Wall clock time and date at job start Wed Apr 1 2020 04:48:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30131 * 126.70215 * 2 1 4 4 O 1.20892 * 111.97814 * 180.02562 * 3 2 1 5 5 C 1.34644 * 111.46995 * 0.02562 * 4 3 2 6 6 C 1.47511 * 126.94185 * 179.97438 * 5 4 3 7 7 O 1.21585 * 119.99763 * 186.59013 * 6 5 4 8 8 N 1.34772 * 120.00119 * 6.59205 * 6 5 4 9 9 C 1.43445 * 120.53396 * 356.08370 * 8 6 5 10 10 C 1.54902 * 116.07821 * 271.59376 * 9 8 6 11 11 C 1.54860 * 110.17258 * 318.64416 * 10 9 8 12 12 C 1.50007 * 110.86549 * 321.07096 * 11 10 9 13 13 C 1.52632 * 105.45182 * 97.58593 * 12 11 10 14 14 C 1.55455 * 108.23462 * 35.89909 * 13 12 11 15 15 C 1.54265 * 102.94840 * 149.87601 * 14 13 12 16 16 N 1.47002 * 107.26812 * 337.62434 * 15 14 13 17 17 C 1.36933 * 125.65621 * 178.90184 * 16 15 14 18 18 H 1.07993 * 120.00142 * 179.97438 * 17 16 15 19 19 C 1.38816 * 119.99885 * 359.97180 * 17 16 15 20 20 N 1.31627 * 119.99959 * 0.02562 * 19 17 16 21 21 Si 1.86790 * 120.00180 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47436 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47568 * 119.99533 * 21 19 17 24 24 H 1.48505 * 109.47174 * 239.99923 * 21 19 17 25 25 C 1.47397 * 108.69188 * 358.87565 * 16 15 14 26 26 C 1.46362 * 114.38557 * 270.81044 * 13 12 11 27 27 C 1.36824 * 106.10815 * 0.22641 * 5 4 3 28 28 C 1.50706 * 128.07027 * 179.77287 * 27 5 4 29 29 H 1.08997 * 109.46850 * 89.97320 * 1 2 3 30 30 H 1.08992 * 109.47278 * 209.97765 * 1 2 3 31 31 H 1.09002 * 109.47168 * 329.97541 * 1 2 3 32 32 H 1.08996 * 108.16270 * 33.31159 * 9 8 6 33 33 H 1.09001 * 108.16018 * 149.88257 * 9 8 6 34 34 H 1.09008 * 109.35141 * 78.85758 * 10 9 8 35 35 H 1.08998 * 109.36008 * 198.42547 * 10 9 8 36 36 H 1.08992 * 109.19478 * 81.42885 * 11 10 9 37 37 H 1.09000 * 109.19353 * 200.76419 * 11 10 9 38 38 H 1.09003 * 110.24469 * 338.60091 * 12 11 10 39 39 H 1.09002 * 110.24505 * 216.56424 * 12 11 10 40 40 H 1.08997 * 110.71819 * 31.51186 * 14 13 12 41 41 H 1.09002 * 110.72007 * 268.24588 * 14 13 12 42 42 H 1.09001 * 109.88292 * 218.20860 * 15 14 13 43 43 H 1.09005 * 109.88158 * 97.04037 * 15 14 13 44 44 H 0.96990 * 120.00181 * 180.02562 * 20 19 17 45 45 H 1.09001 * 110.36597 * 143.27489 * 25 16 15 46 46 H 1.09005 * 110.36688 * 265.59116 * 25 16 15 47 47 H 1.09005 * 109.83654 * 177.77509 * 26 13 12 48 48 H 1.08997 * 109.83691 * 298.73946 * 26 13 12 49 49 H 1.09004 * 109.47182 * 89.99996 * 28 27 5 50 50 H 1.09004 * 109.46486 * 209.99657 * 28 27 5 51 51 H 1.08989 * 109.47211 * 329.99636 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2847 1.0433 0.0000 4 8 3.4540 0.7361 -0.0005 5 6 3.6121 -0.6011 -0.0015 6 6 4.8871 -1.3430 -0.0028 7 8 4.8863 -2.5527 -0.1245 8 7 6.0528 -0.6799 0.1308 9 6 6.0733 0.7531 0.1911 10 6 6.1710 1.4905 -1.1677 11 6 7.1794 0.7691 -2.0955 12 6 8.3660 0.2811 -1.3181 13 6 8.0835 -1.1901 -1.0259 14 6 7.3435 -1.7961 -2.2513 15 6 7.7925 -3.2718 -2.2311 16 7 9.0567 -3.3331 -1.4834 17 6 9.7739 -4.4695 -1.2200 18 1 10.6954 -4.4087 -0.6601 19 6 9.3165 -5.6995 -1.6725 20 7 8.1936 -5.7734 -2.3553 21 14 10.2945 -7.2497 -1.3126 22 1 11.5100 -6.8988 -0.5349 23 1 9.4579 -8.1914 -0.5261 24 1 10.6936 -7.8912 -2.5911 25 6 9.4246 -1.9686 -1.0649 26 6 7.3507 -1.4291 0.2183 27 6 2.3513 -1.1325 -0.0067 28 6 1.9558 -2.5867 -0.0146 29 1 -0.3633 0.0005 -1.0276 30 1 -0.3633 -0.8901 0.5134 31 1 -0.3633 0.8898 0.5142 32 1 5.1646 1.0851 0.6931 33 1 6.9229 1.0553 0.8034 34 1 5.1898 1.5048 -1.6423 35 1 6.5035 2.5149 -0.9998 36 1 6.6869 -0.0802 -2.5686 37 1 7.5170 1.4625 -2.8658 38 1 8.4620 0.8391 -0.3866 39 1 9.2736 0.3798 -1.9137 40 1 7.6612 -1.3090 -3.1732 41 1 6.2634 -1.7198 -2.1260 42 1 7.9470 -3.6263 -3.2502 43 1 7.0381 -3.8821 -1.7345 44 1 7.8738 -6.6329 -2.6712 45 1 9.8823 -1.9856 -0.0758 46 1 10.1032 -1.5193 -1.7900 47 1 7.1554 -2.4953 0.3336 48 1 7.9316 -1.0649 1.0656 49 1 1.8582 -2.9422 1.0112 50 1 1.0027 -2.7011 -0.5310 51 1 2.7202 -3.1683 -0.5296 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045946621.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:17 Heat of formation + Delta-G solvation = 75.098565 kcal Electronic energy + Delta-G solvation = -33252.977878 eV Core-core repulsion = 29157.387616 eV Total energy + Delta-G solvation = -4095.590262 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -45.10081 -40.73533 -38.47257 -36.29192 -35.43364 -33.77467 -32.89133 -32.45794 -30.45568 -29.11808 -28.75747 -28.42382 -27.06896 -26.02264 -24.66539 -23.71209 -22.81938 -21.89779 -21.03267 -19.91834 -19.18040 -18.35096 -17.94096 -17.18545 -16.70953 -16.27692 -15.81309 -15.57091 -15.08626 -14.40806 -14.29506 -14.15428 -13.83506 -13.77811 -13.67114 -13.63492 -13.18916 -13.11669 -13.00126 -12.76092 -12.58440 -12.50544 -12.34298 -12.11056 -11.77691 -11.57442 -11.38685 -11.18478 -10.98410 -10.85157 -10.78953 -10.42215 -10.26017 -10.10046 -9.96193 -9.93979 -9.80285 -9.65948 -9.57245 -9.50756 -9.45556 -8.57901 -8.48932 -6.72416 -5.60947 -2.94937 0.77774 1.89880 2.54198 3.06885 3.14324 3.45059 3.50058 3.52816 3.89141 4.24015 4.57043 4.58928 4.75782 4.85704 4.92469 4.97660 5.05166 5.19050 5.19121 5.23037 5.35137 5.40078 5.43721 5.48483 5.55723 5.60970 5.68275 5.69956 5.76220 5.79548 5.86529 5.89576 5.94179 6.14578 6.17442 6.19246 6.23605 6.27291 6.35215 6.41837 6.52045 6.61183 6.67022 6.69726 6.85692 6.96023 7.41793 7.67014 7.79141 7.92435 7.98607 8.14882 8.36990 9.31546 9.92337 10.58791 11.49782 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013904 B = 0.003614 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.390397 B = 7746.074803 C = 9217.697397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.009 3.991 3 N -0.354 5.354 4 O 0.117 5.883 5 C -0.083 4.083 6 C 0.597 3.403 7 O -0.490 6.490 8 N -0.590 5.590 9 C 0.101 3.899 10 C -0.130 4.130 11 C -0.143 4.143 12 C -0.103 4.103 13 C -0.098 4.098 14 C -0.127 4.127 15 C 0.178 3.822 16 N -0.605 5.605 17 C -0.229 4.229 18 H 0.076 0.924 19 C -0.007 4.007 20 N -0.916 5.916 21 Si 0.908 3.092 22 H -0.281 1.281 23 H -0.291 1.291 24 H -0.292 1.292 25 C 0.149 3.851 26 C 0.147 3.853 27 C -0.122 4.122 28 C -0.088 4.088 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.059 0.941 35 H 0.071 0.929 36 H 0.089 0.911 37 H 0.052 0.948 38 H 0.062 0.938 39 H 0.068 0.932 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.036 0.964 43 H 0.052 0.948 44 H 0.250 0.750 45 H 0.037 0.963 46 H 0.022 0.978 47 H 0.111 0.889 48 H 0.074 0.926 49 H 0.078 0.922 50 H 0.072 0.928 51 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.911 16.039 5.285 20.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.149 4.149 3 N -0.057 5.057 4 O 0.046 5.954 5 C -0.148 4.148 6 C 0.382 3.618 7 O -0.364 6.364 8 N -0.322 5.322 9 C -0.024 4.024 10 C -0.169 4.169 11 C -0.180 4.180 12 C -0.141 4.141 13 C -0.100 4.100 14 C -0.165 4.165 15 C 0.053 3.947 16 N -0.331 5.331 17 C -0.357 4.357 18 H 0.094 0.906 19 C -0.203 4.203 20 N -0.564 5.564 21 Si 0.739 3.261 22 H -0.206 1.206 23 H -0.218 1.218 24 H -0.219 1.219 25 C 0.021 3.979 26 C 0.028 3.972 27 C -0.126 4.126 28 C -0.145 4.145 29 H 0.100 0.900 30 H 0.102 0.898 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.078 0.922 35 H 0.090 0.910 36 H 0.107 0.893 37 H 0.071 0.929 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.054 0.946 43 H 0.070 0.930 44 H 0.061 0.939 45 H 0.055 0.945 46 H 0.040 0.960 47 H 0.129 0.871 48 H 0.092 0.908 49 H 0.097 0.903 50 H 0.091 0.909 51 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -12.147 16.432 5.189 21.083 hybrid contribution 0.439 -1.318 0.006 1.389 sum -11.708 15.115 5.196 19.812 Atomic orbital electron populations 1.20175 0.85535 1.03891 1.03547 1.23470 0.99095 0.88218 1.04096 1.73672 0.89911 1.24566 1.17597 1.85126 1.20659 1.22180 1.67385 1.24167 0.97237 0.83593 1.09801 1.16663 0.80851 0.86249 0.78053 1.90946 1.85154 1.11889 1.48396 1.47966 1.06548 1.06693 1.70987 1.21337 1.03055 0.80162 0.97880 1.22623 0.99838 0.98803 0.95638 1.21988 0.96508 1.01325 0.98173 1.21115 0.97940 0.94968 1.00095 1.20966 0.97943 0.94992 0.96073 1.23081 0.98565 0.99049 0.95816 1.21157 0.87877 0.89321 0.96333 1.44502 1.24231 1.00868 1.63478 1.19061 1.03148 0.84015 1.29506 0.90566 1.24790 0.97553 0.97506 1.00482 1.69999 1.21469 1.23410 1.41473 0.86103 0.78968 0.83676 0.77343 1.20608 1.21830 1.21918 1.21732 0.92250 0.86617 0.97264 1.20952 0.80558 0.99054 0.96657 1.21488 0.90320 0.98577 1.02260 1.20361 1.02850 0.87958 1.03337 0.90016 0.89820 0.90413 0.90637 0.90406 0.92173 0.91002 0.89252 0.92882 0.91935 0.91352 0.92393 0.92337 0.94588 0.93001 0.93932 0.94498 0.96002 0.87112 0.90751 0.90345 0.90927 0.88549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.56 10.39 36.01 0.37 -0.18 16 2 C 0.01 0.11 7.31 -82.17 -0.60 -0.49 16 3 N -0.35 -4.60 12.04 33.52 0.40 -4.20 16 4 O 0.12 1.52 7.22 15.54 0.11 1.64 16 5 C -0.08 -1.16 6.88 -36.32 -0.25 -1.41 16 6 C 0.60 9.55 6.60 -12.48 -0.08 9.47 16 7 O -0.49 -9.55 14.26 5.29 0.08 -9.47 16 8 N -0.59 -8.39 2.15 -176.74 -0.38 -8.77 16 9 C 0.10 1.13 4.45 -4.66 -0.02 1.11 16 10 C -0.13 -1.40 6.29 -24.75 -0.16 -1.55 16 11 C -0.14 -1.77 5.16 -27.24 -0.14 -1.91 16 12 C -0.10 -1.34 5.01 -28.41 -0.14 -1.49 16 13 C -0.10 -1.61 0.50 -155.43 -0.08 -1.69 16 14 C -0.13 -2.43 3.91 -24.76 -0.10 -2.53 16 15 C 0.18 4.42 4.97 -3.11 -0.02 4.41 16 16 N -0.60 -15.32 3.38 -170.01 -0.57 -15.90 16 17 C -0.23 -6.40 10.28 -15.06 -0.15 -6.55 16 18 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 19 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 20 N -0.92 -27.55 10.31 55.49 0.57 -26.98 16 21 Si 0.91 22.47 29.55 -169.99 -5.02 17.44 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 23 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 24 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 25 C 0.15 2.96 6.10 -2.43 -0.01 2.94 16 26 C 0.15 2.36 4.74 -5.18 -0.02 2.33 16 27 C -0.12 -1.56 6.36 -103.98 -0.66 -2.22 16 28 C -0.09 -1.00 9.92 36.01 0.36 -0.64 16 29 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.08 0.83 5.12 -51.93 -0.27 0.56 16 33 H 0.08 0.75 6.90 -51.93 -0.36 0.40 16 34 H 0.06 0.69 7.41 -51.92 -0.38 0.30 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.09 1.31 3.99 -51.93 -0.21 1.11 16 37 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.70 6.31 -51.93 -0.33 0.38 16 39 H 0.07 0.90 7.36 -51.93 -0.38 0.52 16 40 H 0.06 1.06 6.91 -51.93 -0.36 0.70 16 41 H 0.06 1.13 5.55 -51.93 -0.29 0.84 16 42 H 0.04 1.01 7.51 -51.93 -0.39 0.62 16 43 H 0.05 1.48 7.38 -51.93 -0.38 1.10 16 44 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 45 H 0.04 0.71 8.05 -51.93 -0.42 0.29 16 46 H 0.02 0.44 7.44 -51.93 -0.39 0.05 16 47 H 0.11 2.24 6.79 -51.93 -0.35 1.89 16 48 H 0.07 1.02 8.12 -51.93 -0.42 0.60 16 49 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 50 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 51 H 0.10 1.34 6.63 -51.94 -0.34 1.00 16 LS Contribution 379.21 15.07 5.71 5.71 Total: -1.00 -32.33 379.21 -8.68 -41.01 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -7.77 Total: 0.22 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: -1.80 Total: -0.70 kcal Atomic # 7 Polarization: -55.87 SS G_CDS: 0.02 Total: -55.85 kcal Atomic # 8 Polarization: -8.02 SS G_CDS: 0.19 Total: -7.83 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.33 -8.68 -41.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045946621.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.110 kcal (2) G-P(sol) polarization free energy of solvation -32.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds