Wall clock time and date at job start Wed Apr 1 2020 05:24:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30130 * 124.94287 * 2 1 4 4 C 1.35796 * 109.66855 * 179.97438 * 3 2 1 5 5 C 1.39753 * 133.48920 * 180.34552 * 4 3 2 6 6 C 1.38189 * 119.70889 * 180.14371 * 5 4 3 7 7 N 1.39928 * 119.81999 * 179.77437 * 6 5 4 8 8 C 1.46494 * 119.99846 * 179.72555 * 7 6 5 9 9 C 1.53004 * 109.47098 * 180.02562 * 8 7 6 10 10 H 1.08999 * 109.46890 * 54.99619 * 9 8 7 11 11 C 1.52999 * 109.46650 * 294.99978 * 9 8 7 12 12 C 1.52998 * 109.47446 * 174.99951 * 9 8 7 13 13 C 1.50700 * 109.46919 * 184.99822 * 12 9 8 14 14 H 1.07992 * 120.00124 * 0.02562 * 13 12 9 15 15 C 1.37878 * 119.99567 * 180.02562 * 13 12 9 16 16 N 1.31512 * 120.00042 * 180.02562 * 15 13 12 17 17 Si 1.86798 * 120.00301 * 0.02562 * 15 13 12 18 18 H 1.48500 * 109.47301 * 89.99849 * 17 15 13 19 19 H 1.48503 * 109.47535 * 210.00000 * 17 15 13 20 20 H 1.48503 * 109.47282 * 330.00240 * 17 15 13 21 21 C 1.39386 * 120.36639 * 359.49793 * 6 5 4 22 22 C 1.37755 * 120.38927 * 0.23136 * 21 6 5 23 23 C 1.38830 * 119.92382 * 0.02562 * 22 21 6 24 24 N 1.35991 * 124.94565 * 179.97438 * 2 1 3 25 25 C 1.46494 * 126.35663 * 0.02562 * 24 2 1 26 26 C 1.53001 * 109.47201 * 120.25276 * 25 24 2 27 27 O 1.42889 * 109.47456 * 185.71609 * 26 25 24 28 28 C 1.53000 * 109.46927 * 240.24933 * 25 24 2 29 29 O 1.42901 * 109.46879 * 175.00220 * 28 25 24 30 30 H 1.09003 * 109.47035 * 95.24071 * 1 2 3 31 31 H 1.09003 * 109.46934 * 215.23589 * 1 2 3 32 32 H 1.09001 * 109.47345 * 335.23843 * 1 2 3 33 33 H 1.08000 * 120.14494 * 359.90002 * 5 4 3 34 34 H 0.96997 * 119.99559 * 359.72382 * 7 6 5 35 35 H 1.08997 * 109.47847 * 60.00063 * 8 7 6 36 36 H 1.09001 * 109.47296 * 299.99605 * 8 7 6 37 37 H 1.09000 * 109.47498 * 60.00360 * 11 9 8 38 38 H 1.09009 * 109.47097 * 179.97438 * 11 9 8 39 39 H 1.09000 * 109.47693 * 299.99561 * 11 9 8 40 40 H 1.09002 * 109.47421 * 305.00138 * 12 9 8 41 41 H 1.09003 * 109.47081 * 65.00243 * 12 9 8 42 42 H 0.97002 * 120.00192 * 180.02562 * 16 15 13 43 43 H 1.08003 * 119.81007 * 180.25543 * 21 6 5 44 44 H 1.08000 * 120.04156 * 180.02562 * 22 21 6 45 45 H 1.08994 * 109.47407 * 0.25640 * 25 24 2 46 46 H 1.09000 * 109.47039 * 305.71900 * 26 25 24 47 47 H 1.09002 * 109.47235 * 65.71246 * 26 25 24 48 48 H 0.96708 * 114.00536 * 180.02562 * 27 26 25 49 49 H 1.08998 * 109.47642 * 295.00074 * 28 25 24 50 50 H 1.08997 * 109.47154 * 55.00860 * 28 25 24 51 51 H 0.96700 * 114.00213 * 180.02562 * 29 28 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2523 1.0667 0.0000 4 6 3.5623 0.7090 0.0006 5 6 4.7572 1.4337 0.0069 6 6 5.9652 0.7626 0.0026 7 7 7.1630 1.4859 0.0041 8 6 8.4458 0.7785 0.0056 9 6 9.5891 1.7954 0.0078 10 1 9.4675 2.4768 0.8498 11 6 9.5667 2.5905 -1.2992 12 6 10.9250 1.0606 0.1350 13 6 12.0410 2.0656 0.2606 14 1 11.8194 3.1225 0.2511 15 6 13.3448 1.6356 0.3877 16 7 14.3187 2.5125 0.4979 17 14 13.7280 -0.1926 0.4034 18 1 13.9711 -0.6594 -0.9852 19 1 14.9392 -0.4375 1.2271 20 1 12.5784 -0.9345 0.9808 21 6 5.9971 -0.6309 0.0024 22 6 4.8251 -1.3548 0.0018 23 6 3.6036 -0.6951 0.0008 24 7 2.2859 -1.1147 0.0005 25 6 1.8163 -2.5023 0.0006 26 6 2.3417 -3.2187 -1.2451 27 8 1.7769 -4.5294 -1.3147 28 6 2.3304 -3.2146 1.2533 29 8 1.7781 -4.5312 1.3131 30 1 -0.3633 -0.0939 -1.0234 31 1 -0.3633 -0.8394 0.5929 32 1 -0.3634 0.9332 0.4304 33 1 4.7366 2.5135 0.0113 34 1 7.1439 2.4557 0.0042 35 1 8.5171 0.1532 -0.8844 36 1 8.5148 0.1530 0.8956 37 1 8.6150 3.1140 -1.3898 38 1 10.3809 3.3153 -1.2975 39 1 9.6883 1.9091 -2.1412 40 1 10.9072 0.4249 1.0202 41 1 11.0875 0.4461 -0.7505 42 1 15.2360 2.2100 0.5869 43 1 6.9463 -1.1462 0.0031 44 1 4.8564 -2.4344 0.0021 45 1 0.7265 -2.5171 -0.0044 46 1 2.0607 -2.6543 -2.1343 47 1 3.4277 -3.2934 -1.1904 48 1 2.0670 -5.0426 -2.0813 49 1 3.4178 -3.2782 1.2147 50 1 2.0304 -2.6543 2.1388 51 1 2.0613 -5.0419 2.0838 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894923132.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:02 Heat of formation + Delta-G solvation = -55.842169 kcal Electronic energy + Delta-G solvation = -30211.794291 eV Core-core repulsion = 26110.526013 eV Total energy + Delta-G solvation = -4101.268278 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.20984 -39.66742 -38.86991 -37.57578 -37.11003 -35.36495 -35.17451 -33.90452 -31.91097 -31.37235 -30.16205 -29.34909 -27.90483 -26.93642 -26.82971 -24.50400 -23.53812 -23.00742 -21.94454 -21.03594 -20.79953 -19.00406 -18.85478 -18.49488 -18.02513 -17.22565 -17.17752 -16.84851 -16.66889 -16.44704 -15.95039 -15.64575 -15.51577 -15.15571 -14.93005 -14.62401 -14.57676 -14.46477 -14.24508 -14.06507 -13.98497 -13.77961 -13.69357 -13.41570 -13.26748 -12.90563 -12.83432 -12.56351 -12.53219 -12.45137 -12.23275 -12.09094 -11.71747 -11.58067 -11.44012 -11.32774 -11.11338 -11.09281 -10.91451 -10.83432 -10.72833 -10.36382 -9.10404 -8.24908 -8.09711 -6.27705 -0.01509 0.71327 1.36472 1.38275 1.40072 1.51342 1.77784 2.39108 2.50702 2.94349 3.06894 3.10722 3.29519 3.31760 3.41625 3.86955 3.91594 3.97437 4.02342 4.06752 4.17975 4.21570 4.29400 4.32308 4.35995 4.40513 4.42055 4.53723 4.59113 4.60552 4.66759 4.76705 4.80622 4.83571 4.92906 5.01386 5.05162 5.12099 5.24813 5.31231 5.37718 5.46656 5.50020 5.56077 5.66515 5.70487 5.75987 6.20399 6.32428 6.46817 6.79939 6.80269 6.82399 6.86141 6.96198 7.35881 8.91682 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015680 B = 0.002060 C = 0.001884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.271898 B =13587.052819 C =14858.310860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.291 3.709 3 N -0.539 5.539 4 C 0.074 3.926 5 C -0.183 4.183 6 C 0.216 3.784 7 N -0.741 5.741 8 C 0.140 3.860 9 C -0.081 4.081 10 H 0.057 0.943 11 C -0.128 4.128 12 C -0.005 4.005 13 C -0.519 4.519 14 H 0.034 0.966 15 C -0.001 4.001 16 N -0.955 5.955 17 Si 0.948 3.052 18 H -0.268 1.268 19 H -0.289 1.289 20 H -0.241 1.241 21 C -0.169 4.169 22 C -0.061 4.061 23 C -0.014 4.014 24 N -0.478 5.478 25 C 0.142 3.858 26 C 0.078 3.922 27 O -0.561 6.561 28 C 0.077 3.923 29 O -0.561 6.561 30 H 0.104 0.896 31 H 0.100 0.900 32 H 0.101 0.899 33 H 0.120 0.880 34 H 0.402 0.598 35 H 0.065 0.935 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.035 0.965 39 H 0.051 0.949 40 H 0.022 0.978 41 H 0.023 0.977 42 H 0.264 0.736 43 H 0.143 0.857 44 H 0.141 0.859 45 H 0.126 0.874 46 H 0.050 0.950 47 H 0.052 0.948 48 H 0.397 0.603 49 H 0.052 0.948 50 H 0.050 0.950 51 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.708 -16.324 -1.847 35.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.026 3.974 3 N -0.262 5.262 4 C -0.043 4.043 5 C -0.210 4.210 6 C 0.110 3.890 7 N -0.371 5.371 8 C 0.015 3.985 9 C -0.100 4.100 10 H 0.075 0.925 11 C -0.186 4.186 12 C -0.043 4.043 13 C -0.557 4.557 14 H 0.053 0.947 15 C -0.197 4.197 16 N -0.596 5.596 17 Si 0.772 3.228 18 H -0.193 1.193 19 H -0.216 1.216 20 H -0.165 1.165 21 C -0.192 4.192 22 C -0.082 4.082 23 C -0.121 4.121 24 N -0.173 5.173 25 C 0.038 3.962 26 C -0.001 4.001 27 O -0.367 6.367 28 C -0.002 4.002 29 O -0.367 6.367 30 H 0.123 0.877 31 H 0.119 0.881 32 H 0.120 0.880 33 H 0.138 0.862 34 H 0.237 0.763 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.054 0.946 39 H 0.070 0.930 40 H 0.041 0.959 41 H 0.041 0.959 42 H 0.073 0.927 43 H 0.160 0.840 44 H 0.159 0.841 45 H 0.143 0.857 46 H 0.068 0.932 47 H 0.070 0.930 48 H 0.247 0.753 49 H 0.070 0.930 50 H 0.069 0.931 51 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -32.217 -15.394 -1.831 35.753 hybrid contribution 1.957 -0.609 0.089 2.052 sum -30.260 -16.003 -1.742 34.276 Atomic orbital electron populations 1.20618 0.81527 1.06012 1.05517 1.24389 0.97130 0.79934 0.95962 1.70426 1.01372 1.28535 1.25852 1.18820 0.91606 0.91002 1.02916 1.19430 0.88337 0.99155 1.14076 1.17527 0.85665 0.91403 0.94376 1.44770 1.02066 1.08267 1.81978 1.21352 0.81416 0.94581 1.01108 1.21067 0.93810 0.96865 0.98240 0.92462 1.21654 1.00439 0.99749 0.96722 1.19523 0.92509 0.95507 0.96743 1.21437 0.91718 0.93777 1.48753 0.94742 1.26028 0.96285 1.02843 0.94564 1.70077 1.00437 1.36420 1.52675 0.85689 0.78338 0.80018 0.78790 1.19345 1.21568 1.16458 1.20720 0.98753 0.91764 1.07965 1.19921 0.88027 0.99663 1.00572 1.18767 0.85927 0.94584 1.12774 1.44995 1.04133 1.06240 1.61885 1.20979 1.01957 0.77390 0.95826 1.22163 0.97141 0.85010 0.95811 1.86516 1.72184 1.25905 1.52143 1.22177 0.97320 0.84918 0.95805 1.86519 1.73315 1.25441 1.51454 0.87739 0.88134 0.87996 0.86177 0.76290 0.91685 0.92151 0.92126 0.94550 0.92985 0.95931 0.95901 0.92749 0.83950 0.84114 0.85656 0.93150 0.92979 0.75278 0.93004 0.93131 0.75283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.77 9.89 71.23 0.70 -0.07 16 2 C 0.29 5.80 7.85 137.93 1.08 6.88 16 3 N -0.54 -14.82 11.27 -180.00 -2.03 -16.85 16 4 C 0.07 2.11 7.22 39.44 0.28 2.40 16 5 C -0.18 -5.16 9.93 22.62 0.22 -4.93 16 6 C 0.22 5.67 6.64 38.11 0.25 5.92 16 7 N -0.74 -19.44 5.47 -339.41 -1.86 -21.30 16 8 C 0.14 3.93 4.29 86.38 0.37 4.30 16 9 C -0.08 -2.88 2.37 -10.79 -0.03 -2.91 16 10 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 11 C -0.13 -4.44 8.88 71.98 0.64 -3.80 16 12 C 0.00 -0.22 3.52 29.85 0.10 -0.11 16 13 C -0.52 -28.91 8.96 25.60 0.23 -28.68 16 14 H 0.03 2.13 7.30 -2.91 -0.02 2.11 16 15 C 0.00 -0.07 5.47 84.66 0.46 0.39 16 16 N -0.95 -59.67 13.96 21.45 0.30 -59.37 16 17 Si 0.95 43.27 27.47 68.60 1.88 45.16 16 18 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 19 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 20 H -0.24 -9.99 6.54 99.48 0.65 -9.34 16 21 C -0.17 -3.90 9.29 22.43 0.21 -3.70 16 22 C -0.06 -1.26 8.96 22.30 0.20 -1.06 16 23 C -0.01 -0.32 6.25 38.81 0.24 -0.08 16 24 N -0.48 -8.88 2.66 -483.17 -1.28 -10.16 16 25 C 0.14 1.96 3.00 44.99 0.13 2.09 16 26 C 0.08 1.01 6.41 71.98 0.46 1.47 16 27 O -0.56 -7.00 12.15 -130.45 -1.58 -8.58 16 28 C 0.08 1.00 6.44 71.98 0.46 1.46 16 29 O -0.56 -7.01 12.14 -130.45 -1.58 -8.59 16 30 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.10 0.56 7.28 -2.39 -0.02 0.54 16 32 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.12 3.32 8.06 -2.91 -0.02 3.30 16 34 H 0.40 10.19 7.66 -92.71 -0.71 9.48 16 35 H 0.06 1.73 7.94 -2.39 -0.02 1.71 16 36 H 0.06 1.66 7.94 -2.39 -0.02 1.64 16 37 H 0.06 1.75 7.18 -2.39 -0.02 1.74 16 38 H 0.04 1.47 6.95 -2.38 -0.02 1.45 16 39 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.02 0.97 7.20 -2.39 -0.02 0.95 16 41 H 0.02 0.96 7.57 -2.39 -0.02 0.95 16 42 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 43 H 0.14 2.92 6.70 -2.91 -0.02 2.90 16 44 H 0.14 2.17 5.93 -2.91 -0.02 2.15 16 45 H 0.13 1.47 6.75 -2.39 -0.02 1.46 16 46 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 47 H 0.05 0.68 6.46 -2.39 -0.02 0.66 16 48 H 0.40 1.74 9.12 -74.05 -0.68 1.07 16 49 H 0.05 0.68 6.49 -2.39 -0.02 0.67 16 50 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 51 H 0.40 1.77 9.12 -74.06 -0.68 1.09 16 Total: -1.00 -76.49 404.05 -1.25 -77.74 By element: Atomic # 1 Polarization: 23.50 SS G_CDS: -1.14 Total: 22.36 kcal Atomic # 6 Polarization: -26.45 SS G_CDS: 6.04 Total: -20.41 kcal Atomic # 7 Polarization: -102.81 SS G_CDS: -4.87 Total: -107.68 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: -3.17 Total: -17.17 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 1.88 Total: 45.16 kcal Total: -76.49 -1.25 -77.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894923132.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.899 kcal (2) G-P(sol) polarization free energy of solvation -76.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds