Wall clock time and date at job start Wed Apr 1 2020 05:16:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 110.91691 * 2 1 4 4 C 1.54914 * 111.00263 * 123.89858 * 2 1 3 5 5 N 1.47426 * 104.82992 * 81.06932 * 4 2 1 6 6 C 1.34775 * 125.64489 * 204.09098 * 5 4 2 7 7 O 1.21286 * 120.00271 * 0.02562 * 6 5 4 8 8 C 1.50705 * 119.99749 * 180.02562 * 6 5 4 9 9 C 1.53007 * 109.47017 * 180.02562 * 8 6 5 10 10 C 1.52998 * 109.47054 * 180.02562 * 9 8 6 11 11 O 1.42894 * 109.47170 * 180.02562 * 10 9 8 12 12 C 1.35909 * 117.00210 * 179.97438 * 11 10 9 13 13 C 1.39143 * 120.47448 * 179.97438 * 12 11 10 14 14 C 1.38537 * 118.37269 * 180.02562 * 13 12 11 15 15 C 1.38255 * 119.22094 * 0.02562 * 14 13 12 16 16 N 1.31848 * 120.88734 * 0.02562 * 15 14 13 17 17 C 1.31840 * 121.78153 * 359.69692 * 16 15 14 18 18 C 1.47018 * 108.70517 * 24.12623 * 5 4 2 19 19 C 1.54325 * 107.40412 * 358.86539 * 18 5 4 20 20 H 1.09000 * 110.72188 * 96.24097 * 19 18 5 21 21 N 1.46495 * 110.72250 * 219.52320 * 19 18 5 22 22 C 1.36934 * 119.99717 * 273.54393 * 21 19 18 23 23 H 1.08002 * 120.00471 * 359.97438 * 22 21 19 24 24 C 1.38816 * 119.99836 * 180.02562 * 22 21 19 25 25 N 1.31613 * 120.00160 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 119.99860 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.47015 * 359.97438 * 26 24 22 28 28 H 1.48497 * 109.47480 * 119.99732 * 26 24 22 29 29 H 1.48507 * 109.46999 * 239.99513 * 26 24 22 30 30 H 1.08998 * 109.47124 * 297.54972 * 1 2 3 31 31 H 1.09000 * 109.46711 * 57.55324 * 1 2 3 32 32 H 1.08996 * 109.47179 * 177.55223 * 1 2 3 33 33 H 1.08997 * 109.47294 * 182.44461 * 3 2 1 34 34 H 1.08997 * 109.47279 * 302.45141 * 3 2 1 35 35 H 1.09006 * 109.47100 * 62.44935 * 3 2 1 36 36 H 1.08999 * 110.37121 * 322.22667 * 4 2 1 37 37 H 1.09001 * 110.45739 * 199.95279 * 4 2 1 38 38 H 1.08998 * 109.47418 * 300.00009 * 8 6 5 39 39 H 1.08995 * 109.46873 * 60.00330 * 8 6 5 40 40 H 1.08998 * 109.46906 * 300.00165 * 9 8 6 41 41 H 1.09004 * 109.46954 * 60.00316 * 9 8 6 42 42 H 1.09002 * 109.47090 * 300.00262 * 10 9 8 43 43 H 1.08995 * 109.46969 * 60.00092 * 10 9 8 44 44 H 1.08001 * 120.81303 * 359.97438 * 13 12 11 45 45 H 1.08002 * 120.38804 * 180.02562 * 14 13 12 46 46 H 1.08003 * 119.55370 * 179.97438 * 15 14 13 47 47 H 1.07999 * 119.65829 * 180.29081 * 17 16 15 48 48 H 1.09002 * 109.88241 * 118.36067 * 18 5 4 49 49 H 1.09000 * 109.88049 * 239.37196 * 18 5 4 50 50 H 0.96997 * 120.00433 * 93.54551 * 21 19 18 51 51 H 0.97005 * 120.00291 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0762 1.4292 0.0000 4 6 2.0852 -0.8066 1.2004 5 7 2.0139 -2.2159 0.7734 6 6 1.9471 -3.2828 1.5942 7 8 1.9418 -3.1237 2.7965 8 6 1.8791 -4.6736 1.0178 9 6 1.8105 -5.6943 2.1556 10 6 1.7421 -7.1064 1.5706 11 8 1.6774 -8.0596 2.6331 12 6 1.6108 -9.3710 2.2825 13 6 1.5458 -10.3602 3.2589 14 6 1.4799 -11.6830 2.8526 15 6 1.4813 -11.9748 1.5012 16 7 1.5449 -11.0134 0.6012 17 6 1.6035 -9.7422 0.9460 18 6 2.0286 -2.2646 -0.6959 19 6 2.0842 -0.8090 -1.2055 20 1 3.1108 -0.5167 -1.4263 21 7 1.2306 -0.6394 -2.3840 22 6 1.7245 -0.9111 -3.6319 23 1 2.7435 -1.2500 -3.7475 24 6 0.9158 -0.7499 -4.7486 25 7 -0.3257 -0.3364 -4.6079 26 14 1.5894 -1.1212 -6.4509 27 1 3.0013 -1.5674 -6.3382 28 1 0.7793 -2.1948 -7.0805 29 1 1.5232 0.1040 -7.2875 30 1 -0.3633 0.4753 0.9111 31 1 -0.3633 0.5514 -0.8673 32 1 -0.3633 -1.0267 -0.0439 33 1 3.1650 1.4020 -0.0438 34 1 1.6909 1.9654 -0.8672 35 1 1.7619 1.9383 0.9112 36 1 1.4672 -0.6461 2.0838 37 1 3.1180 -0.5238 1.4044 38 1 0.9901 -4.7654 0.3939 39 1 2.7673 -4.8607 0.4145 40 1 2.6993 -5.6028 2.7799 41 1 0.9220 -5.5071 2.7587 42 1 0.8535 -7.1982 0.9460 43 1 2.6307 -7.2934 0.9678 44 1 1.5476 -10.1030 4.3079 45 1 1.4279 -12.4769 3.5830 46 1 1.4305 -13.0043 1.1785 47 1 1.6499 -8.9823 0.1800 48 1 2.9064 -2.8117 -1.0399 49 1 1.1232 -2.7504 -1.0597 50 1 0.3156 -0.3347 -2.2803 51 1 -0.8909 -0.2241 -5.3882 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755766768.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:16:03 Heat of formation + Delta-G solvation = -31.983745 kcal Electronic energy + Delta-G solvation = -29943.830519 eV Core-core repulsion = 25843.596820 eV Total energy + Delta-G solvation = -4100.233699 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.91848 -40.11237 -38.61556 -38.02347 -34.19515 -34.10733 -33.16626 -32.58749 -30.88131 -30.57480 -28.20342 -27.53576 -27.03684 -25.87766 -24.15976 -23.94641 -23.29884 -21.89981 -21.31456 -19.19473 -18.76338 -18.31458 -17.30870 -17.20810 -16.92858 -16.79391 -16.51511 -15.97067 -15.28298 -14.96267 -14.78739 -14.43961 -14.12209 -14.08094 -13.87823 -13.70711 -13.37302 -13.18148 -13.02641 -12.74245 -12.62131 -12.49096 -12.34973 -12.17495 -12.07072 -11.77918 -11.59560 -11.54149 -11.27239 -11.09947 -10.96552 -10.94827 -10.62075 -10.53378 -10.24943 -10.07864 -9.94270 -9.78766 -9.77662 -9.66755 -9.05474 -8.80133 -8.36431 -7.14278 -5.90798 -3.21274 0.75219 0.93723 2.63327 2.76995 3.26069 3.35029 3.41538 3.43404 3.45330 4.14634 4.29949 4.41879 4.48220 4.54004 4.60970 4.65671 4.78075 4.79235 4.94887 5.02725 5.08763 5.10459 5.16877 5.18759 5.21162 5.43402 5.46637 5.54760 5.60961 5.66584 5.72121 5.74383 5.80198 5.83815 5.94336 5.97618 6.00245 6.09644 6.17209 6.19586 6.28069 6.32859 6.36747 6.55709 6.59589 6.68426 6.83858 6.89991 7.58499 7.60762 7.75889 8.26870 8.31334 9.39751 9.93813 10.28847 11.31216 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009871 B = 0.002186 C = 0.001840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2835.856529 B =12808.138091 C =15213.033975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.087 4.087 3 C -0.128 4.128 4 C 0.118 3.882 5 N -0.610 5.610 6 C 0.528 3.472 7 O -0.555 6.555 8 C -0.134 4.134 9 C -0.101 4.101 10 C 0.055 3.945 11 O -0.307 6.307 12 C 0.084 3.916 13 C -0.112 4.112 14 C -0.133 4.133 15 C 0.055 3.945 16 N -0.450 5.450 17 C 0.016 3.984 18 C 0.072 3.928 19 C 0.181 3.819 20 H 0.066 0.934 21 N -0.711 5.711 22 C -0.248 4.248 23 H 0.072 0.928 24 C -0.008 4.008 25 N -0.929 5.929 26 Si 0.907 3.093 27 H -0.280 1.280 28 H -0.291 1.291 29 H -0.291 1.291 30 H 0.047 0.953 31 H 0.070 0.930 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.067 0.933 35 H 0.050 0.950 36 H 0.073 0.927 37 H 0.064 0.936 38 H 0.098 0.902 39 H 0.096 0.904 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.142 0.858 45 H 0.141 0.859 46 H 0.157 0.843 47 H 0.160 0.840 48 H 0.059 0.941 49 H 0.074 0.926 50 H 0.390 0.610 51 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.117 -14.196 14.793 20.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.088 4.088 3 C -0.186 4.186 4 C -0.005 4.005 5 N -0.343 5.343 6 C 0.316 3.684 7 O -0.434 6.434 8 C -0.174 4.174 9 C -0.138 4.138 10 C -0.020 4.020 11 O -0.219 6.219 12 C 0.036 3.964 13 C -0.139 4.139 14 C -0.152 4.152 15 C -0.103 4.103 16 N -0.159 5.159 17 C -0.142 4.142 18 C -0.054 4.054 19 C 0.068 3.932 20 H 0.083 0.917 21 N -0.353 5.353 22 C -0.379 4.379 23 H 0.090 0.910 24 C -0.205 4.205 25 N -0.576 5.576 26 Si 0.738 3.262 27 H -0.205 1.205 28 H -0.218 1.218 29 H -0.218 1.218 30 H 0.066 0.934 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.086 0.914 35 H 0.069 0.931 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.116 0.884 39 H 0.114 0.886 40 H 0.100 0.900 41 H 0.101 0.899 42 H 0.087 0.913 43 H 0.086 0.914 44 H 0.160 0.840 45 H 0.159 0.841 46 H 0.175 0.825 47 H 0.177 0.823 48 H 0.077 0.923 49 H 0.092 0.908 50 H 0.227 0.773 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 4.196 -14.299 14.585 20.851 hybrid contribution 0.018 0.017 -0.452 0.452 sum 4.215 -14.281 14.133 20.529 Atomic orbital electron populations 1.21630 0.93549 1.02120 1.01529 1.22031 0.96525 0.95389 0.94861 1.21637 1.00451 0.94672 1.01852 1.22290 1.00518 0.80162 0.97535 1.48514 1.71638 1.06048 1.08124 1.20102 0.76309 0.85851 0.86113 1.90682 1.51535 1.86479 1.14694 1.21484 1.05087 0.91748 0.99093 1.21213 1.05260 0.89475 0.97894 1.22969 1.01950 0.88003 0.89066 1.86083 1.87762 1.12281 1.35742 1.20106 0.97024 0.84850 0.94401 1.20985 1.01941 0.91135 0.99797 1.22032 0.99299 0.96195 0.97714 1.22686 0.99437 0.98895 0.89255 1.67543 1.09350 1.00254 1.38747 1.23011 1.03119 0.94396 0.93663 1.23356 1.01571 1.03065 0.77427 1.21257 0.95413 0.89628 0.86875 0.91662 1.42499 1.13115 1.79286 1.00412 1.19285 0.96789 1.38169 0.83654 0.90982 1.24756 0.95982 1.01742 0.97980 1.69659 1.06542 1.52256 1.29166 0.86136 0.77995 0.77529 0.84586 1.20483 1.21793 1.21801 0.93361 0.91108 0.92651 0.92759 0.91410 0.93120 0.90906 0.91743 0.88381 0.88568 0.89987 0.89919 0.91347 0.91425 0.83974 0.84089 0.82547 0.82319 0.92279 0.90766 0.77338 0.93368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.04 7.72 37.16 0.29 -1.76 16 2 C -0.09 -1.30 0.88 -152.22 -0.13 -1.44 16 3 C -0.13 -1.75 8.67 37.16 0.32 -1.43 16 4 C 0.12 1.70 5.84 -2.53 -0.01 1.68 16 5 N -0.61 -9.09 3.31 -170.51 -0.56 -9.66 16 6 C 0.53 7.81 7.85 -10.98 -0.09 7.72 16 7 O -0.55 -9.83 16.24 5.55 0.09 -9.74 16 8 C -0.13 -1.47 4.89 -27.88 -0.14 -1.60 16 9 C -0.10 -1.05 4.87 -26.73 -0.13 -1.18 16 10 C 0.06 0.49 4.75 37.16 0.18 0.67 16 11 O -0.31 -3.25 10.15 -19.45 -0.20 -3.45 16 12 C 0.08 0.85 6.71 -39.07 -0.26 0.59 16 13 C -0.11 -0.95 10.13 -39.14 -0.40 -1.34 16 14 C -0.13 -0.93 10.11 -39.46 -0.40 -1.33 16 15 C 0.05 0.46 11.18 -17.54 -0.20 0.26 16 16 N -0.45 -4.91 10.36 -13.12 -0.14 -5.05 16 17 C 0.02 0.17 10.22 -17.37 -0.18 -0.01 16 18 C 0.07 1.13 5.85 -3.07 -0.02 1.11 16 19 C 0.18 3.18 2.86 -65.96 -0.19 2.99 16 20 H 0.07 1.17 8.00 -51.93 -0.42 0.75 16 21 N -0.71 -15.83 5.08 -51.52 -0.26 -16.09 16 22 C -0.25 -6.25 9.98 -15.06 -0.15 -6.40 16 23 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 24 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 25 N -0.93 -26.27 13.06 55.49 0.72 -25.54 16 26 Si 0.91 21.11 29.55 -169.99 -5.02 16.09 16 27 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 28 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 29 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 1.23 6.74 -51.93 -0.35 0.88 16 32 H 0.05 0.92 7.81 -51.93 -0.41 0.51 16 33 H 0.05 0.69 8.11 -51.93 -0.42 0.27 16 34 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.07 1.07 7.95 -51.93 -0.41 0.66 16 37 H 0.06 0.88 8.04 -51.93 -0.42 0.46 16 38 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.08 0.93 8.10 -51.93 -0.42 0.50 16 41 H 0.08 0.96 8.10 -51.93 -0.42 0.54 16 42 H 0.07 0.54 7.67 -51.93 -0.40 0.14 16 43 H 0.07 0.52 7.69 -51.93 -0.40 0.12 16 44 H 0.14 0.97 8.06 -52.49 -0.42 0.54 16 45 H 0.14 0.55 8.06 -52.49 -0.42 0.12 16 46 H 0.16 0.87 8.06 -52.48 -0.42 0.45 16 47 H 0.16 1.38 6.32 -52.49 -0.33 1.05 16 48 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 49 H 0.07 1.27 8.03 -51.93 -0.42 0.85 16 50 H 0.39 9.26 5.43 -40.82 -0.22 9.04 16 51 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 414.22 15.07 6.24 6.24 Total: -1.00 -31.22 414.22 -9.11 -40.33 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: -8.38 Total: 8.64 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: -1.60 Total: -1.78 kcal Atomic # 7 Polarization: -56.10 SS G_CDS: -0.24 Total: -56.33 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: -0.11 Total: -13.19 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -31.22 -9.11 -40.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755766768.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.349 kcal (2) G-P(sol) polarization free energy of solvation -31.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds