Wall clock time and date at job start Wed Apr 1 2020 04:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30011 * 127.32988 * 2 1 4 4 O 1.20663 * 112.30145 * 179.97438 * 3 2 1 5 5 C 1.33493 * 113.15437 * 0.02562 * 4 3 2 6 6 C 1.50701 * 126.82848 * 179.97438 * 5 4 3 7 7 C 1.52997 * 117.49765 * 8.76421 * 6 5 4 8 8 C 1.53000 * 117.49491 * 300.10270 * 6 5 4 9 9 C 1.37356 * 106.34151 * 359.97438 * 5 4 3 10 10 C 1.47403 * 128.56722 * 179.97438 * 9 5 4 11 11 O 1.21610 * 119.99903 * 270.02149 * 10 9 5 12 12 N 1.34767 * 120.00137 * 90.01431 * 10 9 5 13 13 C 1.46925 * 120.63315 * 359.72725 * 12 10 9 14 14 C 1.53622 * 108.54707 * 126.36741 * 13 12 10 15 15 C 1.53039 * 109.24263 * 54.85432 * 14 13 12 16 16 C 1.53002 * 109.45958 * 178.49278 * 15 14 13 17 17 C 1.53006 * 109.46960 * 295.06984 * 16 15 14 18 18 N 1.46507 * 109.46632 * 180.02562 * 17 16 15 19 19 C 1.36935 * 119.99573 * 180.02562 * 18 17 16 20 20 H 1.08005 * 120.00210 * 359.97438 * 19 18 17 21 21 C 1.38808 * 119.99892 * 180.02562 * 19 18 17 22 22 N 1.31624 * 120.00319 * 359.97438 * 21 19 18 23 23 Si 1.86808 * 119.99960 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46845 * 89.99938 * 23 21 19 25 25 H 1.48504 * 109.46654 * 209.99602 * 23 21 19 26 26 H 1.48496 * 109.47248 * 329.99795 * 23 21 19 27 27 C 1.53040 * 109.53907 * 298.51258 * 15 14 13 28 28 C 1.46925 * 120.63129 * 180.02562 * 12 10 9 29 29 H 1.08996 * 109.46955 * 90.02599 * 1 2 3 30 30 H 1.09004 * 109.46954 * 210.02330 * 1 2 3 31 31 H 1.09001 * 109.47301 * 330.02242 * 1 2 3 32 32 H 1.09000 * 115.54719 * 154.44135 * 6 5 4 33 33 H 1.08991 * 117.50227 * 0.02562 * 7 6 5 34 34 H 1.08999 * 117.49408 * 145.02688 * 7 6 5 35 35 H 1.08999 * 117.50014 * 214.97938 * 8 6 5 36 36 H 1.09004 * 117.50212 * 359.97438 * 8 6 5 37 37 H 1.09003 * 109.58840 * 246.20193 * 13 12 10 38 38 H 1.09004 * 109.58739 * 6.61899 * 13 12 10 39 39 H 1.09007 * 109.63039 * 294.86651 * 14 13 12 40 40 H 1.08999 * 109.43369 * 174.72947 * 14 13 12 41 41 H 1.09001 * 109.44487 * 58.53199 * 15 14 13 42 42 H 1.08996 * 109.46953 * 55.07199 * 16 15 14 43 43 H 1.08999 * 109.47186 * 175.06770 * 16 15 14 44 44 H 1.08992 * 109.47014 * 300.00100 * 17 16 15 45 45 H 1.09000 * 109.46763 * 60.00373 * 17 16 15 46 46 H 0.96993 * 119.99984 * 359.97438 * 18 17 16 47 47 H 0.96991 * 120.00379 * 180.02562 * 22 21 19 48 48 H 1.08997 * 109.49506 * 301.41508 * 27 15 14 49 49 H 1.08995 * 109.49336 * 181.31518 * 27 15 14 50 50 H 1.09001 * 109.58737 * 353.37717 * 28 12 10 51 51 H 1.09005 * 109.58654 * 113.66190 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2954 1.0338 0.0000 4 8 3.4608 0.7209 0.0005 5 6 3.6495 -0.6006 0.0004 6 6 4.9713 -1.3244 0.0003 7 6 6.2351 -0.4872 0.2072 8 6 5.9178 -1.0664 -1.1737 9 6 2.3993 -1.1695 0.0003 10 6 2.0402 -2.5991 -0.0004 11 8 1.8923 -3.1884 -1.0538 12 7 1.8759 -3.2532 1.1664 13 6 2.0572 -2.5565 2.4472 14 6 0.7958 -2.7640 3.2991 15 6 0.5188 -4.2631 3.4333 16 6 -0.7152 -4.4768 4.3123 17 6 -0.4204 -3.9893 5.7323 18 7 -1.6019 -4.1945 6.5741 19 6 -1.5737 -3.8304 7.8938 20 1 -0.6805 -3.3924 8.3143 21 6 -2.6929 -4.0253 8.6916 22 7 -3.7813 -4.5596 8.1793 23 14 -2.6543 -3.5292 10.4922 24 1 -3.1095 -2.1222 10.6278 25 1 -3.5547 -4.4180 11.2697 26 1 -1.2681 -3.6532 11.0102 27 6 0.2681 -4.8633 2.0480 28 6 1.5186 -4.6783 1.1819 29 1 -0.3633 -0.0005 -1.0276 30 1 -0.3633 -0.8898 0.5142 31 1 -0.3634 0.8902 0.5135 32 1 4.9575 -2.3284 0.4245 33 1 6.1105 0.5869 0.3438 34 1 7.0530 -0.9406 0.7672 35 1 6.5272 -1.9006 -1.5216 36 1 5.5843 -0.3736 -1.9464 37 1 2.9236 -2.9659 2.9666 38 1 2.2066 -1.4920 2.2662 39 1 -0.0541 -2.2785 2.8194 40 1 0.9511 -2.3327 4.2881 41 1 1.3793 -4.7517 3.8905 42 1 -1.5548 -3.9156 3.9024 43 1 -0.9646 -5.5376 4.3367 44 1 0.4192 -4.5505 6.1422 45 1 -0.1711 -2.9285 5.7078 46 1 -2.4041 -4.5875 6.1964 47 1 -4.5634 -4.6954 8.7366 48 1 -0.5768 -4.3580 1.5801 49 1 0.0479 -5.9262 2.1465 50 1 1.3124 -5.0144 0.1657 51 1 2.3430 -5.2572 1.5981 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753572236.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:07 Heat of formation + Delta-G solvation = 30.738628 kcal Electronic energy + Delta-G solvation = -30869.533014 eV Core-core repulsion = 26772.019161 eV Total energy + Delta-G solvation = -4097.513853 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -46.03192 -41.28175 -39.04648 -38.35548 -36.89411 -35.76397 -35.02795 -33.25935 -32.70786 -31.97072 -30.04322 -29.76387 -27.07370 -25.77332 -24.66201 -24.37061 -24.24512 -23.33052 -22.51684 -21.55313 -20.76826 -20.18653 -19.17016 -18.99576 -18.59655 -17.75414 -17.25520 -16.86092 -16.67090 -16.14952 -15.77615 -15.50346 -15.43539 -15.32769 -14.92181 -14.74463 -14.56804 -14.40146 -14.32801 -14.18259 -14.04248 -13.83901 -13.26429 -13.10010 -13.04509 -12.84625 -12.57523 -12.50561 -12.44847 -12.32021 -12.24192 -12.17300 -12.09392 -11.97834 -11.64131 -11.47168 -11.45018 -11.29271 -11.20306 -10.95409 -10.88025 -10.22598 -9.78789 -8.98608 -7.95362 -5.24164 0.14225 0.75752 1.18881 1.47130 1.49015 1.57460 1.61627 2.01004 2.56085 2.76130 2.95432 3.09514 3.38350 3.43761 3.58807 3.68619 3.74794 3.78565 3.88696 3.93971 4.06820 4.12778 4.20132 4.31287 4.37904 4.38945 4.44461 4.47923 4.49226 4.58345 4.62499 4.63261 4.74472 4.74594 4.82654 4.88931 4.90260 4.94764 4.99791 5.04018 5.05432 5.08409 5.18990 5.19646 5.30557 5.38048 5.49078 5.52195 5.57465 6.17537 6.27654 6.90245 7.09871 7.33144 8.11280 8.32776 9.28440 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014734 B = 0.002151 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.878924 B =13014.448167 C =13397.177799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.051 3.949 3 N -0.373 5.373 4 O 0.094 5.906 5 C 0.060 3.940 6 C -0.114 4.114 7 C -0.144 4.144 8 C -0.154 4.154 9 C -0.262 4.262 10 C 0.606 3.394 11 O -0.566 6.566 12 N -0.591 5.591 13 C 0.114 3.886 14 C -0.128 4.128 15 C -0.072 4.072 16 C -0.108 4.108 17 C 0.151 3.849 18 N -0.751 5.751 19 C -0.244 4.244 20 H 0.076 0.924 21 C -0.079 4.079 22 N -0.971 5.971 23 Si 0.974 3.026 24 H -0.287 1.287 25 H -0.295 1.295 26 H -0.268 1.268 27 C -0.122 4.122 28 C 0.113 3.887 29 H 0.093 0.907 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.145 0.855 33 H 0.104 0.896 34 H 0.131 0.869 35 H 0.126 0.874 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.078 0.922 39 H 0.058 0.942 40 H 0.080 0.920 41 H 0.086 0.914 42 H 0.051 0.949 43 H 0.059 0.941 44 H 0.020 0.980 45 H 0.024 0.976 46 H 0.372 0.628 47 H 0.251 0.749 48 H 0.056 0.944 49 H 0.090 0.910 50 H 0.084 0.916 51 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.399 5.942 -20.242 30.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.111 4.111 3 N -0.081 5.081 4 O 0.034 5.966 5 C -0.003 4.003 6 C -0.133 4.133 7 C -0.181 4.181 8 C -0.191 4.191 9 C -0.269 4.269 10 C 0.393 3.607 11 O -0.446 6.446 12 N -0.322 5.322 13 C -0.008 4.008 14 C -0.166 4.166 15 C -0.091 4.091 16 C -0.146 4.146 17 C 0.025 3.975 18 N -0.393 5.393 19 C -0.376 4.376 20 H 0.094 0.906 21 C -0.271 4.271 22 N -0.622 5.622 23 Si 0.803 3.197 24 H -0.214 1.214 25 H -0.222 1.222 26 H -0.192 1.192 27 C -0.160 4.160 28 C -0.008 4.008 29 H 0.112 0.888 30 H 0.102 0.898 31 H 0.112 0.888 32 H 0.163 0.837 33 H 0.123 0.877 34 H 0.149 0.851 35 H 0.145 0.855 36 H 0.113 0.887 37 H 0.114 0.886 38 H 0.097 0.903 39 H 0.077 0.923 40 H 0.099 0.901 41 H 0.104 0.896 42 H 0.070 0.930 43 H 0.078 0.922 44 H 0.038 0.962 45 H 0.042 0.958 46 H 0.203 0.797 47 H 0.060 0.940 48 H 0.075 0.925 49 H 0.108 0.892 50 H 0.102 0.898 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 21.237 7.008 -20.626 30.423 hybrid contribution -1.204 -0.617 0.910 1.631 sum 20.033 6.391 -19.716 28.825 Atomic orbital electron populations 1.20328 0.83930 1.04845 1.04572 1.25088 0.99479 0.86271 1.00244 1.73631 0.89407 1.23677 1.21358 1.84483 1.21247 1.22764 1.68111 1.23976 0.96200 0.83094 0.97030 1.20694 0.83529 0.99880 1.09232 1.23236 0.95695 1.00158 0.99006 1.23245 0.99780 1.04380 0.91656 1.21725 0.93272 0.94964 1.16939 1.16959 0.76205 0.84063 0.83481 1.90788 1.52786 1.68747 1.32265 1.48133 1.67029 1.11522 1.05552 1.21938 0.98821 0.97410 0.82623 1.22070 0.97455 0.96678 1.00414 1.21005 0.97685 0.95681 0.94744 1.21628 0.98199 1.00879 0.93918 1.20897 0.88967 0.97431 0.90215 1.42670 1.13592 1.75211 1.07862 1.19657 0.98074 1.32349 0.87540 0.90573 1.25608 0.96069 1.02757 1.02701 1.69818 1.03896 1.51719 1.36793 0.85132 0.77547 0.77158 0.79896 1.21403 1.22198 1.19249 1.21920 0.97243 1.02356 0.94462 1.21780 0.97865 0.79508 1.01642 0.88839 0.89754 0.88759 0.83749 0.87726 0.85103 0.85544 0.88678 0.88646 0.90324 0.92322 0.90114 0.89586 0.93039 0.92247 0.96238 0.95773 0.79652 0.94024 0.92488 0.89196 0.89784 0.88847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.44 10.49 71.24 0.75 -0.69 16 2 C 0.05 1.15 7.56 45.16 0.34 1.49 16 3 N -0.37 -8.81 12.01 -44.78 -0.54 -9.35 16 4 O 0.09 1.97 10.86 76.98 0.84 2.80 16 5 C 0.06 1.13 7.00 25.48 0.18 1.31 16 6 C -0.11 -1.40 6.15 -11.54 -0.07 -1.48 16 7 C -0.14 -1.09 10.19 30.62 0.31 -0.78 16 8 C -0.15 -1.41 10.24 30.62 0.31 -1.10 16 9 C -0.26 -5.75 4.19 -18.75 -0.08 -5.83 16 10 C 0.61 14.29 7.52 86.66 0.65 14.94 16 11 O -0.57 -17.22 16.52 -4.06 -0.07 -17.28 16 12 N -0.59 -11.21 2.97 -821.88 -2.44 -13.65 16 13 C 0.11 1.88 6.37 86.51 0.55 2.43 16 14 C -0.13 -2.55 5.16 30.82 0.16 -2.39 16 15 C -0.07 -1.50 2.15 -10.77 -0.02 -1.52 16 16 C -0.11 -3.18 4.80 30.60 0.15 -3.03 16 17 C 0.15 5.71 6.02 86.38 0.52 6.23 16 18 N -0.75 -38.19 5.60 -343.44 -1.92 -40.12 16 19 C -0.24 -13.67 9.99 84.03 0.84 -12.83 16 20 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 21 C -0.08 -4.58 5.50 84.86 0.47 -4.12 16 22 N -0.97 -59.84 13.06 21.65 0.28 -59.56 16 23 Si 0.97 46.02 29.55 68.60 2.03 48.05 16 24 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 25 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 26 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 27 C -0.12 -2.23 5.36 30.69 0.16 -2.07 16 28 C 0.11 1.96 6.43 86.38 0.56 2.51 16 29 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 31 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.14 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.10 0.87 8.02 -2.39 -0.02 0.85 16 34 H 0.13 0.46 8.14 -2.39 -0.02 0.44 16 35 H 0.13 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.08 1.35 6.31 -2.38 -0.02 1.34 16 39 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 40 H 0.08 1.71 6.50 -2.39 -0.02 1.70 16 41 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 44 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 45 H 0.02 0.91 6.53 -2.39 -0.02 0.89 16 46 H 0.37 20.23 7.67 -92.71 -0.71 19.51 16 47 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 48 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 49 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 50 H 0.08 1.67 7.00 -2.39 -0.02 1.65 16 51 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 Total: -1.00 -72.96 415.43 4.18 -68.78 By element: Atomic # 1 Polarization: 27.01 SS G_CDS: 0.22 Total: 27.24 kcal Atomic # 6 Polarization: -12.69 SS G_CDS: 5.77 Total: -6.91 kcal Atomic # 7 Polarization: -118.06 SS G_CDS: -4.62 Total: -122.68 kcal Atomic # 8 Polarization: -15.25 SS G_CDS: 0.77 Total: -14.48 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.05 kcal Total: -72.96 4.18 -68.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753572236.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.517 kcal (2) G-P(sol) polarization free energy of solvation -72.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds