Wall clock time and date at job start Wed Apr 1 2020 04:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30175 * 126.80729 * 2 1 4 4 O 1.20922 * 111.60307 * 180.02562 * 3 2 1 5 5 C 1.34036 * 111.57190 * 359.76281 * 4 3 2 6 6 C 1.50694 * 126.77755 * 180.28424 * 5 4 3 7 7 C 1.35454 * 106.44560 * 0.37952 * 5 4 3 8 8 C 1.50698 * 128.00854 * 179.91155 * 7 5 4 9 9 C 1.53001 * 109.47030 * 303.11792 * 8 7 5 10 10 C 1.52998 * 109.47098 * 183.11895 * 8 7 5 11 11 C 1.50700 * 109.47010 * 63.11818 * 8 7 5 12 12 O 1.21283 * 120.00128 * 5.75634 * 11 8 7 13 13 N 1.34776 * 120.00192 * 185.75688 * 11 8 7 14 14 C 1.46501 * 120.00205 * 179.97438 * 13 11 8 15 15 C 1.50697 * 109.47234 * 180.02562 * 14 13 11 16 16 C 1.29454 * 117.69528 * 94.99899 * 15 14 13 17 17 C 1.50317 * 123.65552 * 180.57525 * 16 15 14 18 18 N 1.47004 * 109.16583 * 349.28704 * 17 16 15 19 19 C 1.36940 * 121.37620 * 222.96726 * 18 17 16 20 20 H 1.07999 * 119.99601 * 148.06694 * 19 18 17 21 21 C 1.38803 * 119.99933 * 328.06376 * 19 18 17 22 22 N 1.31618 * 120.00268 * 2.53860 * 21 19 18 23 23 Si 1.86800 * 119.99984 * 182.53897 * 21 19 18 24 24 H 1.48500 * 109.47168 * 59.99964 * 23 21 19 25 25 H 1.48500 * 109.47271 * 180.02562 * 23 21 19 26 26 H 1.48506 * 109.46905 * 299.99818 * 23 21 19 27 27 C 1.47343 * 117.25012 * 42.94692 * 18 17 16 28 28 C 1.49959 * 117.69131 * 275.22437 * 15 14 13 29 29 H 1.08998 * 109.47303 * 262.27365 * 1 2 3 30 30 H 1.09004 * 109.46486 * 22.27325 * 1 2 3 31 31 H 1.09000 * 109.46760 * 142.26785 * 1 2 3 32 32 H 1.09001 * 109.47157 * 274.85034 * 6 5 4 33 33 H 1.08997 * 109.47506 * 34.85757 * 6 5 4 34 34 H 1.09004 * 109.47051 * 154.85373 * 6 5 4 35 35 H 1.09001 * 109.46651 * 175.73320 * 9 8 7 36 36 H 1.08998 * 109.46944 * 295.73071 * 9 8 7 37 37 H 1.09001 * 109.46830 * 55.73295 * 9 8 7 38 38 H 1.09005 * 109.47161 * 305.04914 * 10 8 7 39 39 H 1.08995 * 109.47346 * 65.05204 * 10 8 7 40 40 H 1.09005 * 109.47252 * 185.05377 * 10 8 7 41 41 H 0.97005 * 119.99712 * 0.02562 * 13 11 8 42 42 H 1.09000 * 109.46782 * 60.00361 * 14 13 11 43 43 H 1.08998 * 109.46991 * 300.00330 * 14 13 11 44 44 H 1.08010 * 118.17334 * 0.86241 * 16 15 14 45 45 H 1.09004 * 109.52477 * 109.18861 * 17 16 15 46 46 H 1.08998 * 109.52749 * 229.37616 * 17 16 15 47 47 H 0.97004 * 120.00322 * 180.02562 * 22 21 19 48 48 H 1.08999 * 109.78151 * 57.80686 * 27 18 17 49 49 H 1.08994 * 109.77904 * 178.62195 * 27 18 17 50 50 H 1.08997 * 109.44216 * 40.82233 * 28 15 14 51 51 H 1.09002 * 109.13146 * 281.42755 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4538 0.7251 -0.0005 5 6 3.6025 -0.6070 0.0042 6 6 4.9021 -1.3697 0.0112 7 6 2.3539 -1.1322 -0.0006 8 6 1.9589 -2.5865 -0.0001 9 6 2.5913 -3.2871 -1.2043 10 6 0.4357 -2.7013 -0.0853 11 6 2.4415 -3.2376 1.2704 12 8 2.9536 -2.5649 2.1400 13 7 2.3040 -4.5675 1.4404 14 6 2.7736 -5.2006 2.6753 15 6 2.5049 -6.6821 2.6139 16 6 3.4629 -7.4509 2.2051 17 6 3.3373 -8.9436 2.0801 18 7 2.0901 -9.3788 2.7252 19 6 2.0502 -10.4917 3.5222 20 1 1.3667 -10.5336 4.3572 21 6 2.8883 -11.5658 3.2566 22 7 3.7562 -11.4951 2.2697 23 14 2.7844 -13.1118 4.3000 24 1 1.4195 -13.6877 4.1970 25 1 3.7784 -14.1033 3.8162 26 1 3.0732 -12.7730 5.7168 27 6 0.8848 -8.5678 2.4793 28 6 1.1450 -7.1614 3.0258 29 1 -0.3634 -0.1382 1.0183 30 1 -0.3632 0.9511 -0.3895 31 1 -0.3633 -0.8128 -0.6289 32 1 5.2630 -1.4820 -1.0112 33 1 5.6403 -0.8246 0.5994 34 1 4.7430 -2.3546 0.4505 35 1 2.3684 -4.3533 -1.1626 36 1 2.1848 -2.8666 -2.1241 37 1 3.6713 -3.1405 -1.1840 38 1 -0.0178 -2.1268 0.7225 39 1 0.0950 -2.3111 -1.0443 40 1 0.1445 -3.7478 0.0053 41 1 1.8948 -5.1056 0.7447 42 1 2.2469 -4.7704 3.5271 43 1 3.8445 -5.0302 2.7864 44 1 4.4064 -6.9949 1.9436 45 1 3.3179 -9.2206 1.0260 46 1 4.1861 -9.4228 2.5679 47 1 4.3417 -12.2459 2.0839 48 1 0.6867 -8.5166 1.4087 49 1 0.0312 -9.0107 2.9924 50 1 0.3876 -6.4790 2.6400 51 1 1.0876 -7.1811 4.1141 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755891943.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:39 Heat of formation + Delta-G solvation = 59.606118 kcal Electronic energy + Delta-G solvation = -31313.065040 eV Core-core repulsion = 27216.802975 eV Total energy + Delta-G solvation = -4096.262065 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -45.06724 -40.32915 -37.93249 -36.60658 -35.02508 -34.14676 -33.21086 -32.36596 -30.82481 -29.75995 -29.58137 -28.04425 -27.05995 -26.97906 -24.57374 -23.90172 -22.78876 -22.19133 -21.10818 -20.53552 -19.70112 -17.91825 -17.71106 -17.30745 -16.64971 -16.13063 -15.73424 -15.44859 -15.07243 -14.72658 -14.54262 -14.36332 -13.98739 -13.87666 -13.71972 -13.56255 -13.44778 -13.26899 -13.14497 -12.95204 -12.71830 -12.59368 -12.56018 -12.23135 -12.13170 -12.04335 -11.73073 -11.63322 -11.48903 -11.39877 -10.88153 -10.87509 -10.84151 -10.43380 -10.35953 -10.10064 -9.94267 -9.76527 -9.63513 -9.25152 -9.01651 -8.72055 -8.09318 -6.68616 -5.86672 -3.33924 1.34279 2.01005 2.55420 2.57444 2.95453 3.34588 3.39841 3.40576 3.48901 3.93142 4.25131 4.32088 4.42969 4.45141 4.58430 4.75789 5.00950 5.06916 5.09807 5.18138 5.19021 5.20931 5.25885 5.30704 5.36003 5.38079 5.40130 5.46255 5.53255 5.53573 5.60217 5.71551 5.72913 5.78569 5.88612 5.89423 5.98922 6.02937 6.12238 6.29145 6.40781 6.49208 6.70195 6.82426 7.13944 7.25942 7.29736 7.51818 7.70593 7.79923 8.15291 8.17375 8.38851 9.16426 9.75111 10.36658 11.22992 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.026158 B = 0.002122 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.172080 B =13190.127793 C =13597.054159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.032 3.968 3 N -0.371 5.371 4 O 0.093 5.907 5 C -0.003 4.003 6 C -0.075 4.075 7 C -0.179 4.179 8 C 0.000 4.000 9 C -0.146 4.146 10 C -0.150 4.150 11 C 0.517 3.483 12 O -0.535 6.535 13 N -0.716 5.716 14 C 0.158 3.842 15 C -0.169 4.169 16 C -0.123 4.123 17 C 0.193 3.807 18 N -0.596 5.596 19 C -0.250 4.250 20 H 0.066 0.934 21 C 0.007 3.993 22 N -0.911 5.911 23 Si 0.906 3.094 24 H -0.282 1.282 25 H -0.290 1.290 26 H -0.283 1.283 27 C 0.144 3.856 28 C -0.090 4.090 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.094 0.906 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.401 0.599 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.093 0.907 45 H 0.040 0.960 46 H 0.099 0.901 47 H 0.256 0.744 48 H 0.022 0.978 49 H 0.057 0.943 50 H 0.052 0.948 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.434 19.106 -8.960 21.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.127 4.127 3 N -0.078 5.078 4 O 0.030 5.970 5 C -0.066 4.066 6 C -0.132 4.132 7 C -0.184 4.184 8 C -0.003 4.003 9 C -0.204 4.204 10 C -0.207 4.207 11 C 0.302 3.698 12 O -0.412 6.412 13 N -0.368 5.368 14 C 0.036 3.964 15 C -0.170 4.170 16 C -0.144 4.144 17 C 0.068 3.932 18 N -0.319 5.319 19 C -0.380 4.380 20 H 0.083 0.917 21 C -0.192 4.192 22 N -0.555 5.555 23 Si 0.736 3.264 24 H -0.208 1.208 25 H -0.216 1.216 26 H -0.209 1.209 27 C 0.018 3.982 28 C -0.129 4.129 29 H 0.099 0.901 30 H 0.091 0.909 31 H 0.113 0.887 32 H 0.104 0.896 33 H 0.103 0.897 34 H 0.110 0.890 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.095 0.905 40 H 0.088 0.912 41 H 0.236 0.764 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.111 0.889 45 H 0.057 0.943 46 H 0.117 0.883 47 H 0.066 0.934 48 H 0.040 0.960 49 H 0.075 0.925 50 H 0.070 0.930 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.134 20.753 -8.344 22.586 hybrid contribution -0.167 -1.776 0.322 1.812 sum -3.301 18.977 -8.022 20.866 Atomic orbital electron populations 1.20659 0.86309 1.04123 1.03632 1.23304 0.98701 0.88287 1.02446 1.73814 0.89265 1.23864 1.20853 1.84771 1.21637 1.22495 1.68106 1.24093 0.98156 0.83505 1.00861 1.20418 0.90230 0.99142 1.03433 1.20204 0.91804 0.95283 1.11065 1.18964 0.97740 0.89162 0.94484 1.22019 1.01556 1.00562 0.96220 1.22279 0.91935 1.03327 1.03142 1.20351 0.78955 0.82290 0.88162 1.90713 1.43670 1.63026 1.43797 1.46194 1.62238 1.07342 1.20976 1.20463 0.99100 0.90915 0.85965 1.20466 0.97717 0.92326 1.06460 1.23376 0.96564 0.99741 0.94701 1.19870 0.91296 0.85300 0.96740 1.44046 1.02660 1.28696 1.56525 1.19090 1.21337 0.91504 1.06031 0.91674 1.25248 0.99231 0.97585 0.97094 1.69896 1.23447 1.31139 1.31040 0.86317 0.77453 0.83031 0.79634 1.20847 1.21552 1.20938 1.20965 0.90791 0.89638 0.96826 1.20753 0.92936 0.98580 1.00658 0.90101 0.90919 0.88720 0.89577 0.89705 0.88992 0.91046 0.91063 0.91484 0.90963 0.90530 0.91197 0.76396 0.91691 0.91695 0.88925 0.94275 0.88294 0.93405 0.95955 0.92474 0.92959 0.91910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.73 8.57 36.01 0.31 -0.42 16 2 C 0.03 0.37 7.25 -82.10 -0.60 -0.23 16 3 N -0.37 -4.97 12.07 33.42 0.40 -4.56 16 4 O 0.09 1.19 11.20 17.19 0.19 1.38 16 5 C 0.00 -0.03 6.91 -35.30 -0.24 -0.27 16 6 C -0.07 -0.65 8.72 36.00 0.31 -0.33 16 7 C -0.18 -2.01 4.29 -104.42 -0.45 -2.46 16 8 C 0.00 0.00 0.65 -156.81 -0.10 -0.10 16 9 C -0.15 -1.08 8.28 37.16 0.31 -0.78 16 10 C -0.15 -1.11 6.74 37.16 0.25 -0.86 16 11 C 0.52 6.33 5.46 -10.99 -0.06 6.27 16 12 O -0.54 -8.56 14.89 5.55 0.08 -8.48 16 13 N -0.72 -8.30 5.31 -61.47 -0.33 -8.63 16 14 C 0.16 2.20 5.66 -5.19 -0.03 2.17 16 15 C -0.17 -2.70 5.23 -101.00 -0.53 -3.23 16 16 C -0.12 -2.20 9.47 -35.78 -0.34 -2.53 16 17 C 0.19 4.35 5.17 -5.10 -0.03 4.32 16 18 N -0.60 -14.29 3.01 -173.67 -0.52 -14.81 16 19 C -0.25 -6.64 9.67 -15.06 -0.15 -6.79 16 20 H 0.07 1.70 7.83 -52.49 -0.41 1.29 16 21 C 0.01 0.18 5.32 -17.43 -0.09 0.09 16 22 N -0.91 -25.29 10.72 55.49 0.59 -24.69 16 23 Si 0.91 21.11 29.55 -169.99 -5.02 16.09 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 26 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 27 C 0.14 2.82 6.58 -3.52 -0.02 2.80 16 28 C -0.09 -1.48 5.94 -28.18 -0.17 -1.65 16 29 H 0.08 0.63 7.72 -51.93 -0.40 0.23 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.09 0.57 4.81 -51.93 -0.25 0.32 16 32 H 0.09 0.53 8.10 -51.93 -0.42 0.11 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.09 0.90 5.75 -51.93 -0.30 0.60 16 35 H 0.07 0.47 7.13 -51.93 -0.37 0.10 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.50 5.92 -51.93 -0.31 0.19 16 38 H 0.07 0.57 6.03 -51.93 -0.31 0.26 16 39 H 0.08 0.43 6.50 -51.93 -0.34 0.10 16 40 H 0.07 0.46 7.83 -51.93 -0.41 0.05 16 41 H 0.40 4.01 7.24 -40.82 -0.30 3.71 16 42 H 0.06 0.95 8.11 -51.93 -0.42 0.53 16 43 H 0.06 0.94 7.78 -51.93 -0.40 0.54 16 44 H 0.09 1.48 7.73 -52.48 -0.41 1.07 16 45 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.10 2.53 6.43 -51.93 -0.33 2.20 16 47 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 48 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 49 H 0.06 1.10 7.96 -51.93 -0.41 0.69 16 50 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 51 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 LS Contribution 396.17 15.07 5.97 5.97 Total: -1.00 -31.82 396.17 -8.13 -39.96 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -7.88 Total: 1.77 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: -1.62 Total: -3.99 kcal Atomic # 7 Polarization: -52.85 SS G_CDS: 0.15 Total: -52.70 kcal Atomic # 8 Polarization: -7.37 SS G_CDS: 0.28 Total: -7.09 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -31.82 -8.13 -39.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755891943.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.562 kcal (2) G-P(sol) polarization free energy of solvation -31.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds