Wall clock time and date at job start Wed Apr 1 2020 05:16:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 110.91941 * 2 1 4 4 C 1.55136 * 111.18964 * 236.09366 * 2 1 3 5 5 N 1.47426 * 104.72023 * 279.19165 * 4 2 1 6 6 C 1.34777 * 125.64821 * 155.81817 * 5 4 2 7 7 O 1.21288 * 119.99593 * 359.71695 * 6 5 4 8 8 C 1.50697 * 120.00369 * 179.71537 * 6 5 4 9 9 C 1.53001 * 109.47291 * 179.97438 * 8 6 5 10 10 C 1.53000 * 109.46886 * 179.97438 * 9 8 6 11 11 O 1.42903 * 109.46726 * 180.02562 * 10 9 8 12 12 C 1.35913 * 116.99828 * 180.02562 * 11 10 9 13 13 C 1.39136 * 120.47760 * 180.02562 * 12 11 10 14 14 C 1.38528 * 118.37934 * 180.02562 * 13 12 11 15 15 C 1.38260 * 119.22361 * 0.02562 * 14 13 12 16 16 N 1.31848 * 120.88016 * 359.97438 * 15 14 13 17 17 C 1.31849 * 121.78260 * 359.70815 * 16 15 14 18 18 C 1.47017 * 108.70266 * 335.55601 * 5 4 2 19 19 C 1.54323 * 107.27546 * 1.28318 * 18 5 4 20 20 H 1.08992 * 110.72230 * 263.83594 * 19 18 5 21 21 N 1.46496 * 110.71870 * 140.73329 * 19 18 5 22 22 C 1.36941 * 119.99946 * 86.46023 * 21 19 18 23 23 H 1.07999 * 119.99881 * 359.97438 * 22 21 19 24 24 C 1.38807 * 119.99870 * 179.97438 * 22 21 19 25 25 N 1.31619 * 120.00406 * 359.97438 * 24 22 21 26 26 Si 1.86806 * 119.99927 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.46983 * 59.99759 * 26 24 22 28 28 H 1.48500 * 109.47265 * 179.97438 * 26 24 22 29 29 H 1.48498 * 109.46961 * 300.00249 * 26 24 22 30 30 H 1.09001 * 109.47001 * 296.09938 * 1 2 3 31 31 H 1.09001 * 109.46661 * 56.09381 * 1 2 3 32 32 H 1.08997 * 109.47422 * 176.09307 * 1 2 3 33 33 H 1.08991 * 109.47329 * 183.90123 * 3 2 1 34 34 H 1.09001 * 109.47457 * 303.90647 * 3 2 1 35 35 H 1.09004 * 109.46896 * 63.90373 * 3 2 1 36 36 H 1.08995 * 110.49508 * 160.35004 * 4 2 1 37 37 H 1.09002 * 110.34137 * 37.95208 * 4 2 1 38 38 H 1.09001 * 109.46613 * 59.99889 * 8 6 5 39 39 H 1.09002 * 109.47120 * 300.00240 * 8 6 5 40 40 H 1.09001 * 109.46652 * 60.00253 * 9 8 6 41 41 H 1.08992 * 109.47514 * 300.00342 * 9 8 6 42 42 H 1.09002 * 109.47398 * 300.00496 * 10 9 8 43 43 H 1.09001 * 109.47194 * 60.00677 * 10 9 8 44 44 H 1.08002 * 120.80660 * 359.97438 * 13 12 11 45 45 H 1.08001 * 120.38895 * 180.02562 * 14 13 12 46 46 H 1.07998 * 119.56097 * 179.97438 * 15 14 13 47 47 H 1.07999 * 119.65229 * 180.28870 * 17 16 15 48 48 H 1.09005 * 109.88494 * 120.70631 * 18 5 4 49 49 H 1.09002 * 109.88007 * 241.86752 * 18 5 4 50 50 H 0.96998 * 120.00442 * 266.45580 * 21 19 18 51 51 H 0.96998 * 120.00346 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0763 1.4291 0.0000 4 6 2.0908 -0.8069 -1.2005 5 7 2.0138 -2.2159 -0.7735 6 6 1.9470 -3.2828 -1.5943 7 8 1.9418 -3.1235 -2.7966 8 6 1.8786 -4.6736 -1.0181 9 6 1.8100 -5.6942 -2.1559 10 6 1.7413 -7.1063 -1.5709 11 8 1.6778 -8.0595 -2.6336 12 6 1.6112 -9.3710 -2.2830 13 6 1.5473 -10.3601 -3.2594 14 6 1.4801 -11.6828 -2.8532 15 6 1.4783 -11.9747 -1.5018 16 7 1.5398 -11.0132 -0.6017 17 6 1.6111 -9.7426 -0.9467 18 6 2.0284 -2.2647 0.6958 19 6 2.0862 -0.8080 1.2021 20 1 3.1133 -0.5162 1.4208 21 7 1.2376 -0.6361 2.3839 22 6 1.7369 -0.9051 3.6303 23 1 2.7561 -1.2444 3.7421 24 6 0.9330 -0.7417 4.7501 25 7 -0.3089 -0.3277 4.6140 26 14 1.6139 -1.1094 6.4503 27 1 2.7820 -0.2320 6.7161 28 1 0.5637 -0.8568 7.4694 29 1 2.0374 -2.5311 6.5171 30 1 -0.3633 0.4521 0.9229 31 1 -0.3633 0.5733 -0.8529 32 1 -0.3634 -1.0252 -0.0700 33 1 3.1636 1.4025 -0.0699 34 1 1.6706 1.9732 -0.8529 35 1 1.7838 1.9299 0.9229 36 1 3.1252 -0.5266 -1.3989 37 1 1.4763 -0.6448 -2.0861 38 1 0.9895 -4.7651 -0.3943 39 1 2.7668 -4.8609 -0.4146 40 1 2.6990 -5.6028 -2.7801 41 1 0.9218 -5.5068 -2.7591 42 1 2.6299 -7.2935 -0.9679 43 1 0.8526 -7.1981 -0.9465 44 1 1.5492 -10.1029 -4.3083 45 1 1.4298 -12.4768 -3.5837 46 1 1.4256 -13.0040 -1.1791 47 1 1.6648 -8.9832 -0.1806 48 1 1.1217 -2.7480 1.0597 49 1 2.9062 -2.8118 1.0398 50 1 0.3221 -0.3317 2.2835 51 1 -0.8705 -0.2132 5.3965 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755766767.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:16:00 Heat of formation + Delta-G solvation = -30.672961 kcal Electronic energy + Delta-G solvation = -29944.084070 eV Core-core repulsion = 25843.907210 eV Total energy + Delta-G solvation = -4100.176859 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.91773 -40.11375 -38.61504 -38.02537 -34.19674 -34.10734 -33.15841 -32.58711 -30.87550 -30.57458 -28.20586 -27.52986 -27.03824 -25.87403 -24.15882 -23.94411 -23.29852 -21.90125 -21.31400 -19.19105 -18.75520 -18.30899 -17.31473 -17.20848 -16.92819 -16.79217 -16.51417 -15.97473 -15.28012 -14.96444 -14.78746 -14.43846 -14.12954 -14.08281 -13.87668 -13.70466 -13.37318 -13.17555 -13.02959 -12.73931 -12.62578 -12.48513 -12.34447 -12.17571 -12.06586 -11.77291 -11.57896 -11.54375 -11.28192 -11.08966 -10.94847 -10.93602 -10.60533 -10.53454 -10.29865 -10.07857 -9.95375 -9.78681 -9.76135 -9.66132 -9.04267 -8.80125 -8.36444 -7.14275 -5.90239 -3.20901 0.75230 0.93764 2.63397 2.77088 3.26291 3.35998 3.41498 3.42139 3.45349 4.14667 4.30005 4.42112 4.48483 4.54131 4.61019 4.65757 4.78417 4.79356 4.94942 5.03099 5.08863 5.10595 5.17007 5.18866 5.21228 5.43588 5.46843 5.54917 5.60995 5.66155 5.72142 5.75139 5.80361 5.83827 5.93498 5.99303 6.00371 6.08549 6.17221 6.19129 6.28237 6.33038 6.37586 6.56090 6.59362 6.70313 6.84637 6.89985 7.57790 7.60771 7.76055 8.27522 8.31523 9.40118 9.94115 10.29035 11.31643 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009885 B = 0.002184 C = 0.001839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2831.885385 B =12819.707257 C =15220.384187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.086 4.086 3 C -0.129 4.129 4 C 0.117 3.883 5 N -0.610 5.610 6 C 0.527 3.473 7 O -0.555 6.555 8 C -0.134 4.134 9 C -0.100 4.100 10 C 0.055 3.945 11 O -0.307 6.307 12 C 0.084 3.916 13 C -0.112 4.112 14 C -0.133 4.133 15 C 0.055 3.945 16 N -0.450 5.450 17 C 0.016 3.984 18 C 0.072 3.928 19 C 0.180 3.820 20 H 0.065 0.935 21 N -0.711 5.711 22 C -0.250 4.250 23 H 0.071 0.929 24 C -0.007 4.007 25 N -0.930 5.930 26 Si 0.907 3.093 27 H -0.285 1.285 28 H -0.291 1.291 29 H -0.285 1.285 30 H 0.072 0.928 31 H 0.048 0.952 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.050 0.950 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.098 0.902 39 H 0.096 0.904 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.067 0.933 43 H 0.068 0.932 44 H 0.142 0.858 45 H 0.141 0.859 46 H 0.157 0.843 47 H 0.160 0.840 48 H 0.074 0.926 49 H 0.059 0.941 50 H 0.390 0.610 51 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.037 -14.207 -14.751 20.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.087 4.087 3 C -0.187 4.187 4 C -0.005 4.005 5 N -0.343 5.343 6 C 0.316 3.684 7 O -0.434 6.434 8 C -0.174 4.174 9 C -0.138 4.138 10 C -0.020 4.020 11 O -0.219 6.219 12 C 0.036 3.964 13 C -0.139 4.139 14 C -0.152 4.152 15 C -0.103 4.103 16 N -0.159 5.159 17 C -0.142 4.142 18 C -0.054 4.054 19 C 0.068 3.932 20 H 0.083 0.917 21 N -0.354 5.354 22 C -0.380 4.380 23 H 0.089 0.911 24 C -0.204 4.204 25 N -0.577 5.577 26 Si 0.738 3.262 27 H -0.212 1.212 28 H -0.217 1.217 29 H -0.212 1.212 30 H 0.091 0.909 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.116 0.884 39 H 0.114 0.886 40 H 0.100 0.900 41 H 0.101 0.899 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.160 0.840 45 H 0.159 0.841 46 H 0.175 0.825 47 H 0.177 0.823 48 H 0.093 0.907 49 H 0.077 0.923 50 H 0.227 0.773 51 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 4.088 -14.304 -14.535 20.799 hybrid contribution 0.052 0.009 0.445 0.448 sum 4.140 -14.295 -14.090 20.494 Atomic orbital electron populations 1.21639 0.93548 1.01774 1.01947 1.22017 0.96498 0.95380 0.94850 1.21647 1.00215 0.94643 1.02187 1.22345 1.00455 0.80152 0.97593 1.48521 1.71620 1.06071 1.08136 1.20103 0.76312 0.85855 0.86116 1.90682 1.51539 1.86479 1.14698 1.21482 1.05088 0.91751 0.99093 1.21210 1.05260 0.89475 0.97893 1.22973 1.01953 0.88002 0.89062 1.86086 1.87769 1.12277 1.35737 1.20104 0.97024 0.84849 0.94401 1.20981 1.01945 0.91134 0.99798 1.22030 0.99298 0.96196 0.97716 1.22687 0.99447 0.98884 0.89253 1.67546 1.09339 1.00264 1.38746 1.23013 1.03105 0.94410 0.93667 1.23358 1.01560 1.03057 0.77411 1.21202 0.95467 0.89659 0.86910 0.91675 1.42523 1.13162 1.79336 1.00330 1.19194 0.96750 1.38420 0.83675 0.91097 1.24751 0.95977 1.01702 0.97961 1.69638 1.06658 1.52078 1.29304 0.86275 0.77726 0.78094 0.84092 1.21181 1.21673 1.21162 0.90887 0.93307 0.92791 0.92822 0.93088 0.91319 0.91715 0.90899 0.88385 0.88566 0.89987 0.89921 0.91429 0.91340 0.83975 0.84090 0.82546 0.82319 0.90749 0.92274 0.77307 0.93259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.06 7.95 37.16 0.30 -1.76 16 2 C -0.09 -1.30 0.87 -152.24 -0.13 -1.43 16 3 C -0.13 -1.77 8.68 37.16 0.32 -1.45 16 4 C 0.12 1.70 5.85 -2.41 -0.01 1.68 16 5 N -0.61 -9.11 3.31 -170.38 -0.56 -9.67 16 6 C 0.53 7.81 7.85 -10.99 -0.09 7.73 16 7 O -0.55 -9.84 16.24 5.55 0.09 -9.75 16 8 C -0.13 -1.47 4.89 -27.88 -0.14 -1.61 16 9 C -0.10 -1.05 4.87 -26.73 -0.13 -1.18 16 10 C 0.06 0.49 4.75 37.16 0.18 0.67 16 11 O -0.31 -3.25 10.15 -19.47 -0.20 -3.45 16 12 C 0.08 0.85 6.71 -39.08 -0.26 0.59 16 13 C -0.11 -0.95 10.13 -39.14 -0.40 -1.35 16 14 C -0.13 -0.93 10.11 -39.47 -0.40 -1.33 16 15 C 0.05 0.46 11.18 -17.54 -0.20 0.26 16 16 N -0.45 -4.91 10.36 -13.12 -0.14 -5.05 16 17 C 0.02 0.17 10.22 -17.37 -0.18 -0.01 16 18 C 0.07 1.14 5.92 -3.07 -0.02 1.12 16 19 C 0.18 3.17 2.84 -66.10 -0.19 2.98 16 20 H 0.07 1.17 8.02 -51.93 -0.42 0.75 16 21 N -0.71 -15.84 5.08 -51.66 -0.26 -16.10 16 22 C -0.25 -6.29 9.98 -15.06 -0.15 -6.44 16 23 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 24 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 25 N -0.93 -26.27 13.06 55.49 0.72 -25.55 16 26 Si 0.91 21.11 29.55 -169.99 -5.02 16.08 16 27 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 28 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 29 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 30 H 0.07 1.29 6.36 -51.93 -0.33 0.96 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.05 0.88 7.91 -51.93 -0.41 0.47 16 33 H 0.05 0.67 8.07 -51.93 -0.42 0.25 16 34 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.06 0.88 7.99 -51.93 -0.41 0.46 16 37 H 0.07 1.08 7.95 -51.93 -0.41 0.66 16 38 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 39 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.08 0.93 8.10 -51.93 -0.42 0.51 16 41 H 0.08 0.96 8.10 -51.93 -0.42 0.54 16 42 H 0.07 0.52 7.67 -51.93 -0.40 0.12 16 43 H 0.07 0.54 7.69 -51.93 -0.40 0.14 16 44 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 45 H 0.14 0.55 8.06 -52.49 -0.42 0.13 16 46 H 0.16 0.87 8.06 -52.49 -0.42 0.45 16 47 H 0.16 1.38 6.32 -52.49 -0.33 1.05 16 48 H 0.07 1.27 8.03 -51.93 -0.42 0.86 16 49 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 50 H 0.39 9.25 5.28 -40.82 -0.22 9.04 16 51 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 414.00 15.07 6.24 6.24 Total: -1.00 -31.16 414.00 -9.08 -40.24 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: -8.36 Total: 8.83 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: -1.59 Total: -1.81 kcal Atomic # 7 Polarization: -56.13 SS G_CDS: -0.24 Total: -56.37 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: -0.11 Total: -13.20 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -31.16 -9.08 -40.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755766767.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.562 kcal (2) G-P(sol) polarization free energy of solvation -31.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds