Wall clock time and date at job start Wed Apr 1 2020 05:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50704 * 109.46994 * 2 1 4 4 C 1.38627 * 120.75283 * 269.97831 * 3 2 1 5 5 C 1.38562 * 119.35138 * 180.02562 * 4 3 2 6 6 N 1.31527 * 120.90118 * 359.73941 * 5 4 3 7 7 C 1.32712 * 121.64335 * 0.52864 * 6 5 4 8 8 C 1.48164 * 119.72398 * 179.74921 * 7 6 5 9 9 O 1.21517 * 120.00260 * 186.39698 * 8 7 6 10 10 N 1.34782 * 119.99712 * 6.40140 * 8 7 6 11 11 C 1.46494 * 120.00212 * 356.72503 * 10 8 7 12 12 C 1.50697 * 109.47490 * 277.24036 * 11 10 8 13 13 H 1.08005 * 119.99769 * 359.97438 * 12 11 10 14 14 C 1.37875 * 120.00229 * 180.02562 * 12 11 10 15 15 N 1.31510 * 120.00227 * 179.97438 * 14 12 11 16 16 Si 1.86806 * 119.99947 * 359.97438 * 14 12 11 17 17 H 1.48502 * 109.46994 * 90.00031 * 16 14 12 18 18 H 1.48499 * 109.47316 * 210.00566 * 16 14 12 19 19 H 1.48504 * 109.46878 * 330.00523 * 16 14 12 20 20 C 1.46496 * 119.99585 * 176.73129 * 10 8 7 21 21 C 1.53003 * 109.47459 * 89.99921 * 20 10 8 22 22 N 1.46902 * 109.47539 * 179.97438 * 21 20 10 23 23 C 1.47007 * 110.99920 * 293.63552 * 22 21 20 24 24 C 1.53098 * 109.25701 * 177.60555 * 23 22 21 25 25 O 1.43006 * 109.25873 * 56.84963 * 24 23 22 26 26 C 1.43013 * 113.73938 * 301.32907 * 25 24 23 27 27 C 1.47012 * 110.99995 * 170.00040 * 22 21 20 28 28 C 1.38590 * 120.75667 * 89.99608 * 3 2 1 29 29 H 1.08988 * 109.47345 * 60.00279 * 1 2 3 30 30 H 1.09003 * 109.46531 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47121 * 299.99957 * 1 2 3 32 32 H 1.08994 * 109.47552 * 239.99643 * 2 1 3 33 33 H 1.09001 * 109.47372 * 119.99378 * 2 1 3 34 34 H 1.08004 * 120.32272 * 359.97438 * 4 3 2 35 35 H 1.07997 * 119.54713 * 180.02562 * 5 4 3 36 36 H 1.09008 * 109.46588 * 37.23990 * 11 10 8 37 37 H 1.08996 * 109.47131 * 157.23398 * 11 10 8 38 38 H 0.97001 * 120.00329 * 179.97438 * 15 14 12 39 39 H 1.09001 * 109.47664 * 329.99528 * 20 10 8 40 40 H 1.09001 * 109.47214 * 209.99592 * 20 10 8 41 41 H 1.09001 * 109.47003 * 59.99203 * 21 20 10 42 42 H 1.09005 * 109.47091 * 299.99937 * 21 20 10 43 43 H 1.09000 * 109.51201 * 297.53965 * 23 22 21 44 44 H 1.09007 * 109.50804 * 57.66936 * 23 22 21 45 45 H 1.08997 * 109.50971 * 296.91160 * 24 23 22 46 46 H 1.09010 * 109.54071 * 176.80490 * 24 23 22 47 47 H 1.09001 * 109.50977 * 298.73644 * 26 25 24 48 48 H 1.08997 * 109.54778 * 178.62794 * 26 25 24 49 49 H 1.09000 * 109.50743 * 302.32642 * 27 22 21 50 50 H 1.08997 * 109.50573 * 62.41457 * 27 22 21 51 51 H 1.07993 * 120.46865 * 359.96119 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2690 2.0890 -1.1913 5 6 2.7312 3.3948 -1.1574 6 7 2.9423 4.0072 -0.0127 7 6 2.7332 3.4018 1.1496 8 6 2.9903 4.1301 2.4140 9 8 2.9131 3.5473 3.4775 10 7 3.3098 5.4392 2.3846 11 6 3.4732 6.1247 1.1003 12 6 4.8609 5.8731 0.5695 13 1 5.5523 5.2639 1.1328 14 6 5.2484 6.4215 -0.6347 15 7 6.4597 6.2024 -1.0976 16 14 4.0529 7.4758 -1.6087 17 1 4.1977 8.8958 -1.1987 18 1 4.3466 7.3467 -3.0586 19 1 2.6637 7.0232 -1.3428 20 6 3.4937 6.1766 3.6370 21 6 4.9591 6.0912 4.0687 22 7 5.1437 6.8311 5.3243 23 6 4.9284 8.2714 5.1236 24 6 5.0714 8.9951 6.4651 25 8 6.3592 8.7122 7.0188 26 6 6.6024 7.3185 7.2281 27 6 6.4749 6.5778 5.8943 28 6 2.2685 2.0891 1.1910 29 1 -0.3633 0.5137 -0.8899 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5137 0.8900 34 1 2.0956 1.5963 -2.1366 35 1 2.9163 3.9185 -2.0837 36 1 2.7382 5.7455 0.3901 37 1 3.3257 7.1957 1.2387 38 1 6.7322 6.5879 -1.9450 39 1 2.8611 5.7419 4.4110 40 1 3.2193 7.2208 3.4876 41 1 5.5917 6.5259 3.2948 42 1 5.2336 5.0469 4.2182 43 1 5.6687 8.6559 4.4220 44 1 3.9276 8.4378 4.7251 45 1 4.2969 8.6492 7.1497 46 1 4.9689 10.0696 6.3125 47 1 5.8724 6.9237 7.9348 48 1 7.6071 7.1794 7.6270 49 1 6.6030 5.5079 6.0584 50 1 7.2399 6.9344 5.2046 51 1 2.0946 1.5992 2.1376 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000180129658.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:30:13 Heat of formation + Delta-G solvation = -17.501910 kcal Electronic energy + Delta-G solvation = -31566.466550 eV Core-core repulsion = 27466.860830 eV Total energy + Delta-G solvation = -4099.605720 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.31981 -39.46679 -38.50664 -36.07908 -35.17146 -34.49048 -32.40146 -31.24579 -31.05985 -30.27258 -29.52742 -27.71757 -26.16507 -24.50513 -23.95294 -23.72671 -22.42612 -21.92492 -21.34734 -20.20319 -18.80269 -16.97601 -16.74250 -16.37168 -16.33593 -16.06973 -15.71674 -15.24611 -15.05279 -14.98121 -14.78471 -14.61514 -14.26427 -14.00592 -13.73647 -13.64941 -13.52053 -13.21755 -13.06257 -12.75598 -12.38500 -12.23892 -12.19385 -11.98328 -11.87212 -11.72185 -11.32919 -11.31238 -11.23226 -11.09293 -10.95103 -10.71702 -10.60051 -10.23689 -10.12769 -9.64428 -9.62290 -9.42991 -9.23726 -8.78702 -8.61795 -8.32624 -8.19218 -7.70444 -6.05405 -3.98752 1.12609 1.60381 3.24381 3.28184 3.33430 3.36892 3.58131 3.87026 4.14358 4.35434 4.41196 4.67641 4.77757 4.86176 4.94589 5.09347 5.10135 5.21443 5.22247 5.26252 5.29273 5.31757 5.34570 5.41148 5.46384 5.49682 5.59469 5.64622 5.71148 5.75754 5.77478 5.88950 5.89883 5.91836 6.01963 6.04528 6.07506 6.11792 6.23228 6.32234 6.46009 6.52254 6.56190 6.88533 7.08561 7.11482 7.19058 7.23093 7.49087 7.66581 8.10848 8.33601 8.53551 8.84789 8.97918 9.56472 11.08119 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010142 B = 0.003516 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2760.203395 B = 7962.413184 C = 9983.259311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.082 4.082 3 C -0.062 4.062 4 C -0.157 4.157 5 C 0.092 3.908 6 N -0.393 5.393 7 C 0.087 3.913 8 C 0.570 3.430 9 O -0.562 6.562 10 N -0.571 5.571 11 C 0.196 3.804 12 C -0.494 4.494 13 H 0.068 0.932 14 C 0.077 3.923 15 N -0.903 5.903 16 Si 0.866 3.134 17 H -0.280 1.280 18 H -0.287 1.287 19 H -0.260 1.260 20 C 0.127 3.873 21 C 0.043 3.957 22 N -0.535 5.535 23 C 0.012 3.988 24 C 0.065 3.935 25 O -0.389 6.389 26 C 0.066 3.934 27 C 0.018 3.982 28 C -0.118 4.118 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.130 0.870 35 H 0.154 0.846 36 H 0.082 0.918 37 H 0.014 0.986 38 H 0.261 0.739 39 H 0.080 0.920 40 H 0.071 0.929 41 H 0.057 0.943 42 H 0.076 0.924 43 H 0.047 0.953 44 H 0.087 0.913 45 H 0.057 0.943 46 H 0.095 0.905 47 H 0.058 0.942 48 H 0.095 0.905 49 H 0.085 0.915 50 H 0.044 0.956 51 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.465 -4.187 6.160 11.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.119 4.119 3 C -0.070 4.070 4 C -0.177 4.177 5 C -0.066 4.066 6 N -0.104 5.104 7 C -0.051 4.051 8 C 0.358 3.642 9 O -0.442 6.442 10 N -0.300 5.300 11 C 0.075 3.925 12 C -0.533 4.533 13 H 0.087 0.913 14 C -0.125 4.125 15 N -0.542 5.542 16 Si 0.694 3.306 17 H -0.206 1.206 18 H -0.213 1.213 19 H -0.185 1.185 20 C 0.003 3.997 21 C -0.085 4.085 22 N -0.261 5.261 23 C -0.116 4.116 24 C -0.012 4.012 25 O -0.308 6.308 26 C -0.011 4.011 27 C -0.110 4.110 28 C -0.139 4.139 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.148 0.852 35 H 0.171 0.829 36 H 0.099 0.901 37 H 0.031 0.969 38 H 0.071 0.929 39 H 0.099 0.901 40 H 0.089 0.911 41 H 0.075 0.925 42 H 0.094 0.906 43 H 0.065 0.935 44 H 0.106 0.894 45 H 0.076 0.924 46 H 0.113 0.887 47 H 0.076 0.924 48 H 0.113 0.887 49 H 0.103 0.897 50 H 0.062 0.938 51 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -8.306 -3.568 6.959 11.408 hybrid contribution -0.053 -0.147 -1.645 1.652 sum -8.359 -3.714 5.314 10.579 Atomic orbital electron populations 1.21744 0.94560 1.01688 1.02382 1.20517 0.96237 0.91995 1.03172 1.20154 0.97613 0.96399 0.92806 1.22185 1.00704 0.96498 0.98287 1.22966 0.94709 0.91910 0.97021 1.68556 1.09370 1.35143 0.97356 1.21160 0.98756 0.92185 0.92983 1.17863 0.77254 0.81989 0.87133 1.90693 1.55241 1.67663 1.30620 1.47884 1.64796 1.08843 1.08435 1.20571 1.00268 0.91143 0.80510 1.21117 0.95856 1.31160 1.05133 0.91348 1.24707 0.94678 0.96193 0.96882 1.69901 1.18147 1.45546 1.20623 0.87004 0.82828 0.81046 0.79738 1.20645 1.21343 1.18470 1.21272 0.95891 0.96096 0.86402 1.22508 0.97874 0.98855 0.89292 1.62194 1.28215 1.07583 1.28094 1.22854 1.02574 0.88599 0.97614 1.22661 0.85262 0.99743 0.93494 1.87952 1.34945 1.24278 1.83583 1.22646 1.01507 0.81197 0.95744 1.22745 0.90280 1.01357 0.96654 1.21880 0.98609 0.94500 0.98915 0.92521 0.92331 0.92389 0.90723 0.90639 0.85216 0.82878 0.90083 0.96850 0.92866 0.90120 0.91102 0.92464 0.90580 0.93517 0.89427 0.92442 0.88695 0.92415 0.88721 0.89708 0.93753 0.84365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.89 37.16 0.37 -0.96 16 2 C -0.08 -0.84 6.11 -27.88 -0.17 -1.01 16 3 C -0.06 -0.86 5.17 -104.35 -0.54 -1.40 16 4 C -0.16 -2.20 9.82 -39.32 -0.39 -2.59 16 5 C 0.09 1.60 11.18 -17.56 -0.20 1.40 16 6 N -0.39 -8.08 4.99 -9.80 -0.05 -8.13 16 7 C 0.09 1.75 6.63 -83.01 -0.55 1.20 16 8 C 0.57 12.21 7.58 -12.18 -0.09 12.12 16 9 O -0.56 -12.52 15.95 5.35 0.09 -12.43 16 10 N -0.57 -11.98 2.48 -176.06 -0.44 -12.42 16 11 C 0.20 4.44 3.88 -5.20 -0.02 4.42 16 12 C -0.49 -13.01 8.52 -34.44 -0.29 -13.31 16 13 H 0.07 2.06 8.06 -52.48 -0.42 1.63 16 14 C 0.08 2.08 5.47 -17.82 -0.10 1.98 16 15 N -0.90 -26.49 13.96 55.43 0.77 -25.71 16 16 Si 0.87 20.19 27.47 -169.99 -4.67 15.52 16 17 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 18 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.26 -5.73 6.54 56.52 0.37 -5.36 16 20 C 0.13 2.31 5.36 -4.04 -0.02 2.29 16 21 C 0.04 0.78 5.28 -3.82 -0.02 0.76 16 22 N -0.54 -8.27 4.73 -234.31 -1.11 -9.38 16 23 C 0.01 0.17 5.44 -3.71 -0.02 0.15 16 24 C 0.07 0.79 7.01 37.21 0.26 1.05 16 25 O -0.39 -5.35 10.83 -35.23 -0.38 -5.73 16 26 C 0.07 0.80 7.01 37.21 0.26 1.06 16 27 C 0.02 0.25 5.65 -3.71 -0.02 0.23 16 28 C -0.12 -1.97 9.34 -39.05 -0.36 -2.34 16 29 H 0.06 0.51 8.14 -51.94 -0.42 0.08 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.67 8.10 -51.93 -0.42 0.25 16 33 H 0.07 0.74 8.10 -51.93 -0.42 0.32 16 34 H 0.13 1.40 8.06 -52.48 -0.42 0.97 16 35 H 0.15 2.45 8.06 -52.49 -0.42 2.02 16 36 H 0.08 1.87 4.28 -52.45 -0.22 1.64 16 37 H 0.01 0.30 7.24 -51.93 -0.38 -0.07 16 38 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 39 H 0.08 1.46 7.47 -51.93 -0.39 1.07 16 40 H 0.07 1.17 6.22 -51.93 -0.32 0.85 16 41 H 0.06 1.20 8.10 -51.93 -0.42 0.78 16 42 H 0.08 1.51 8.04 -51.93 -0.42 1.09 16 43 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.09 1.14 6.38 -51.93 -0.33 0.81 16 45 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.09 0.96 8.14 -51.92 -0.42 0.54 16 47 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 48 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 49 H 0.08 1.13 8.09 -51.93 -0.42 0.71 16 50 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 51 H 0.14 2.19 7.66 -52.49 -0.40 1.79 16 LS Contribution 405.93 15.07 6.12 6.12 Total: -1.00 -31.84 405.93 -9.96 -41.79 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -8.38 Total: 5.32 kcal Atomic # 6 Polarization: 6.96 SS G_CDS: -1.90 Total: 5.06 kcal Atomic # 7 Polarization: -54.83 SS G_CDS: -0.82 Total: -55.65 kcal Atomic # 8 Polarization: -17.87 SS G_CDS: -0.30 Total: -18.16 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -4.67 Total: 15.52 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -31.84 -9.96 -41.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180129658.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.292 kcal (2) G-P(sol) polarization free energy of solvation -31.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds