.00319 * 359.97438 * 21 19 18 23 23 Si 1.86808 * 119.99960 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46845 * 89.99938 * 23 21 19 25 25 H 1.48504 * 109.46654 * 209.99602 * 23 21 19 26 26 H 1.48496 * 109.47248 * 329.99795 * 23 21 19 27 27 C 1.53040 * 109.53907 * 298.51258 * 15 14 13 28 28 C 1.46925 * 120.63129 * 180.02562 * 12 10 9 29 29 H 1.08996 * 109.46955 * 90.02599 * 1 2 3 30 30 H 1.09004 * 109.46954 * 210.02330 * 1 2 3 31 31 H 1.09001 * 109.47301 * 330.02242 * 1 2 3 32 32 H 1.09000 * 115.54719 * 154.44135 * 6 5 4 33 33 H 1.08991 * 117.50227 * 0.02562 * 7 6 5 34 34 H 1.08999 * 117.49408 * 145.02688 * 7 6 5 35 35 H 1.08999 * 117.50014 * 214.97938 * 8 6 5 36 36 H 1.09004 * 117.50212 * 359.97438 * 8 6 5 37 37 H 1.09003 * 109.58840 * 246.20193 * 13 12 10 38 38 H 1.09004 * 109.58739 * 6.61899 * 13 12 10 39 39 H 1.09007 * 109.63039 * 294.86651 * 14 13 12 40 40 H 1.08999 * 109.43369 * 174.72947 * 14 13 12 41 41 H 1.09001 * 109.44487 * 58.53199 * 15 14 13 42 42 H 1.08996 * 109.46953 * 55.07199 * 16 15 14 43 43 H 1.08999 * 109.47186 * 175.06770 * 16 15 14 44 44 H 1.08992 * 109.47014 * 300.00100 * 17 16 15 45 45 H 1.09000 * 109.46763 * 60.00373 * 17 16 15 46 46 H 0.96993 * 119.99984 * 359.97438 * 18 17 16 47 47 H 0.96991 * 120.00379 * 180.02562 * 22 21 19 48 48 H 1.08997 * 109.49506 * 301.41508 * 27 15 14 49 49 H 1.08995 * 109.49336 * 181.31518 * 27 15 14 50 50 H 1.09001 * 109.58737 * 353.37717 * 28 12 10 51 51 H 1.09005 * 109.58654 * 113.66190 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2954 1.0338 0.0000 4 8 3.4608 0.7209 0.0005 5 6 3.6495 -0.6006 0.0004 6 6 4.9713 -1.3244 0.0003 7 6 6.2351 -0.4872 0.2072 8 6 5.9178 -1.0664 -1.1737 9 6 2.3993 -1.1695 0.0003 10 6 2.0402 -2.5991 -0.0004 11 8 1.8923 -3.1884 -1.0538 12 7 1.8759 -3.2532 1.1664 13 6 2.0572 -2.5565 2.4472 14 6 0.7958 -2.7640 3.2991 15 6 0.5188 -4.2631 3.4333 16 6 -0.7152 -4.4768 4.3123 17 6 -0.4204 -3.9893 5.7323 18 7 -1.6019 -4.1945 6.5741 19 6 -1.5737 -3.8304 7.8938 20 1 -0.6805 -3.3924 8.3143 21 6 -2.6929 -4.0253 8.6916 22 7 -3.7813 -4.5596 8.1793 23 14 -2.6543 -3.5292 10.4922 24 1 -3.1095 -2.1222 10.6278 25 1 -3.5547 -4.4180 11.2697 26 1 -1.2681 -3.6532 11.0102 27 6 0.2681 -4.8633 2.0480 28 6 1.5186 -4.6783 1.1819 29 1 -0.3633 -0.0005 -1.0276 30 1 -0.3633 -0.8898 0.5142 31 1 -0.3634 0.8902 0.5135 32 1 4.9575 -2.3284 0.4245 33 1 6.1105 0.5869 0.3438 34 1 7.0530 -0.9406 0.7672 35 1 6.5272 -1.9006 -1.5216 36 1 5.5843 -0.3736 -1.9464 37 1 2.9236 -2.9659 2.9666 38 1 2.2066 -1.4920 2.2662 39 1 -0.0541 -2.2785 2.8194 40 1 0.9511 -2.3327 4.2881 41 1 1.3793 -4.7517 3.8905 42 1 -1.5548 -3.9156 3.9024 43 1 -0.9646 -5.5376 4.3367 44 1 0.4192 -4.5505 6.1422 45 1 -0.1711 -2.9285 5.7078 46 1 -2.4041 -4.5875 6.1964 47 1 -4.5634 -4.6954 8.7366 48 1 -0.5768 -4.3580 1.5801 49 1 0.0479 -5.9262 2.1465 50 1 1.3124 -5.0144 0.1657 51 1 2.3430 -5.2572 1.5981 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753572236.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:08 Heat of formation + Delta-G solvation = 49.777209 kcal Electronic energy + Delta-G solvation = -30868.707439 eV Core-core repulsion = 26772.019161 eV Total energy + Delta-G solvation = -4096.688278 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -45.21016 -40.38051 -38.07638 -37.81716 -35.37365 -34.91285 -33.59681 -32.25249 -31.26248 -30.99845 -29.11930 -28.48033 -25.89797 -24.47391 -23.95079 -23.49618 -22.96720 -22.77959 -21.28091 -20.46492 -19.97536 -19.37355 -18.21950 -17.78884 -17.08961 -16.91623 -16.49982 -16.11302 -15.29258 -14.81796 -14.73368 -14.69746 -14.21856 -13.94388 -13.76237 -13.71047 -13.66087 -13.59446 -13.29335 -13.16734 -12.89441 -12.71921 -12.48117 -12.29367 -12.11513 -11.84351 -11.56177 -11.43079 -11.32126 -11.19023 -11.03126 -10.97035 -10.81139 -10.65208 -10.44019 -10.35096 -10.26281 -10.09435 -9.96147 -9.68318 -9.49515 -8.92044 -8.85902 -6.91753 -5.76918 -3.05521 0.89818 1.59592 2.09641 2.38172 2.80359 3.23966 3.42737 3.47624 3.49522 3.70561 3.78059 4.17831 4.22417 4.34334 4.39170 4.55651 4.59400 4.73863 4.76694 4.88604 4.90749 4.99559 5.09127 5.11217 5.16723 5.18530 5.23608 5.30175 5.33276 5.39108 5.46128 5.53245 5.55505 5.55794 5.63817 5.66429 5.72612 5.77591 5.81173 5.96784 6.01942 6.12473 6.29914 6.33457 6.39486 6.42536 6.85298 6.90281 7.04116 7.68827 7.79802 7.90104 8.42344 9.53082 10.12258 10.46333 11.46102 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014734 B = 0.002151 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.878924 B =13014.448167 C =13397.177799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.058 3.942 3 N -0.352 5.352 4 O 0.097 5.903 5 C 0.046 3.954 6 C -0.094 4.094 7 C -0.160 4.160 8 C -0.156 4.156 9 C -0.238 4.238 10 C 0.602 3.398 11 O -0.529 6.529 12 N -0.597 5.597 13 C 0.107 3.893 14 C -0.131 4.131 15 C -0.082 4.082 16 C -0.121 4.121 17 C 0.153 3.847 18 N -0.735 5.735 19 C -0.239 4.239 20 H 0.070 0.930 21 C -0.016 4.016 22 N -0.934 5.934 23 Si 0.907 3.093 24 H -0.290 1.290 25 H -0.291 1.291 26 H -0.282 1.282 27 C -0.129 4.129 28 C 0.112 3.888 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.137 0.863 33 H 0.107 0.893 34 H 0.109 0.891 35 H 0.110 0.890 36 H 0.102 0.898 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.067 0.933 40 H 0.086 0.914 41 H 0.073 0.927 42 H 0.061 0.939 43 H 0.063 0.937 44 H 0.016 0.984 45 H 0.019 0.981 46 H 0.383 0.617 47 H 0.255 0.745 48 H 0.067 0.933 49 H 0.079 0.921 50 H 0.092 0.908 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.047 5.905 -20.565 28.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.104 4.104 3 N -0.059 5.059 4 O 0.036 5.964 5 C -0.017 4.017 6 C -0.113 4.113 7 C -0.197 4.197 8 C -0.193 4.193 9 C -0.245 4.245 10 C 0.388 3.612 11 O -0.405 6.405 12 N -0.330 5.330 13 C -0.015 4.015 14 C -0.169 4.169 15 C -0.101 4.101 16 C -0.159 4.159 17 C 0.025 3.975 18 N -0.379 5.379 19 C -0.370 4.370 20 H 0.087 0.913 21 C -0.211 4.211 22 N -0.583 5.583 23 Si 0.738 3.262 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.208 1.208 27 C -0.167 4.167 28 C -0.010 4.010 29 H 0.105 0.895 30 H 0.103 0.897 31 H 0.104 0.896 32 H 0.155 0.845 33 H 0.125 0.875 34 H 0.128 0.872 35 H 0.128 0.872 36 H 0.120 0.880 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.086 0.914 40 H 0.104 0.896 41 H 0.091 0.909 42 H 0.080 0.920 43 H 0.082 0.918 44 H 0.033 0.967 45 H 0.036 0.964 46 H 0.216 0.784 47 H 0.065 0.935 48 H 0.086 0.914 49 H 0.097 0.903 50 H 0.111 0.889 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 18.830 6.954 -20.956 29.019 hybrid contribution -0.534 -0.616 1.050 1.329 sum 18.296 6.339 -19.906 27.770 Atomic orbital electron populations 1.20259 0.84921 1.04487 1.04009 1.24756 0.98654 0.86274 1.00729 1.73647 0.88947 1.23124 1.20170 1.84513 1.21613 1.22227 1.68077 1.23486 0.95395 0.83590 0.99224 1.20485 0.84125 0.99394 1.07306 1.23128 0.96684 1.00416 0.99507 1.23137 1.00517 1.03918 0.91728 1.21735 0.92556 0.95335 1.14908 1.16899 0.76779 0.83912 0.83648 1.90812 1.50855 1.67908 1.30963 1.48083 1.68030 1.11240 1.05661 1.21928 0.98962 0.97217 0.83402 1.22127 0.96952 0.97307 1.00497 1.21092 0.99252 0.95003 0.94782 1.21758 0.96668 1.01616 0.95813 1.20694 0.90985 0.96999 0.88779 1.42389 1.12243 1.75373 1.07877 1.19231 0.98041 1.33505 0.86230 0.91252 1.24754 0.96189 1.01881 0.98320 1.69659 1.03304 1.49914 1.35412 0.86191 0.77133 0.77830 0.85056 1.21717 1.21750 1.20770 1.21998 0.97305 1.01917 0.95472 1.21724 0.97425 0.79741 1.02095 0.89529 0.89696 0.89599 0.84489 0.87504 0.87235 0.87207 0.87966 0.90832 0.90296 0.91388 0.89596 0.90898 0.92023 0.91835 0.96655 0.96358 0.78354 0.93521 0.91385 0.90294 0.88937 0.91100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.72 10.49 36.01 0.38 -0.34 16 2 C 0.06 0.65 7.56 -79.77 -0.60 0.05 16 3 N -0.35 -4.19 12.01 34.78 0.42 -3.77 16 4 O 0.10 1.04 10.86 18.65 0.20 1.24 16 5 C 0.05 0.45 7.00 -34.63 -0.24 0.21 16 6 C -0.09 -0.66 6.15 -91.77 -0.56 -1.22 16 7 C -0.16 -0.80 10.19 -26.69 -0.27 -1.07 16 8 C -0.16 -0.86 10.24 -26.69 -0.27 -1.14 16 9 C -0.24 -2.67 4.19 -102.89 -0.43 -3.10 16 10 C 0.60 7.28 7.52 -12.53 -0.09 7.19 16 11 O -0.53 -8.06 16.52 5.27 0.09 -7.97 16 12 N -0.60 -6.12 2.97 -173.75 -0.52 -6.64 16 13 C 0.11 0.99 6.37 -3.49 -0.02 0.97 16 14 C -0.13 -1.40 5.16 -26.39 -0.14 -1.54 16 15 C -0.08 -0.93 2.15 -90.58 -0.19 -1.13 16 16 C -0.12 -1.82 4.80 -26.73 -0.13 -1.95 16 17 C 0.15 2.96 6.02 -4.03 -0.02 2.94 16 18 N -0.73 -18.67 5.60 -59.90 -0.34 -19.00 16 19 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 20 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 21 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 22 N -0.93 -28.41 13.06 55.49 0.72 -27.68 16 23 Si 0.91 22.43 29.55 -169.99 -5.02 17.40 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 25 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 26 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 27 C -0.13 -1.29 5.36 -26.59 -0.14 -1.43 16 28 C 0.11 1.07 6.43 -3.69 -0.02 1.05 16 29 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.14 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.11 0.55 8.02 -51.93 -0.42 0.13 16 34 H 0.11 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.08 0.74 6.31 -51.93 -0.33 0.41 16 39 H 0.07 0.77 8.14 -51.92 -0.42 0.34 16 40 H 0.09 0.98 6.50 -51.93 -0.34 0.64 16 41 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 44 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 45 H 0.02 0.36 6.53 -51.93 -0.34 0.02 16 46 H 0.38 10.24 7.67 -40.82 -0.31 9.93 16 47 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 48 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 49 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 50 H 0.09 0.97 7.00 -51.93 -0.36 0.61 16 51 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 415.43 15.07 6.26 6.26 Total: -1.00 -33.84 415.43 -9.61 -43.45 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -8.41 Total: 4.64 kcal Atomic # 6 Polarization: -4.91 SS G_CDS: -3.02 Total: -7.93 kcal Atomic # 7 Polarization: -57.39 SS G_CDS: 0.29 Total: -57.09 kcal Atomic # 8 Polarization: -7.02 SS G_CDS: 0.29 Total: -6.73 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -33.84 -9.61 -43.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753572236.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.225 kcal (2) G-P(sol) polarization free energy of solvation -33.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds