Wall clock time and date at job start Wed Apr 1 2020 05:30:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50704 * 109.46994 * 2 1 4 4 C 1.38627 * 120.75283 * 269.97831 * 3 2 1 5 5 C 1.38562 * 119.35138 * 180.02562 * 4 3 2 6 6 N 1.31527 * 120.90118 * 359.73941 * 5 4 3 7 7 C 1.32712 * 121.64335 * 0.52864 * 6 5 4 8 8 C 1.48164 * 119.72398 * 179.74921 * 7 6 5 9 9 O 1.21517 * 120.00260 * 186.39698 * 8 7 6 10 10 N 1.34782 * 119.99712 * 6.40140 * 8 7 6 11 11 C 1.46494 * 120.00212 * 356.72503 * 10 8 7 12 12 C 1.50697 * 109.47490 * 277.24036 * 11 10 8 13 13 H 1.08005 * 119.99769 * 359.97438 * 12 11 10 14 14 C 1.37875 * 120.00229 * 180.02562 * 12 11 10 15 15 N 1.31510 * 120.00227 * 179.97438 * 14 12 11 16 16 Si 1.86806 * 119.99947 * 359.97438 * 14 12 11 17 17 H 1.48502 * 109.46994 * 90.00031 * 16 14 12 18 18 H 1.48499 * 109.47316 * 210.00566 * 16 14 12 19 19 H 1.48504 * 109.46878 * 330.00523 * 16 14 12 20 20 C 1.46496 * 119.99585 * 176.73129 * 10 8 7 21 21 C 1.53003 * 109.47459 * 89.99921 * 20 10 8 22 22 N 1.46902 * 109.47539 * 179.97438 * 21 20 10 23 23 C 1.47007 * 110.99920 * 293.63552 * 22 21 20 24 24 C 1.53098 * 109.25701 * 177.60555 * 23 22 21 25 25 O 1.43006 * 109.25873 * 56.84963 * 24 23 22 26 26 C 1.43013 * 113.73938 * 301.32907 * 25 24 23 27 27 C 1.47012 * 110.99995 * 170.00040 * 22 21 20 28 28 C 1.38590 * 120.75667 * 89.99608 * 3 2 1 29 29 H 1.08988 * 109.47345 * 60.00279 * 1 2 3 30 30 H 1.09003 * 109.46531 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47121 * 299.99957 * 1 2 3 32 32 H 1.08994 * 109.47552 * 239.99643 * 2 1 3 33 33 H 1.09001 * 109.47372 * 119.99378 * 2 1 3 34 34 H 1.08004 * 120.32272 * 359.97438 * 4 3 2 35 35 H 1.07997 * 119.54713 * 180.02562 * 5 4 3 36 36 H 1.09008 * 109.46588 * 37.23990 * 11 10 8 37 37 H 1.08996 * 109.47131 * 157.23398 * 11 10 8 38 38 H 0.97001 * 120.00329 * 179.97438 * 15 14 12 39 39 H 1.09001 * 109.47664 * 329.99528 * 20 10 8 40 40 H 1.09001 * 109.47214 * 209.99592 * 20 10 8 41 41 H 1.09001 * 109.47003 * 59.99203 * 21 20 10 42 42 H 1.09005 * 109.47091 * 299.99937 * 21 20 10 43 43 H 1.09000 * 109.51201 * 297.53965 * 23 22 21 44 44 H 1.09007 * 109.50804 * 57.66936 * 23 22 21 45 45 H 1.08997 * 109.50971 * 296.91160 * 24 23 22 46 46 H 1.09010 * 109.54071 * 176.80490 * 24 23 22 47 47 H 1.09001 * 109.50977 * 298.73644 * 26 25 24 48 48 H 1.08997 * 109.54778 * 178.62794 * 26 25 24 49 49 H 1.09000 * 109.50743 * 302.32642 * 27 22 21 50 50 H 1.08997 * 109.50573 * 62.41457 * 27 22 21 51 51 H 1.07993 * 120.46865 * 359.96119 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2690 2.0890 -1.1913 5 6 2.7312 3.3948 -1.1574 6 7 2.9423 4.0072 -0.0127 7 6 2.7332 3.4018 1.1496 8 6 2.9903 4.1301 2.4140 9 8 2.9131 3.5473 3.4775 10 7 3.3098 5.4392 2.3846 11 6 3.4732 6.1247 1.1003 12 6 4.8609 5.8731 0.5695 13 1 5.5523 5.2639 1.1328 14 6 5.2484 6.4215 -0.6347 15 7 6.4597 6.2024 -1.0976 16 14 4.0529 7.4758 -1.6087 17 1 4.1977 8.8958 -1.1987 18 1 4.3466 7.3467 -3.0586 19 1 2.6637 7.0232 -1.3428 20 6 3.4937 6.1766 3.6370 21 6 4.9591 6.0912 4.0687 22 7 5.1437 6.8311 5.3243 23 6 4.9284 8.2714 5.1236 24 6 5.0714 8.9951 6.4651 25 8 6.3592 8.7122 7.0188 26 6 6.6024 7.3185 7.2281 27 6 6.4749 6.5778 5.8943 28 6 2.2685 2.0891 1.1910 29 1 -0.3633 0.5137 -0.8899 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5137 0.8900 34 1 2.0956 1.5963 -2.1366 35 1 2.9163 3.9185 -2.0837 36 1 2.7382 5.7455 0.3901 37 1 3.3257 7.1957 1.2387 38 1 6.7322 6.5879 -1.9450 39 1 2.8611 5.7419 4.4110 40 1 3.2193 7.2208 3.4876 41 1 5.5917 6.5259 3.2948 42 1 5.2336 5.0469 4.2182 43 1 5.6687 8.6559 4.4220 44 1 3.9276 8.4378 4.7251 45 1 4.2969 8.6492 7.1497 46 1 4.9689 10.0696 6.3125 47 1 5.8724 6.9237 7.9348 48 1 7.6071 7.1794 7.6270 49 1 6.6030 5.5079 6.0584 50 1 7.2399 6.9344 5.2046 51 1 2.0946 1.5992 2.1376 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000180129658.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:30:12 Heat of formation + Delta-G solvation = -38.275749 kcal Electronic energy + Delta-G solvation = -31567.367371 eV Core-core repulsion = 27466.860830 eV Total energy + Delta-G solvation = -4100.506541 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.75665 -40.64476 -39.96589 -37.51899 -36.55797 -35.70290 -34.42873 -32.55070 -32.19701 -31.44981 -30.88715 -29.53455 -27.48040 -25.67407 -25.05968 -25.02131 -24.21895 -23.30435 -22.56738 -21.38979 -20.30679 -18.96484 -18.25639 -17.87132 -17.56733 -17.16764 -16.93700 -16.63602 -16.41984 -16.30787 -16.11106 -15.98229 -15.62274 -15.46186 -14.96532 -14.82683 -14.77690 -14.55186 -14.43122 -14.40058 -13.96351 -13.61121 -13.50638 -13.21103 -13.17400 -13.01215 -12.76401 -12.60314 -12.52369 -12.34795 -12.20071 -11.95463 -11.87276 -11.81669 -11.60300 -11.48162 -11.21674 -10.72817 -10.71902 -10.40472 -10.13833 -9.84839 -9.56283 -9.39524 -8.16696 -6.14800 -0.23150 0.35713 1.39862 1.42002 1.54450 1.74243 2.08004 2.43590 2.76474 2.94051 2.95167 3.22558 3.30458 3.64490 3.75791 3.80533 3.87962 3.98293 4.05259 4.10558 4.14370 4.17396 4.26695 4.32176 4.36891 4.41703 4.48818 4.51798 4.54253 4.67025 4.69042 4.71817 4.74426 4.78725 4.83698 4.85186 4.94708 4.98727 5.00697 5.05014 5.13294 5.26643 5.39703 5.42169 5.59470 5.65546 5.79459 5.87416 5.89769 6.14534 6.24833 6.52761 6.79456 6.94526 7.24317 7.45128 9.00855 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010142 B = 0.003516 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2760.203395 B = 7962.413184 C = 9983.259311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.079 4.079 3 C -0.053 4.053 4 C -0.136 4.136 5 C 0.073 3.927 6 N -0.433 5.433 7 C 0.053 3.947 8 C 0.563 3.437 9 O -0.580 6.580 10 N -0.578 5.578 11 C 0.207 3.793 12 C -0.480 4.480 13 H 0.013 0.987 14 C 0.024 3.976 15 N -0.955 5.955 16 Si 0.932 3.068 17 H -0.276 1.276 18 H -0.285 1.285 19 H -0.237 1.237 20 C 0.128 3.872 21 C 0.061 3.939 22 N -0.531 5.531 23 C 0.009 3.991 24 C 0.069 3.931 25 O -0.404 6.404 26 C 0.071 3.929 27 C 0.014 3.986 28 C -0.119 4.119 29 H 0.059 0.941 30 H 0.079 0.921 31 H 0.046 0.954 32 H 0.098 0.902 33 H 0.080 0.920 34 H 0.173 0.827 35 H 0.163 0.837 36 H 0.090 0.910 37 H 0.023 0.977 38 H 0.262 0.738 39 H 0.085 0.915 40 H 0.091 0.909 41 H 0.019 0.981 42 H 0.051 0.949 43 H 0.026 0.974 44 H 0.099 0.901 45 H 0.071 0.929 46 H 0.118 0.882 47 H 0.070 0.930 48 H 0.117 0.883 49 H 0.087 0.913 50 H 0.025 0.975 51 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.069 -4.691 5.735 13.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.117 4.117 3 C -0.061 4.061 4 C -0.156 4.156 5 C -0.086 4.086 6 N -0.145 5.145 7 C -0.084 4.084 8 C 0.351 3.649 9 O -0.462 6.462 10 N -0.306 5.306 11 C 0.085 3.915 12 C -0.519 4.519 13 H 0.032 0.968 14 C -0.173 4.173 15 N -0.597 5.597 16 Si 0.757 3.243 17 H -0.202 1.202 18 H -0.211 1.211 19 H -0.160 1.160 20 C 0.005 3.995 21 C -0.068 4.068 22 N -0.257 5.257 23 C -0.119 4.119 24 C -0.008 4.008 25 O -0.323 6.323 26 C -0.005 4.005 27 C -0.115 4.115 28 C -0.140 4.140 29 H 0.079 0.921 30 H 0.098 0.902 31 H 0.065 0.935 32 H 0.116 0.884 33 H 0.099 0.901 34 H 0.191 0.809 35 H 0.180 0.820 36 H 0.107 0.893 37 H 0.041 0.959 38 H 0.070 0.930 39 H 0.104 0.896 40 H 0.109 0.891 41 H 0.038 0.962 42 H 0.070 0.930 43 H 0.044 0.956 44 H 0.117 0.883 45 H 0.090 0.910 46 H 0.136 0.864 47 H 0.089 0.911 48 H 0.135 0.865 49 H 0.106 0.894 50 H 0.043 0.957 51 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -10.928 -4.068 6.569 13.384 hybrid contribution 0.799 -0.153 -1.491 1.698 sum -10.129 -4.220 5.079 12.091 Atomic orbital electron populations 1.21734 0.93333 1.03015 1.02027 1.20634 0.97100 0.89296 1.04621 1.20626 0.95789 0.98029 0.91613 1.22565 0.97885 0.94990 1.00112 1.23283 0.95370 0.93675 0.96309 1.68277 1.10878 1.37000 0.98316 1.21067 1.01454 0.93582 0.92281 1.18297 0.76685 0.82059 0.87865 1.90652 1.56159 1.67902 1.31444 1.47924 1.64890 1.09129 1.08672 1.20364 0.98017 0.91626 0.81461 1.21080 0.96659 1.29582 1.04558 0.96830 1.25482 0.96259 0.97636 0.97905 1.70070 1.20621 1.47683 1.21370 0.85946 0.81456 0.79017 0.77925 1.20193 1.21087 1.15983 1.21386 0.95519 0.96962 0.85623 1.22179 0.97414 0.97515 0.89669 1.62259 1.29011 1.08484 1.25909 1.22981 1.02532 0.87482 0.98901 1.22787 0.85060 1.00838 0.92121 1.87937 1.35845 1.24961 1.83544 1.22734 1.03292 0.80281 0.94219 1.22867 0.88978 1.02029 0.97585 1.22021 0.98158 0.93448 1.00418 0.92149 0.90207 0.93525 0.88405 0.90148 0.80937 0.82018 0.89301 0.95871 0.92956 0.89643 0.89113 0.96218 0.93026 0.95609 0.88277 0.91038 0.86396 0.91148 0.86509 0.89432 0.95701 0.84072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.89 71.98 0.71 -1.39 16 2 C -0.08 -1.35 6.11 29.85 0.18 -1.17 16 3 C -0.05 -1.35 5.17 -19.69 -0.10 -1.45 16 4 C -0.14 -3.43 9.82 22.44 0.22 -3.21 16 5 C 0.07 2.43 11.18 84.82 0.95 3.38 16 6 N -0.43 -17.97 4.99 -184.91 -0.92 -18.90 16 7 C 0.05 2.18 6.63 41.91 0.28 2.45 16 8 C 0.56 25.02 7.58 86.88 0.66 25.68 16 9 O -0.58 -26.77 15.95 -3.77 -0.06 -26.83 16 10 N -0.58 -25.15 2.48 -829.21 -2.06 -27.20 16 11 C 0.21 9.56 3.88 85.63 0.33 9.89 16 12 C -0.48 -26.52 8.52 25.60 0.22 -26.30 16 13 H 0.01 0.87 8.06 -2.91 -0.02 0.85 16 14 C 0.02 1.31 5.47 84.65 0.46 1.77 16 15 N -0.96 -58.42 13.96 21.45 0.30 -58.12 16 16 Si 0.93 41.81 27.47 68.60 1.88 43.70 16 17 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 18 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 19 H -0.24 -9.64 6.54 99.48 0.65 -8.99 16 20 C 0.13 4.80 5.36 86.38 0.46 5.26 16 21 C 0.06 2.39 5.28 86.30 0.46 2.85 16 22 N -0.53 -16.88 4.73 -895.21 -4.23 -21.12 16 23 C 0.01 0.25 5.44 86.32 0.47 0.72 16 24 C 0.07 1.54 7.01 72.01 0.50 2.05 16 25 O -0.40 -10.58 10.83 -148.98 -1.61 -12.19 16 26 C 0.07 1.65 7.01 72.02 0.50 2.16 16 27 C 0.01 0.40 5.65 86.32 0.49 0.89 16 28 C -0.12 -3.95 9.34 22.61 0.21 -3.74 16 29 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.10 1.29 8.10 -2.39 -0.02 1.27 16 33 H 0.08 1.34 8.10 -2.39 -0.02 1.32 16 34 H 0.17 2.86 8.06 -2.91 -0.02 2.84 16 35 H 0.16 4.96 8.06 -2.91 -0.02 4.94 16 36 H 0.09 4.09 4.28 -3.42 -0.01 4.07 16 37 H 0.02 1.03 7.24 -2.39 -0.02 1.01 16 38 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 39 H 0.09 3.14 7.47 -2.39 -0.02 3.12 16 40 H 0.09 3.00 6.22 -2.39 -0.01 2.98 16 41 H 0.02 0.90 8.10 -2.39 -0.02 0.88 16 42 H 0.05 2.22 8.04 -2.38 -0.02 2.21 16 43 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.10 2.50 6.38 -2.38 -0.02 2.48 16 45 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 46 H 0.12 2.12 8.14 -2.38 -0.02 2.10 16 47 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 48 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 49 H 0.09 2.45 8.09 -2.39 -0.02 2.43 16 50 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 51 H 0.14 4.47 7.66 -2.91 -0.02 4.45 16 Total: -1.00 -74.00 405.93 1.16 -72.85 By element: Atomic # 1 Polarization: 27.11 SS G_CDS: 0.85 Total: 27.96 kcal Atomic # 6 Polarization: 12.85 SS G_CDS: 7.01 Total: 19.85 kcal Atomic # 7 Polarization: -118.43 SS G_CDS: -6.91 Total: -125.34 kcal Atomic # 8 Polarization: -37.35 SS G_CDS: -1.67 Total: -39.02 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 1.88 Total: 43.70 kcal Total: -74.00 1.16 -72.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180129658.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.570 kcal (2) G-P(sol) polarization free energy of solvation -74.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds