Wall clock time and date at job start Wed Apr 1 2020 05:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30130 * 124.94287 * 2 1 4 4 C 1.35796 * 109.66855 * 179.97438 * 3 2 1 5 5 C 1.39753 * 133.48920 * 180.34552 * 4 3 2 6 6 C 1.38189 * 119.70889 * 180.14371 * 5 4 3 7 7 N 1.39928 * 119.81999 * 179.77437 * 6 5 4 8 8 C 1.46494 * 119.99846 * 179.72555 * 7 6 5 9 9 C 1.53004 * 109.47098 * 180.02562 * 8 7 6 10 10 H 1.08999 * 109.46890 * 54.99619 * 9 8 7 11 11 C 1.52999 * 109.46650 * 294.99978 * 9 8 7 12 12 C 1.52998 * 109.47446 * 174.99951 * 9 8 7 13 13 C 1.50700 * 109.46919 * 184.99822 * 12 9 8 14 14 H 1.07992 * 120.00124 * 0.02562 * 13 12 9 15 15 C 1.37878 * 119.99567 * 180.02562 * 13 12 9 16 16 N 1.31512 * 120.00042 * 180.02562 * 15 13 12 17 17 Si 1.86798 * 120.00301 * 0.02562 * 15 13 12 18 18 H 1.48500 * 109.47301 * 89.99849 * 17 15 13 19 19 H 1.48503 * 109.47535 * 210.00000 * 17 15 13 20 20 H 1.48503 * 109.47282 * 330.00240 * 17 15 13 21 21 C 1.39386 * 120.36639 * 359.49793 * 6 5 4 22 22 C 1.37755 * 120.38927 * 0.23136 * 21 6 5 23 23 C 1.38830 * 119.92382 * 0.02562 * 22 21 6 24 24 N 1.35991 * 124.94565 * 179.97438 * 2 1 3 25 25 C 1.46494 * 126.35663 * 0.02562 * 24 2 1 26 26 C 1.53001 * 109.47201 * 120.25276 * 25 24 2 27 27 O 1.42889 * 109.47456 * 185.71609 * 26 25 24 28 28 C 1.53000 * 109.46927 * 240.24933 * 25 24 2 29 29 O 1.42901 * 109.46879 * 175.00220 * 28 25 24 30 30 H 1.09003 * 109.47035 * 95.24071 * 1 2 3 31 31 H 1.09003 * 109.46934 * 215.23589 * 1 2 3 32 32 H 1.09001 * 109.47345 * 335.23843 * 1 2 3 33 33 H 1.08000 * 120.14494 * 359.90002 * 5 4 3 34 34 H 0.96997 * 119.99559 * 359.72382 * 7 6 5 35 35 H 1.08997 * 109.47847 * 60.00063 * 8 7 6 36 36 H 1.09001 * 109.47296 * 299.99605 * 8 7 6 37 37 H 1.09000 * 109.47498 * 60.00360 * 11 9 8 38 38 H 1.09009 * 109.47097 * 179.97438 * 11 9 8 39 39 H 1.09000 * 109.47693 * 299.99561 * 11 9 8 40 40 H 1.09002 * 109.47421 * 305.00138 * 12 9 8 41 41 H 1.09003 * 109.47081 * 65.00243 * 12 9 8 42 42 H 0.97002 * 120.00192 * 180.02562 * 16 15 13 43 43 H 1.08003 * 119.81007 * 180.25543 * 21 6 5 44 44 H 1.08000 * 120.04156 * 180.02562 * 22 21 6 45 45 H 1.08994 * 109.47407 * 0.25640 * 25 24 2 46 46 H 1.09000 * 109.47039 * 305.71900 * 26 25 24 47 47 H 1.09002 * 109.47235 * 65.71246 * 26 25 24 48 48 H 0.96708 * 114.00536 * 180.02562 * 27 26 25 49 49 H 1.08998 * 109.47642 * 295.00074 * 28 25 24 50 50 H 1.08997 * 109.47154 * 55.00860 * 28 25 24 51 51 H 0.96700 * 114.00213 * 180.02562 * 29 28 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2523 1.0667 0.0000 4 6 3.5623 0.7090 0.0006 5 6 4.7572 1.4337 0.0069 6 6 5.9652 0.7626 0.0026 7 7 7.1630 1.4859 0.0041 8 6 8.4458 0.7785 0.0056 9 6 9.5891 1.7954 0.0078 10 1 9.4675 2.4768 0.8498 11 6 9.5667 2.5905 -1.2992 12 6 10.9250 1.0606 0.1350 13 6 12.0410 2.0656 0.2606 14 1 11.8194 3.1225 0.2511 15 6 13.3448 1.6356 0.3877 16 7 14.3187 2.5125 0.4979 17 14 13.7280 -0.1926 0.4034 18 1 13.9711 -0.6594 -0.9852 19 1 14.9392 -0.4375 1.2271 20 1 12.5784 -0.9345 0.9808 21 6 5.9971 -0.6309 0.0024 22 6 4.8251 -1.3548 0.0018 23 6 3.6036 -0.6951 0.0008 24 7 2.2859 -1.1147 0.0005 25 6 1.8163 -2.5023 0.0006 26 6 2.3417 -3.2187 -1.2451 27 8 1.7769 -4.5294 -1.3147 28 6 2.3304 -3.2146 1.2533 29 8 1.7781 -4.5312 1.3131 30 1 -0.3633 -0.0939 -1.0234 31 1 -0.3633 -0.8394 0.5929 32 1 -0.3634 0.9332 0.4304 33 1 4.7366 2.5135 0.0113 34 1 7.1439 2.4557 0.0042 35 1 8.5171 0.1532 -0.8844 36 1 8.5148 0.1530 0.8956 37 1 8.6150 3.1140 -1.3898 38 1 10.3809 3.3153 -1.2975 39 1 9.6883 1.9091 -2.1412 40 1 10.9072 0.4249 1.0202 41 1 11.0875 0.4461 -0.7505 42 1 15.2360 2.2100 0.5869 43 1 6.9463 -1.1462 0.0031 44 1 4.8564 -2.4344 0.0021 45 1 0.7265 -2.5171 -0.0044 46 1 2.0607 -2.6543 -2.1343 47 1 3.4277 -3.2934 -1.1904 48 1 2.0670 -5.0426 -2.0813 49 1 3.4178 -3.2782 1.2147 50 1 2.0304 -2.6543 2.1388 51 1 2.0613 -5.0419 2.0838 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894923132.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:03 Heat of formation + Delta-G solvation = -30.700145 kcal Electronic energy + Delta-G solvation = -30210.704051 eV Core-core repulsion = 26110.526013 eV Total energy + Delta-G solvation = -4100.178038 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.36456 -38.71886 -38.17459 -36.58090 -36.27165 -34.62302 -33.73756 -32.13232 -31.17879 -30.45122 -29.23776 -27.74568 -26.88934 -26.26814 -25.69079 -22.99468 -22.67214 -21.95306 -21.00955 -20.27573 -19.31825 -18.24094 -17.54342 -17.49461 -16.97894 -16.39668 -16.31794 -16.12389 -15.84355 -14.99347 -14.89482 -14.60451 -14.24043 -14.10287 -14.01959 -13.83887 -13.58454 -13.39793 -13.22351 -13.15501 -12.97230 -12.77275 -12.56021 -12.34612 -11.98983 -11.92252 -11.77822 -11.53883 -11.43923 -11.11008 -10.85151 -10.61703 -10.56057 -10.52115 -10.34886 -9.99528 -9.97444 -9.80923 -9.65127 -9.39532 -9.15441 -8.57353 -8.18102 -7.09299 -6.07376 -4.05320 0.87756 1.66587 2.08803 2.63490 3.27413 3.35442 3.37600 3.56280 3.65520 3.78564 3.94337 4.03307 4.14528 4.41627 4.47631 4.50165 4.56666 4.77316 4.84643 4.89025 4.97536 5.06911 5.11094 5.15652 5.24873 5.26087 5.34861 5.37038 5.42212 5.52254 5.56279 5.62743 5.79479 5.97241 6.07855 6.24031 6.25672 6.32545 6.38577 6.50216 6.61942 6.71802 6.81679 6.97631 6.98767 7.12750 7.17370 7.17587 7.34108 7.50537 7.75295 7.80010 7.94620 8.49987 8.97267 9.54728 11.05834 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015680 B = 0.002060 C = 0.001884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.271898 B =13587.052819 C =14858.310860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.286 3.714 3 N -0.498 5.498 4 C 0.101 3.899 5 C -0.167 4.167 6 C 0.222 3.778 7 N -0.740 5.740 8 C 0.125 3.875 9 C -0.087 4.087 10 H 0.069 0.931 11 C -0.134 4.134 12 C -0.006 4.006 13 C -0.516 4.516 14 H 0.074 0.926 15 C 0.065 3.935 16 N -0.903 5.903 17 Si 0.878 3.122 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.266 1.266 21 C -0.160 4.160 22 C -0.071 4.071 23 C -0.008 4.008 24 N -0.484 5.484 25 C 0.146 3.854 26 C 0.073 3.927 27 O -0.549 6.549 28 C 0.072 3.928 29 O -0.549 6.549 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.097 0.903 33 H 0.126 0.874 34 H 0.400 0.600 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.034 0.966 38 H 0.068 0.932 39 H 0.045 0.955 40 H 0.017 0.983 41 H 0.013 0.987 42 H 0.263 0.737 43 H 0.132 0.868 44 H 0.117 0.883 45 H 0.115 0.885 46 H 0.051 0.949 47 H 0.053 0.947 48 H 0.381 0.619 49 H 0.053 0.947 50 H 0.051 0.949 51 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.374 -12.942 -1.591 32.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.022 3.978 3 N -0.220 5.220 4 C -0.017 4.017 5 C -0.193 4.193 6 C 0.115 3.885 7 N -0.369 5.369 8 C 0.001 3.999 9 C -0.106 4.106 10 H 0.087 0.913 11 C -0.191 4.191 12 C -0.044 4.044 13 C -0.554 4.554 14 H 0.092 0.908 15 C -0.136 4.136 16 N -0.542 5.542 17 Si 0.706 3.294 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.190 1.190 21 C -0.182 4.182 22 C -0.093 4.093 23 C -0.114 4.114 24 N -0.180 5.180 25 C 0.042 3.958 26 C -0.006 4.006 27 O -0.353 6.353 28 C -0.007 4.007 29 O -0.353 6.353 30 H 0.105 0.895 31 H 0.097 0.903 32 H 0.116 0.884 33 H 0.143 0.857 34 H 0.236 0.764 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.053 0.947 38 H 0.087 0.913 39 H 0.064 0.936 40 H 0.035 0.965 41 H 0.032 0.968 42 H 0.073 0.927 43 H 0.150 0.850 44 H 0.135 0.865 45 H 0.133 0.867 46 H 0.069 0.931 47 H 0.072 0.928 48 H 0.228 0.772 49 H 0.072 0.928 50 H 0.069 0.931 51 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -29.841 -11.975 -1.573 32.193 hybrid contribution 1.369 -1.705 0.010 2.186 sum -28.473 -13.679 -1.563 31.627 Atomic orbital electron populations 1.20396 0.84647 1.04808 1.03925 1.23566 0.95527 0.80471 0.98283 1.70441 1.01153 1.26733 1.23624 1.18538 0.91243 0.89757 1.02177 1.19383 0.87824 0.99182 1.12917 1.17472 0.86169 0.90852 0.93973 1.44923 1.02410 1.08222 1.81373 1.21630 0.82189 0.95738 1.00350 1.21238 0.94417 0.96554 0.98389 0.91289 1.21735 1.00317 1.00281 0.96808 1.19568 0.92142 0.96358 0.96333 1.21084 0.89973 0.94311 1.50025 0.90805 1.25029 0.96404 0.97444 0.94682 1.69908 0.99911 1.33784 1.50587 0.86802 0.77976 0.86334 0.78295 1.20347 1.21441 1.19034 1.20546 0.97840 0.92222 1.07625 1.19699 0.88778 0.98566 1.02214 1.18621 0.84729 0.95138 1.12919 1.44889 1.04970 1.05378 1.62741 1.20797 1.01317 0.78550 0.95167 1.22268 0.97320 0.84847 0.96204 1.86560 1.71936 1.25922 1.50843 1.22281 0.97514 0.84742 0.96186 1.86563 1.73087 1.25472 1.50141 0.89516 0.90327 0.88410 0.85655 0.76445 0.92691 0.92663 0.94724 0.91268 0.93554 0.96496 0.96832 0.92741 0.85049 0.86502 0.86735 0.93076 0.92849 0.77243 0.92835 0.93057 0.77239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.49 9.89 36.00 0.36 -0.13 16 2 C 0.29 3.06 7.85 -154.85 -1.22 1.85 16 3 N -0.50 -6.91 11.27 -8.25 -0.09 -7.01 16 4 C 0.10 1.44 7.22 -84.71 -0.61 0.83 16 5 C -0.17 -2.33 9.93 -39.03 -0.39 -2.72 16 6 C 0.22 3.02 6.64 -83.75 -0.56 2.46 16 7 N -0.74 -10.13 5.47 -58.63 -0.32 -10.45 16 8 C 0.12 1.88 4.29 -4.04 -0.02 1.86 16 9 C -0.09 -1.58 2.37 -90.62 -0.22 -1.79 16 10 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 11 C -0.13 -2.33 8.88 37.16 0.33 -2.00 16 12 C -0.01 -0.14 3.52 -27.88 -0.10 -0.24 16 13 C -0.52 -14.07 8.96 -34.44 -0.31 -14.38 16 14 H 0.07 2.16 7.30 -52.49 -0.38 1.78 16 15 C 0.07 1.86 5.47 -17.82 -0.10 1.77 16 16 N -0.90 -27.37 13.96 55.43 0.77 -26.59 16 17 Si 0.88 21.21 27.47 -169.99 -4.67 16.54 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.27 -6.11 6.54 56.52 0.37 -5.74 16 21 C -0.16 -1.99 9.29 -39.33 -0.37 -2.36 16 22 C -0.07 -0.81 8.96 -39.54 -0.35 -1.17 16 23 C -0.01 -0.10 6.25 -83.89 -0.52 -0.63 16 24 N -0.48 -4.95 2.66 -104.07 -0.28 -5.23 16 25 C 0.15 1.19 3.00 -67.93 -0.20 0.99 16 26 C 0.07 0.56 6.41 37.16 0.24 0.80 16 27 O -0.55 -4.17 12.15 -54.61 -0.66 -4.83 16 28 C 0.07 0.56 6.44 37.16 0.24 0.80 16 29 O -0.55 -4.17 12.14 -54.61 -0.66 -4.83 16 30 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.34 7.28 -51.93 -0.38 -0.03 16 32 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.13 1.66 8.06 -52.49 -0.42 1.24 16 34 H 0.40 5.19 7.66 -40.82 -0.31 4.87 16 35 H 0.05 0.81 7.94 -51.93 -0.41 0.40 16 36 H 0.06 0.83 7.94 -51.93 -0.41 0.42 16 37 H 0.03 0.51 7.18 -51.93 -0.37 0.14 16 38 H 0.07 1.36 6.95 -51.92 -0.36 1.00 16 39 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 41 H 0.01 0.30 7.57 -51.93 -0.39 -0.09 16 42 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 43 H 0.13 1.53 6.70 -52.48 -0.35 1.18 16 44 H 0.12 1.08 5.93 -52.49 -0.31 0.77 16 45 H 0.11 0.85 6.75 -51.93 -0.35 0.50 16 46 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.05 0.42 6.46 -51.93 -0.34 0.08 16 48 H 0.38 1.33 9.12 45.56 0.42 1.75 16 49 H 0.05 0.42 6.49 -51.93 -0.34 0.09 16 50 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 51 H 0.38 1.34 9.12 45.56 0.42 1.76 16 LS Contribution 404.05 15.07 6.09 6.09 Total: -1.00 -34.58 404.05 -10.00 -44.58 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -6.38 Total: 5.79 kcal Atomic # 6 Polarization: -10.26 SS G_CDS: -3.79 Total: -14.05 kcal Atomic # 7 Polarization: -49.36 SS G_CDS: 0.08 Total: -49.27 kcal Atomic # 8 Polarization: -8.34 SS G_CDS: -1.33 Total: -9.67 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.67 Total: 16.54 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -34.58 -10.00 -44.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894923132.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.878 kcal (2) G-P(sol) polarization free energy of solvation -34.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds