Wall clock time and date at job start Wed Apr 1 2020 04:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30137 * 126.70361 * 2 1 4 4 O 1.20884 * 111.98296 * 179.85719 * 3 2 1 5 5 C 1.34644 * 111.46992 * 0.42381 * 4 3 2 6 6 C 1.47505 * 126.94643 * 179.76681 * 5 4 3 7 7 O 1.21589 * 120.00230 * 173.20200 * 6 5 4 8 8 N 1.34779 * 119.99774 * 353.20423 * 6 5 4 9 9 C 1.46920 * 120.63478 * 4.07982 * 8 6 5 10 10 C 1.52757 * 109.01143 * 233.58646 * 9 8 6 11 11 C 1.53036 * 109.38352 * 305.58769 * 10 9 8 12 12 C 1.53044 * 109.53934 * 61.24143 * 11 10 9 13 13 H 1.09003 * 109.49530 * 58.58107 * 12 11 10 14 14 C 1.52992 * 109.52243 * 178.66886 * 12 11 10 15 15 H 1.09001 * 110.89260 * 57.42538 * 14 12 11 16 16 C 1.55162 * 111.00300 * 293.49832 * 14 12 11 17 17 C 1.54324 * 102.94154 * 206.42515 * 16 14 12 18 18 N 1.47024 * 107.27248 * 22.19789 * 17 16 14 19 19 C 1.36936 * 125.65026 * 181.09100 * 18 17 16 20 20 H 1.08000 * 120.00190 * 179.97438 * 19 18 17 21 21 C 1.38815 * 119.99775 * 359.95948 * 19 18 17 22 22 N 1.31619 * 120.00120 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99888 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47093 * 89.99943 * 23 21 19 25 25 H 1.48498 * 109.47112 * 209.99914 * 23 21 19 26 26 H 1.48494 * 109.47366 * 330.00113 * 23 21 19 27 27 C 1.47427 * 108.70106 * 1.05492 * 18 17 16 28 28 C 1.46927 * 120.62702 * 184.36483 * 8 6 5 29 29 C 1.36828 * 106.10766 * 359.74752 * 5 4 3 30 30 C 1.50701 * 128.07420 * 180.02562 * 29 5 4 31 31 H 1.08997 * 109.47132 * 269.67787 * 1 2 3 32 32 H 1.09006 * 109.47026 * 149.68332 * 1 2 3 33 33 H 1.08999 * 109.47427 * 29.68846 * 1 2 3 34 34 H 1.09005 * 109.58113 * 353.42337 * 9 8 6 35 35 H 1.08995 * 109.58608 * 113.84217 * 9 8 6 36 36 H 1.09009 * 109.56147 * 185.54918 * 10 9 8 37 37 H 1.09003 * 109.38403 * 65.51822 * 10 9 8 38 38 H 1.09000 * 109.46198 * 301.21941 * 11 10 9 39 39 H 1.09002 * 109.44592 * 181.25240 * 11 10 9 40 40 H 1.08996 * 110.72547 * 324.79360 * 16 14 12 41 41 H 1.09004 * 110.71490 * 88.06748 * 16 14 12 42 42 H 1.08994 * 109.88743 * 262.77578 * 17 16 14 43 43 H 1.08997 * 110.00968 * 141.68770 * 17 16 14 44 44 H 0.96996 * 119.99859 * 179.97438 * 22 21 19 45 45 H 1.08990 * 110.36642 * 217.03268 * 27 18 17 46 46 H 1.09002 * 110.45507 * 94.75648 * 27 18 17 47 47 H 1.09003 * 109.58859 * 246.15230 * 28 8 6 48 48 H 1.09001 * 109.59301 * 6.44040 * 28 8 6 49 49 H 1.09003 * 109.47261 * 269.98673 * 30 29 5 50 50 H 1.09003 * 109.47317 * 29.98059 * 30 29 5 51 51 H 1.08994 * 109.47198 * 149.97846 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2847 1.0434 0.0000 4 8 3.4539 0.7362 0.0028 5 6 3.6122 -0.6009 -0.0042 6 6 4.8871 -1.3428 -0.0082 7 8 4.8867 -2.5529 0.1101 8 7 6.0524 -0.6792 -0.1431 9 6 6.0761 0.7888 -0.1975 10 6 6.8270 1.2282 -1.4531 11 6 8.2112 0.5758 -1.4715 12 6 8.0592 -0.9467 -1.5055 13 1 7.4877 -1.2356 -2.3876 14 6 9.4427 -1.5976 -1.5573 15 1 10.0499 -1.2884 -0.7066 16 6 10.1575 -1.2787 -2.8970 17 6 11.1149 -2.4764 -3.0717 18 7 10.5792 -3.5843 -2.2672 19 6 11.1485 -4.8227 -2.1350 20 1 10.6749 -5.5716 -1.5176 21 6 12.3341 -5.1156 -2.7949 22 7 12.9108 -4.2031 -3.5480 23 14 13.1111 -6.8046 -2.6140 24 1 12.5891 -7.7056 -3.6727 25 1 14.5856 -6.6879 -2.7461 26 1 12.7763 -7.3632 -1.2794 27 6 9.3280 -3.1409 -1.6258 28 6 7.3227 -1.4105 -0.2448 29 6 2.3513 -1.1324 -0.0063 30 6 1.9558 -2.5866 -0.0130 31 1 -0.3633 -0.0058 1.0276 32 1 -0.3633 -0.8872 -0.5188 33 1 -0.3634 0.8927 -0.5090 34 1 5.0553 1.1696 -0.2318 35 1 6.5844 1.1789 0.6842 36 1 6.9358 2.3128 -1.4525 37 1 6.2674 0.9192 -2.3360 38 1 8.7613 0.8659 -0.5763 39 1 8.7563 0.9062 -2.3557 40 1 9.4400 -1.2358 -3.7164 41 1 10.7165 -0.3458 -2.8233 42 1 12.1109 -2.2096 -2.7184 43 1 11.1598 -2.7681 -4.1209 44 1 13.7395 -4.4077 -4.0088 45 1 9.2465 -3.5601 -0.6231 46 1 8.4673 -3.4310 -2.2286 47 1 7.9349 -1.2033 0.6330 48 1 7.1245 -2.4804 -0.3078 49 1 1.8599 -2.9323 -1.0423 50 1 2.7195 -3.1733 0.4975 51 1 1.0021 -2.7061 0.5009 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961196721.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:00 Heat of formation + Delta-G solvation = 50.169422 kcal Electronic energy + Delta-G solvation = -31382.483020 eV Core-core repulsion = 27285.811749 eV Total energy + Delta-G solvation = -4096.671271 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -45.34608 -40.40240 -38.41345 -36.88375 -35.73762 -33.83906 -32.89816 -32.33326 -31.14766 -29.41922 -29.00787 -28.55758 -27.09085 -25.93447 -24.60859 -23.16400 -22.79783 -22.10489 -20.84201 -19.87812 -19.60708 -19.51264 -18.16103 -17.64760 -16.83794 -16.58897 -16.20145 -15.49568 -14.90827 -14.63814 -14.46047 -14.22559 -14.05478 -13.95561 -13.82109 -13.68900 -13.49866 -13.41765 -13.19931 -13.02549 -12.94043 -12.70852 -12.35502 -12.08213 -11.96599 -11.77606 -11.43874 -11.21073 -11.01433 -10.96775 -10.81662 -10.70006 -10.60656 -10.40561 -10.26024 -10.06778 -9.97711 -9.78349 -9.75953 -9.72682 -9.53545 -8.80861 -8.54649 -6.76445 -5.65871 -2.98654 0.51145 1.69099 2.25583 2.71635 2.88282 3.43601 3.48523 3.50400 3.66195 3.97051 4.32154 4.48952 4.54115 4.65290 4.76318 4.81492 4.82008 4.93845 5.03663 5.14111 5.15521 5.21804 5.32749 5.38390 5.43697 5.50101 5.51159 5.54070 5.62570 5.66119 5.69147 5.74360 5.76134 5.86596 5.94224 5.95764 6.01798 6.06905 6.25044 6.26473 6.39282 6.46994 6.60407 6.63367 6.78666 7.01846 7.04193 7.62387 7.64317 7.69182 7.86847 7.88571 8.32317 9.28342 9.88899 10.55452 11.45948 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018831 B = 0.002332 C = 0.002129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.562920 B =12002.083653 C =13147.231365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.013 3.987 3 N -0.350 5.350 4 O 0.112 5.888 5 C -0.087 4.087 6 C 0.602 3.398 7 O -0.509 6.509 8 N -0.595 5.595 9 C 0.092 3.908 10 C -0.133 4.133 11 C -0.115 4.115 12 C -0.087 4.087 13 H 0.075 0.925 14 C -0.095 4.095 15 H 0.075 0.925 16 C -0.135 4.135 17 C 0.177 3.823 18 N -0.607 5.607 19 C -0.225 4.225 20 H 0.077 0.923 21 C -0.011 4.011 22 N -0.923 5.923 23 Si 0.911 3.089 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.281 1.281 27 C 0.140 3.860 28 C 0.116 3.884 29 C -0.117 4.117 30 C -0.088 4.088 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.100 0.900 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.072 0.928 40 H 0.055 0.945 41 H 0.057 0.943 42 H 0.044 0.956 43 H 0.040 0.960 44 H 0.251 0.749 45 H 0.037 0.963 46 H 0.018 0.982 47 H 0.074 0.926 48 H 0.100 0.900 49 H 0.080 0.920 50 H 0.093 0.907 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.385 13.700 7.389 27.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.145 4.145 3 N -0.055 5.055 4 O 0.044 5.956 5 C -0.152 4.152 6 C 0.387 3.613 7 O -0.384 6.384 8 N -0.327 5.327 9 C -0.031 4.031 10 C -0.172 4.172 11 C -0.153 4.153 12 C -0.107 4.107 13 H 0.093 0.907 14 C -0.115 4.115 15 H 0.094 0.906 16 C -0.174 4.174 17 C 0.052 3.948 18 N -0.333 5.333 19 C -0.353 4.353 20 H 0.095 0.905 21 C -0.207 4.207 22 N -0.571 5.571 23 Si 0.742 3.258 24 H -0.217 1.217 25 H -0.217 1.217 26 H -0.207 1.207 27 C 0.014 3.986 28 C -0.005 4.005 29 C -0.122 4.122 30 C -0.145 4.145 31 H 0.101 0.899 32 H 0.103 0.897 33 H 0.098 0.902 34 H 0.118 0.882 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.062 0.938 43 H 0.058 0.942 44 H 0.061 0.939 45 H 0.055 0.945 46 H 0.035 0.965 47 H 0.092 0.908 48 H 0.118 0.882 49 H 0.099 0.901 50 H 0.112 0.888 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -22.389 14.223 7.388 27.534 hybrid contribution 0.486 -1.415 -0.047 1.497 sum -21.902 12.808 7.341 26.413 Atomic orbital electron populations 1.20204 0.85338 1.04113 1.03643 1.23498 0.99183 0.88063 1.03796 1.73694 0.89949 1.24628 1.17211 1.85031 1.20628 1.22049 1.67897 1.24020 0.97022 0.83719 1.10456 1.16643 0.80835 0.86024 0.77791 1.90860 1.85354 1.12120 1.50111 1.48061 1.06423 1.07642 1.70577 1.22187 1.02734 0.78880 0.99271 1.21846 0.96951 1.00773 0.97595 1.21602 0.96018 0.94801 1.02865 1.21491 0.96593 0.95029 0.97555 0.90706 1.22319 0.93520 0.96839 0.98788 0.90646 1.22884 0.99055 0.99738 0.95711 1.21133 0.93875 0.84038 0.95753 1.44486 1.22889 1.11206 1.54699 1.19076 1.03620 0.88220 1.24415 0.90492 1.24800 0.97961 0.98099 0.99815 1.69972 1.19884 1.32472 1.34806 0.86125 0.78443 0.83590 0.77669 1.21669 1.21744 1.20707 1.21587 0.90065 0.91027 0.95961 1.21912 0.82061 0.98082 0.98434 1.21501 0.90265 0.98633 1.01798 1.20368 1.02767 0.87853 1.03539 0.89908 0.89717 0.90225 0.88240 0.90518 0.90412 0.91499 0.91619 0.90957 0.92672 0.92387 0.93765 0.94159 0.93870 0.94491 0.96484 0.90751 0.88156 0.90109 0.88816 0.90753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.43 10.39 36.00 0.37 -0.06 16 2 C 0.01 0.12 7.31 -82.17 -0.60 -0.48 16 3 N -0.35 -3.87 12.04 33.52 0.40 -3.47 16 4 O 0.11 1.22 7.76 15.55 0.12 1.34 16 5 C -0.09 -1.01 6.99 -36.32 -0.25 -1.26 16 6 C 0.60 7.86 7.69 -12.48 -0.10 7.76 16 7 O -0.51 -7.93 14.52 5.29 0.08 -7.86 16 8 N -0.60 -6.96 2.98 -174.27 -0.52 -7.48 16 9 C 0.09 0.84 6.30 -3.94 -0.02 0.82 16 10 C -0.13 -1.18 6.06 -26.84 -0.16 -1.34 16 11 C -0.12 -1.20 5.04 -26.69 -0.13 -1.34 16 12 C -0.09 -1.13 1.84 -90.50 -0.17 -1.30 16 13 H 0.07 1.06 8.11 -51.93 -0.42 0.64 16 14 C -0.09 -1.56 2.57 -88.47 -0.23 -1.79 16 15 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 16 C -0.14 -2.46 5.58 -24.89 -0.14 -2.59 16 17 C 0.18 4.32 5.38 -3.06 -0.02 4.31 16 18 N -0.61 -15.75 3.39 -170.07 -0.58 -16.33 16 19 C -0.22 -6.40 10.28 -15.06 -0.15 -6.56 16 20 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 21 C -0.01 -0.31 5.49 -17.43 -0.10 -0.41 16 22 N -0.92 -27.56 10.31 55.49 0.57 -26.99 16 23 Si 0.91 22.52 29.55 -169.99 -5.02 17.49 16 24 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 25 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 26 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 27 C 0.14 2.89 5.75 -2.53 -0.01 2.88 16 28 C 0.12 1.48 5.40 -3.71 -0.02 1.46 16 29 C -0.12 -1.21 6.36 -103.99 -0.66 -1.88 16 30 C -0.09 -0.75 9.93 36.01 0.36 -0.40 16 31 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.10 0.90 3.83 -54.68 -0.21 0.69 16 35 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.08 0.55 8.14 -51.92 -0.42 0.13 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.77 7.46 -51.93 -0.39 0.39 16 40 H 0.05 0.96 8.01 -51.93 -0.42 0.54 16 41 H 0.06 0.94 8.12 -51.93 -0.42 0.52 16 42 H 0.04 1.19 7.38 -51.93 -0.38 0.81 16 43 H 0.04 1.10 7.50 -51.93 -0.39 0.71 16 44 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 45 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.02 0.37 8.03 -51.93 -0.42 -0.05 16 47 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 48 H 0.10 1.48 6.45 -51.93 -0.33 1.15 16 49 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 50 H 0.09 0.96 6.63 -51.93 -0.34 0.62 16 51 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 LS Contribution 395.57 15.07 5.96 5.96 Total: -1.00 -32.94 395.57 -9.37 -42.30 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -8.34 Total: -2.81 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: -2.04 Total: -2.17 kcal Atomic # 7 Polarization: -54.15 SS G_CDS: -0.12 Total: -54.27 kcal Atomic # 8 Polarization: -6.71 SS G_CDS: 0.20 Total: -6.51 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.94 -9.37 -42.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961196721.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.473 kcal (2) G-P(sol) polarization free energy of solvation -32.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds