Wall clock time and date at job start Wed Apr 1 2020 05:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 110.91691 * 2 1 4 4 C 1.54914 * 111.00263 * 123.89858 * 2 1 3 5 5 N 1.47426 * 104.82992 * 81.06932 * 4 2 1 6 6 C 1.34775 * 125.64489 * 204.09098 * 5 4 2 7 7 O 1.21286 * 120.00271 * 0.02562 * 6 5 4 8 8 C 1.50705 * 119.99749 * 180.02562 * 6 5 4 9 9 C 1.53007 * 109.47017 * 180.02562 * 8 6 5 10 10 C 1.52998 * 109.47054 * 180.02562 * 9 8 6 11 11 O 1.42894 * 109.47170 * 180.02562 * 10 9 8 12 12 C 1.35909 * 117.00210 * 179.97438 * 11 10 9 13 13 C 1.39143 * 120.47448 * 179.97438 * 12 11 10 14 14 C 1.38537 * 118.37269 * 180.02562 * 13 12 11 15 15 C 1.38255 * 119.22094 * 0.02562 * 14 13 12 16 16 N 1.31848 * 120.88734 * 0.02562 * 15 14 13 17 17 C 1.31840 * 121.78153 * 359.69692 * 16 15 14 18 18 C 1.47018 * 108.70517 * 24.12623 * 5 4 2 19 19 C 1.54325 * 107.40412 * 358.86539 * 18 5 4 20 20 H 1.09000 * 110.72188 * 96.24097 * 19 18 5 21 21 N 1.46495 * 110.72250 * 219.52320 * 19 18 5 22 22 C 1.36934 * 119.99717 * 273.54393 * 21 19 18 23 23 H 1.08002 * 120.00471 * 359.97438 * 22 21 19 24 24 C 1.38816 * 119.99836 * 180.02562 * 22 21 19 25 25 N 1.31613 * 120.00160 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 119.99860 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.47015 * 359.97438 * 26 24 22 28 28 H 1.48497 * 109.47480 * 119.99732 * 26 24 22 29 29 H 1.48507 * 109.46999 * 239.99513 * 26 24 22 30 30 H 1.08998 * 109.47124 * 297.54972 * 1 2 3 31 31 H 1.09000 * 109.46711 * 57.55324 * 1 2 3 32 32 H 1.08996 * 109.47179 * 177.55223 * 1 2 3 33 33 H 1.08997 * 109.47294 * 182.44461 * 3 2 1 34 34 H 1.08997 * 109.47279 * 302.45141 * 3 2 1 35 35 H 1.09006 * 109.47100 * 62.44935 * 3 2 1 36 36 H 1.08999 * 110.37121 * 322.22667 * 4 2 1 37 37 H 1.09001 * 110.45739 * 199.95279 * 4 2 1 38 38 H 1.08998 * 109.47418 * 300.00009 * 8 6 5 39 39 H 1.08995 * 109.46873 * 60.00330 * 8 6 5 40 40 H 1.08998 * 109.46906 * 300.00165 * 9 8 6 41 41 H 1.09004 * 109.46954 * 60.00316 * 9 8 6 42 42 H 1.09002 * 109.47090 * 300.00262 * 10 9 8 43 43 H 1.08995 * 109.46969 * 60.00092 * 10 9 8 44 44 H 1.08001 * 120.81303 * 359.97438 * 13 12 11 45 45 H 1.08002 * 120.38804 * 180.02562 * 14 13 12 46 46 H 1.08003 * 119.55370 * 179.97438 * 15 14 13 47 47 H 1.07999 * 119.65829 * 180.29081 * 17 16 15 48 48 H 1.09002 * 109.88241 * 118.36067 * 18 5 4 49 49 H 1.09000 * 109.88049 * 239.37196 * 18 5 4 50 50 H 0.96997 * 120.00433 * 93.54551 * 21 19 18 51 51 H 0.97005 * 120.00291 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0762 1.4292 0.0000 4 6 2.0852 -0.8066 1.2004 5 7 2.0139 -2.2159 0.7734 6 6 1.9471 -3.2828 1.5942 7 8 1.9418 -3.1237 2.7965 8 6 1.8791 -4.6736 1.0178 9 6 1.8105 -5.6943 2.1556 10 6 1.7421 -7.1064 1.5706 11 8 1.6774 -8.0596 2.6331 12 6 1.6108 -9.3710 2.2825 13 6 1.5458 -10.3602 3.2589 14 6 1.4799 -11.6830 2.8526 15 6 1.4813 -11.9748 1.5012 16 7 1.5449 -11.0134 0.6012 17 6 1.6035 -9.7422 0.9460 18 6 2.0286 -2.2646 -0.6959 19 6 2.0842 -0.8090 -1.2055 20 1 3.1108 -0.5167 -1.4263 21 7 1.2306 -0.6394 -2.3840 22 6 1.7245 -0.9111 -3.6319 23 1 2.7435 -1.2500 -3.7475 24 6 0.9158 -0.7499 -4.7486 25 7 -0.3257 -0.3364 -4.6079 26 14 1.5894 -1.1212 -6.4509 27 1 3.0013 -1.5674 -6.3382 28 1 0.7793 -2.1948 -7.0805 29 1 1.5232 0.1040 -7.2875 30 1 -0.3633 0.4753 0.9111 31 1 -0.3633 0.5514 -0.8673 32 1 -0.3633 -1.0267 -0.0439 33 1 3.1650 1.4020 -0.0438 34 1 1.6909 1.9654 -0.8672 35 1 1.7619 1.9383 0.9112 36 1 1.4672 -0.6461 2.0838 37 1 3.1180 -0.5238 1.4044 38 1 0.9901 -4.7654 0.3939 39 1 2.7673 -4.8607 0.4145 40 1 2.6993 -5.6028 2.7799 41 1 0.9220 -5.5071 2.7587 42 1 0.8535 -7.1982 0.9460 43 1 2.6307 -7.2934 0.9678 44 1 1.5476 -10.1030 4.3079 45 1 1.4279 -12.4769 3.5830 46 1 1.4305 -13.0043 1.1785 47 1 1.6499 -8.9823 0.1800 48 1 2.9064 -2.8117 -1.0399 49 1 1.1232 -2.7504 -1.0597 50 1 0.3156 -0.3347 -2.2803 51 1 -0.8909 -0.2241 -5.3882 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755766768.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:16:02 Heat of formation + Delta-G solvation = -50.549987 kcal Electronic energy + Delta-G solvation = -29944.635612 eV Core-core repulsion = 25843.596820 eV Total energy + Delta-G solvation = -4101.038792 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.60455 -41.33331 -39.52871 -39.09711 -35.84561 -35.04525 -34.48098 -33.24903 -32.63655 -31.24968 -29.27750 -28.93488 -28.27596 -26.89425 -25.78713 -24.82170 -24.01724 -23.00117 -22.41102 -20.37173 -19.95244 -19.16516 -19.10569 -18.14493 -17.63845 -17.60759 -17.43734 -17.10757 -16.57083 -16.34532 -15.77949 -15.61255 -15.35018 -15.23335 -14.84093 -14.76166 -14.37666 -14.27791 -14.14709 -13.98815 -13.75475 -13.47982 -13.37313 -13.32154 -13.02465 -12.96250 -12.85922 -12.79450 -12.61393 -12.51754 -12.34753 -12.07765 -12.02956 -11.85202 -11.74650 -11.50335 -11.30750 -10.99005 -10.85225 -10.69586 -10.45134 -9.61317 -9.48409 -9.00938 -7.91522 -5.19905 0.12676 0.28226 1.50754 1.52630 1.60150 1.60917 1.81507 2.22069 2.59289 2.80642 3.34267 3.40783 3.53670 3.63467 3.71573 3.80480 3.83746 3.86781 3.91300 4.01452 4.06659 4.16954 4.23977 4.30775 4.33343 4.36351 4.44180 4.47023 4.52723 4.57656 4.63846 4.71249 4.79632 4.85059 4.92048 4.98815 4.99031 5.03685 5.08838 5.13288 5.13479 5.18438 5.24786 5.32421 5.42383 5.52104 5.57488 5.59050 6.21085 6.30108 6.54619 6.95855 7.12491 7.38751 8.12029 8.35800 9.31665 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009871 B = 0.002186 C = 0.001840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2835.856529 B =12808.138091 C =15213.033975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.079 4.079 3 C -0.124 4.124 4 C 0.120 3.880 5 N -0.610 5.610 6 C 0.524 3.476 7 O -0.586 6.586 8 C -0.128 4.128 9 C -0.092 4.092 10 C 0.057 3.943 11 O -0.322 6.322 12 C 0.067 3.933 13 C -0.121 4.121 14 C -0.122 4.122 15 C 0.046 3.954 16 N -0.481 5.481 17 C 0.001 3.999 18 C 0.086 3.914 19 C 0.172 3.828 20 H 0.068 0.932 21 N -0.721 5.721 22 C -0.235 4.235 23 H 0.081 0.919 24 C -0.071 4.071 25 N -0.967 5.967 26 Si 0.965 3.035 27 H -0.264 1.264 28 H -0.298 1.298 29 H -0.299 1.299 30 H 0.068 0.932 31 H 0.048 0.952 32 H 0.041 0.959 33 H 0.065 0.935 34 H 0.047 0.953 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.109 0.891 39 H 0.118 0.882 40 H 0.071 0.929 41 H 0.066 0.934 42 H 0.078 0.922 43 H 0.082 0.918 44 H 0.156 0.844 45 H 0.177 0.823 46 H 0.182 0.818 47 H 0.166 0.834 48 H 0.075 0.925 49 H 0.061 0.939 50 H 0.380 0.620 51 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.537 -15.682 15.757 22.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.080 4.080 3 C -0.182 4.182 4 C -0.003 4.003 5 N -0.343 5.343 6 C 0.314 3.686 7 O -0.467 6.467 8 C -0.167 4.167 9 C -0.130 4.130 10 C -0.018 4.018 11 O -0.235 6.235 12 C 0.020 3.980 13 C -0.147 4.147 14 C -0.141 4.141 15 C -0.111 4.111 16 N -0.191 5.191 17 C -0.157 4.157 18 C -0.040 4.040 19 C 0.061 3.939 20 H 0.086 0.914 21 N -0.362 5.362 22 C -0.367 4.367 23 H 0.099 0.901 24 C -0.263 4.263 25 N -0.618 5.618 26 Si 0.795 3.205 27 H -0.188 1.188 28 H -0.225 1.225 29 H -0.227 1.227 30 H 0.087 0.913 31 H 0.067 0.933 32 H 0.060 0.940 33 H 0.084 0.916 34 H 0.066 0.934 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.097 0.903 38 H 0.127 0.873 39 H 0.136 0.864 40 H 0.090 0.910 41 H 0.085 0.915 42 H 0.096 0.904 43 H 0.101 0.899 44 H 0.174 0.826 45 H 0.194 0.806 46 H 0.199 0.801 47 H 0.183 0.817 48 H 0.093 0.907 49 H 0.079 0.921 50 H 0.215 0.785 51 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 5.665 -15.794 15.575 22.894 hybrid contribution -0.396 0.440 -0.614 0.853 sum 5.269 -15.355 14.961 22.076 Atomic orbital electron populations 1.21552 0.94130 1.01045 1.01478 1.21977 0.95972 0.96186 0.93903 1.21605 1.01080 0.93468 1.02043 1.22305 1.01281 0.79832 0.96878 1.48542 1.71608 1.06481 1.07667 1.20722 0.75242 0.86941 0.85683 1.90669 1.52936 1.87034 1.16061 1.21504 1.06561 0.89365 0.99320 1.21077 1.03984 0.90450 0.97459 1.22960 1.03160 0.86808 0.88826 1.86042 1.88160 1.12796 1.36466 1.20294 0.98043 0.84829 0.94883 1.21351 1.01495 0.91546 1.00353 1.22405 0.97329 0.96474 0.97942 1.23226 0.98536 0.99601 0.89759 1.67545 1.10608 1.00864 1.40082 1.23133 1.03841 0.94632 0.94054 1.23000 1.01657 1.01460 0.77892 1.21460 0.94803 0.91286 0.86347 0.91437 1.42617 1.13218 1.79357 1.01046 1.19658 0.96780 1.35502 0.84711 0.90142 1.25449 0.96433 1.03225 1.01210 1.69803 1.07804 1.54793 1.29376 0.85193 0.77987 0.76539 0.80739 1.18838 1.22549 1.22708 0.91338 0.93313 0.94029 0.91567 0.93420 0.90939 0.90975 0.90290 0.87321 0.86411 0.91006 0.91492 0.90407 0.89938 0.82601 0.80568 0.80105 0.81721 0.90708 0.92089 0.78469 0.94192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.86 7.72 71.98 0.56 -3.30 16 2 C -0.08 -2.28 0.88 -50.70 -0.04 -2.33 16 3 C -0.12 -3.19 8.67 71.98 0.62 -2.57 16 4 C 0.12 3.23 5.84 86.86 0.51 3.74 16 5 N -0.61 -17.22 3.31 -811.77 -2.69 -19.91 16 6 C 0.52 14.83 7.85 87.66 0.69 15.52 16 7 O -0.59 -20.33 16.24 -3.05 -0.05 -20.38 16 8 C -0.13 -2.60 4.89 29.85 0.15 -2.45 16 9 C -0.09 -1.84 4.87 30.60 0.15 -1.69 16 10 C 0.06 0.96 4.75 71.98 0.34 1.30 16 11 O -0.32 -6.65 10.15 -92.53 -0.94 -7.59 16 12 C 0.07 1.31 6.71 22.60 0.15 1.46 16 13 C -0.12 -1.87 10.13 22.56 0.23 -1.64 16 14 C -0.12 -1.43 10.11 22.35 0.23 -1.20 16 15 C 0.05 0.69 11.18 84.69 0.95 1.64 16 16 N -0.48 -10.11 10.36 -195.44 -2.02 -12.14 16 17 C 0.00 0.01 10.22 84.80 0.87 0.88 16 18 C 0.09 2.57 5.85 86.73 0.51 3.08 16 19 C 0.17 5.84 2.86 46.27 0.13 5.98 16 20 H 0.07 2.29 8.00 -2.39 -0.02 2.28 16 21 N -0.72 -32.06 5.08 -316.92 -1.61 -33.67 16 22 C -0.23 -11.72 9.98 84.03 0.84 -10.88 16 23 H 0.08 3.82 7.83 -2.91 -0.02 3.79 16 24 C -0.07 -3.78 5.50 84.86 0.47 -3.31 16 25 N -0.97 -55.89 13.06 21.65 0.28 -55.61 16 26 Si 0.97 43.57 29.55 68.60 2.03 45.59 16 27 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 28 H -0.30 -13.66 7.11 99.48 0.71 -12.95 16 29 H -0.30 -13.79 7.11 99.48 0.71 -13.09 16 30 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.05 1.73 6.74 -2.39 -0.02 1.71 16 32 H 0.04 1.37 7.81 -2.39 -0.02 1.36 16 33 H 0.07 1.53 8.11 -2.39 -0.02 1.52 16 34 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 36 H 0.07 2.00 7.95 -2.39 -0.02 1.98 16 37 H 0.08 1.94 8.04 -2.39 -0.02 1.92 16 38 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.07 1.59 8.10 -2.39 -0.02 1.57 16 41 H 0.07 1.55 8.10 -2.38 -0.02 1.53 16 42 H 0.08 1.15 7.67 -2.39 -0.02 1.13 16 43 H 0.08 1.13 7.69 -2.39 -0.02 1.12 16 44 H 0.16 1.86 8.06 -2.91 -0.02 1.84 16 45 H 0.18 0.72 8.06 -2.91 -0.02 0.69 16 46 H 0.18 1.59 8.06 -2.91 -0.02 1.56 16 47 H 0.17 2.80 6.32 -2.91 -0.02 2.78 16 48 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 49 H 0.06 2.02 8.03 -2.39 -0.02 2.00 16 50 H 0.38 18.42 5.43 -92.71 -0.50 17.92 16 51 H 0.25 14.13 8.31 -92.70 -0.77 13.36 16 Total: -1.00 -67.98 414.22 2.74 -65.24 By element: Atomic # 1 Polarization: 33.84 SS G_CDS: 0.41 Total: 34.25 kcal Atomic # 6 Polarization: -3.11 SS G_CDS: 7.33 Total: 4.22 kcal Atomic # 7 Polarization: -115.29 SS G_CDS: -6.04 Total: -121.33 kcal Atomic # 8 Polarization: -26.98 SS G_CDS: -0.99 Total: -27.97 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.59 kcal Total: -67.98 2.74 -65.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755766768.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.686 kcal (2) G-P(sol) polarization free energy of solvation -67.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds