Wall clock time and date at job start Wed Apr 1 2020 06:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50694 * 109.47381 * 2 1 4 4 N 1.31881 * 119.93376 * 90.00101 * 3 2 1 5 5 N 1.28273 * 122.62287 * 180.02562 * 4 3 2 6 6 C 1.32492 * 122.22013 * 359.97438 * 5 4 3 7 7 O 1.35452 * 120.25147 * 180.02562 * 6 5 4 8 8 C 1.40449 * 119.49583 * 0.02562 * 6 5 4 9 9 C 1.47821 * 121.18102 * 179.97438 * 8 6 5 10 10 O 1.21543 * 120.00350 * 89.99440 * 9 8 6 11 11 N 1.34784 * 119.99669 * 269.99616 * 9 8 6 12 12 C 1.46927 * 120.62995 * 359.71829 * 11 9 8 13 13 C 1.53626 * 108.53906 * 126.36585 * 12 11 9 14 14 C 1.53041 * 109.24183 * 54.85853 * 13 12 11 15 15 C 1.52998 * 109.46043 * 178.48489 * 14 13 12 16 16 C 1.50697 * 109.47311 * 295.06954 * 15 14 13 17 17 H 1.08003 * 119.99992 * 359.97438 * 16 15 14 18 18 C 1.37878 * 120.00008 * 180.02562 * 16 15 14 19 19 N 1.31513 * 120.00090 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99948 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47084 * 90.00014 * 20 18 16 22 22 H 1.48498 * 109.47170 * 209.99988 * 20 18 16 23 23 H 1.48502 * 109.47125 * 329.99888 * 20 18 16 24 24 C 1.53036 * 109.53807 * 298.50777 * 14 13 12 25 25 C 1.46923 * 120.62964 * 179.97438 * 11 9 8 26 26 C 1.38487 * 119.92961 * 270.25826 * 3 2 1 27 27 C 1.50700 * 121.05853 * 0.02562 * 26 3 2 28 28 C 1.52999 * 109.47195 * 270.21886 * 27 26 3 29 29 H 1.09001 * 109.47085 * 300.00055 * 1 2 3 30 30 H 1.09002 * 109.47489 * 59.99989 * 1 2 3 31 31 H 1.09005 * 109.47572 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.46799 * 239.99718 * 2 1 3 33 33 H 1.09007 * 109.47038 * 119.99948 * 2 1 3 34 34 H 0.96698 * 113.99872 * 269.97943 * 7 6 5 35 35 H 1.08998 * 109.58645 * 246.19910 * 12 11 9 36 36 H 1.09001 * 109.58579 * 6.63067 * 12 11 9 37 37 H 1.08990 * 109.63926 * 294.86483 * 13 12 11 38 38 H 1.09005 * 109.42826 * 174.72267 * 13 12 11 39 39 H 1.09009 * 109.44893 * 58.52020 * 14 13 12 40 40 H 1.09000 * 109.46928 * 55.07061 * 15 14 13 41 41 H 1.09002 * 109.46949 * 175.06508 * 15 14 13 42 42 H 0.96996 * 120.00075 * 180.02562 * 19 18 16 43 43 H 1.09001 * 109.49825 * 301.41219 * 24 14 13 44 44 H 1.09002 * 109.49833 * 181.31508 * 24 14 13 45 45 H 1.09007 * 109.58781 * 353.37617 * 25 11 9 46 46 H 1.08998 * 109.58580 * 113.65434 * 25 11 9 47 47 H 1.08996 * 109.47314 * 30.22190 * 27 26 3 48 48 H 1.09009 * 109.46779 * 150.22387 * 27 26 3 49 49 H 1.09008 * 109.46692 * 60.00013 * 28 27 26 50 50 H 1.09004 * 109.47111 * 180.02562 * 28 27 26 51 51 H 1.08996 * 109.47237 * 300.00350 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 7 2.2517 2.0412 1.1429 5 7 2.6784 3.2493 1.2031 6 6 2.9312 3.9642 0.1165 7 8 3.3812 5.2370 0.2265 8 6 2.7288 3.3922 -1.1501 9 6 2.9982 4.1560 -2.3867 10 8 4.1015 4.1196 -2.8953 11 7 2.0203 4.8928 -2.9502 12 6 0.6799 4.9419 -2.3504 13 6 0.2958 6.4133 -2.1326 14 6 0.4189 7.1683 -3.4581 15 6 0.0012 8.6260 -3.2551 16 6 -1.4611 8.6842 -2.8957 17 1 -2.0353 7.7726 -2.8200 18 6 -2.0663 9.9013 -2.6644 19 7 -1.3673 11.0114 -2.7570 20 14 -3.8792 9.9734 -2.2196 21 1 -4.0302 9.8983 -0.7442 22 1 -4.4594 11.2484 -2.7123 23 1 -4.5890 8.8307 -2.8486 24 6 1.8692 7.1164 -3.9439 25 6 2.2730 5.6578 -4.1788 26 6 2.2576 2.0740 -1.2002 27 6 2.0078 1.3871 -2.5181 28 6 3.2814 0.6687 -2.9682 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8932 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.6791 5.9011 0.2582 35 1 -0.0378 4.4693 -3.0209 36 1 0.6883 4.4195 -1.3938 37 1 0.9627 6.8607 -1.3958 38 1 -0.7325 6.4705 -1.7755 39 1 -0.2298 6.7047 -4.2014 40 1 0.5909 9.0642 -2.4499 41 1 0.1716 9.1844 -4.1756 42 1 -1.7930 11.8676 -2.5939 43 1 2.5214 7.5572 -3.1899 44 1 1.9609 7.6740 -4.8759 45 1 3.3328 5.6079 -4.4290 46 1 1.6846 5.2410 -4.9962 47 1 1.2027 0.6614 -2.4027 48 1 1.7248 2.1279 -3.2660 49 1 3.5643 -0.0721 -2.2202 50 1 3.1008 0.1722 -3.9217 51 1 4.0864 1.3943 -3.0835 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000569104361.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:02:06 Heat of formation + Delta-G solvation = -67.991952 kcal Electronic energy + Delta-G solvation = -32156.691160 eV Core-core repulsion = 28054.896028 eV Total energy + Delta-G solvation = -4101.795132 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.86264 -41.08903 -39.09260 -38.83908 -36.94033 -35.78153 -34.82311 -33.97810 -32.53876 -31.82599 -31.06034 -29.90047 -27.35147 -26.21242 -26.02407 -24.32908 -24.08649 -23.00032 -22.91329 -21.45520 -20.37175 -20.12577 -19.27498 -18.52202 -18.39091 -17.61503 -16.96150 -16.54253 -16.24043 -16.03841 -15.86170 -15.41305 -15.29468 -15.10990 -14.95533 -14.68975 -14.56007 -14.48794 -14.23648 -13.99041 -13.71851 -13.60258 -13.46160 -13.32261 -13.03937 -13.01909 -12.77601 -12.61950 -12.54623 -12.35069 -12.30974 -12.21364 -11.99136 -11.81856 -11.79593 -11.62690 -11.38728 -11.16817 -10.98377 -10.86102 -10.61888 -10.55467 -10.51551 -9.80604 -8.16114 -6.25358 -0.73318 -0.47881 1.14236 1.41907 1.42507 1.52525 1.67825 1.99359 2.21822 2.42721 2.88042 2.97386 3.18062 3.18475 3.46411 3.69682 3.75511 3.90989 3.99181 4.02728 4.10528 4.16039 4.21997 4.33144 4.33497 4.39309 4.40048 4.42768 4.55716 4.60495 4.71093 4.72996 4.84143 4.88749 4.92869 4.94375 5.02660 5.05683 5.08521 5.20387 5.24538 5.28124 5.29639 5.34899 5.45016 5.46600 5.56962 5.80526 5.90136 6.10238 6.17615 6.29075 6.78414 6.92250 7.40811 7.43825 8.95665 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012481 B = 0.003059 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2242.933105 B = 9150.602090 C = 9834.897910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.070 4.070 3 C 0.072 3.928 4 N -0.226 5.226 5 N -0.280 5.280 6 C 0.277 3.723 7 O -0.481 6.481 8 C -0.149 4.149 9 C 0.579 3.421 10 O -0.559 6.559 11 N -0.589 5.589 12 C 0.113 3.887 13 C -0.114 4.114 14 C -0.070 4.070 15 C 0.033 3.967 16 C -0.525 4.525 17 H 0.068 0.932 18 C -0.002 4.002 19 N -0.937 5.937 20 Si 0.956 3.044 21 H -0.276 1.276 22 H -0.290 1.290 23 H -0.259 1.259 24 C -0.123 4.123 25 C 0.119 3.881 26 C -0.018 4.018 27 C -0.092 4.092 28 C -0.147 4.147 29 H 0.046 0.954 30 H 0.064 0.936 31 H 0.090 0.910 32 H 0.115 0.885 33 H 0.095 0.905 34 H 0.421 0.579 35 H 0.099 0.901 36 H 0.078 0.922 37 H 0.049 0.951 38 H 0.078 0.922 39 H 0.068 0.932 40 H -0.015 1.015 41 H -0.013 1.013 42 H 0.260 0.740 43 H 0.047 0.953 44 H 0.076 0.924 45 H 0.084 0.916 46 H 0.095 0.905 47 H 0.127 0.873 48 H 0.078 0.922 49 H 0.072 0.928 50 H 0.090 0.910 51 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.216 -25.837 0.041 26.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.109 4.109 3 C -0.075 4.075 4 N -0.069 5.069 5 N -0.131 5.131 6 C 0.090 3.910 7 O -0.289 6.289 8 C -0.164 4.164 9 C 0.365 3.635 10 O -0.437 6.437 11 N -0.321 5.321 12 C -0.008 4.008 13 C -0.152 4.152 14 C -0.089 4.089 15 C -0.005 4.005 16 C -0.563 4.563 17 H 0.086 0.914 18 C -0.199 4.199 19 N -0.578 5.578 20 Si 0.781 3.219 21 H -0.202 1.202 22 H -0.216 1.216 23 H -0.183 1.183 24 C -0.161 4.161 25 C -0.002 4.002 26 C -0.030 4.030 27 C -0.129 4.129 28 C -0.205 4.205 29 H 0.065 0.935 30 H 0.083 0.917 31 H 0.109 0.891 32 H 0.133 0.867 33 H 0.114 0.886 34 H 0.283 0.717 35 H 0.117 0.883 36 H 0.096 0.904 37 H 0.068 0.932 38 H 0.096 0.904 39 H 0.087 0.913 40 H 0.003 0.997 41 H 0.005 0.995 42 H 0.069 0.931 43 H 0.065 0.935 44 H 0.095 0.905 45 H 0.102 0.898 46 H 0.113 0.887 47 H 0.145 0.855 48 H 0.096 0.904 49 H 0.091 0.909 50 H 0.108 0.892 51 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 4.335 -25.830 1.402 26.228 hybrid contribution -0.841 1.922 -0.881 2.276 sum 3.494 -23.908 0.521 24.167 Atomic orbital electron populations 1.21776 0.92440 1.04007 1.02278 1.20722 0.97660 0.86477 1.06042 1.23338 0.95683 1.00222 0.88221 1.72769 1.07513 1.00774 1.25869 1.73014 1.11020 1.02164 1.26898 1.20953 0.92914 0.88565 0.88541 1.84709 1.36687 1.12272 1.95221 1.21283 1.03203 0.97483 0.94440 1.17782 0.83995 0.78934 0.82772 1.90786 1.23836 1.65092 1.64006 1.48169 1.11383 1.45581 1.26931 1.22025 0.82467 0.97473 0.98881 1.21883 1.02189 0.93437 0.97676 1.21020 0.94771 0.96372 0.96736 1.19011 0.94961 0.92100 0.94381 1.21669 0.96184 0.92606 1.45814 0.91358 1.25929 1.02515 0.95696 0.95803 1.70103 1.38113 0.98276 1.51301 0.85579 0.80131 0.77670 0.78482 1.20187 1.21564 1.18252 1.21919 0.96736 0.95727 1.01704 1.21717 1.02621 0.90457 0.85432 1.21473 0.91648 0.90653 0.99196 1.20899 1.01315 1.00742 0.89981 1.21768 0.95383 1.00163 1.03144 0.93483 0.91741 0.89118 0.86735 0.88649 0.71662 0.88275 0.90395 0.93181 0.90372 0.91322 0.99681 0.99462 0.93127 0.93451 0.90529 0.89781 0.88706 0.85487 0.90353 0.90875 0.89154 0.94747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.78 71.98 0.70 -0.50 16 2 C -0.07 -0.70 5.56 29.84 0.17 -0.54 16 3 C 0.07 1.34 6.11 42.61 0.26 1.60 16 4 N -0.23 -5.76 11.40 -47.73 -0.54 -6.31 16 5 N -0.28 -8.28 11.52 -169.56 -1.95 -10.24 16 6 C 0.28 7.87 7.76 85.13 0.66 8.53 16 7 O -0.48 -13.67 13.09 -87.50 -1.15 -14.81 16 8 C -0.15 -3.78 3.68 -19.76 -0.07 -3.85 16 9 C 0.58 16.18 5.50 86.78 0.48 16.65 16 10 O -0.56 -19.43 16.52 -3.85 -0.06 -19.49 16 11 N -0.59 -14.59 2.97 -821.57 -2.44 -17.03 16 12 C 0.11 2.53 6.37 86.51 0.55 3.08 16 13 C -0.11 -3.40 5.21 30.82 0.16 -3.24 16 14 C -0.07 -2.44 2.10 -10.77 -0.02 -2.47 16 15 C 0.03 1.57 4.45 29.85 0.13 1.70 16 16 C -0.52 -27.26 8.39 25.60 0.21 -27.05 16 17 H 0.07 3.30 7.06 -2.91 -0.02 3.28 16 18 C 0.00 -0.12 5.46 84.66 0.46 0.34 16 19 N -0.94 -55.63 13.29 21.45 0.28 -55.34 16 20 Si 0.96 42.29 29.54 68.60 2.03 44.32 16 21 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 22 H -0.29 -12.87 7.11 99.48 0.71 -12.17 16 23 H -0.26 -10.69 7.11 99.48 0.71 -9.99 16 24 C -0.12 -3.72 5.36 30.66 0.16 -3.55 16 25 C 0.12 2.98 6.43 86.35 0.55 3.54 16 26 C -0.02 -0.34 5.22 -19.36 -0.10 -0.44 16 27 C -0.09 -1.17 5.07 29.85 0.15 -1.02 16 28 C -0.15 -1.88 9.78 71.98 0.70 -1.17 16 29 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.06 0.46 7.43 -2.39 -0.02 0.44 16 31 H 0.09 0.38 8.14 -2.38 -0.02 0.36 16 32 H 0.11 0.57 6.00 -2.38 -0.01 0.56 16 33 H 0.10 0.93 8.14 -2.38 -0.02 0.91 16 34 H 0.42 8.90 9.06 -74.06 -0.67 8.23 16 35 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.08 1.61 6.24 -2.39 -0.01 1.59 16 37 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.08 2.51 6.91 -2.38 -0.02 2.50 16 39 H 0.07 2.29 8.14 -2.38 -0.02 2.27 16 40 H -0.02 -0.82 8.14 -2.39 -0.02 -0.84 16 41 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 42 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 43 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 45 H 0.08 2.25 7.00 -2.38 -0.02 2.23 16 46 H 0.09 1.94 8.14 -2.39 -0.02 1.93 16 47 H 0.13 0.77 6.03 -2.39 -0.01 0.76 16 48 H 0.08 1.13 7.24 -2.38 -0.02 1.11 16 49 H 0.07 0.73 7.43 -2.38 -0.02 0.72 16 50 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 51 H 0.03 0.67 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -73.91 406.40 1.61 -72.30 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: 0.28 Total: 14.99 kcal Atomic # 6 Polarization: -13.56 SS G_CDS: 5.17 Total: -8.39 kcal Atomic # 7 Polarization: -84.26 SS G_CDS: -4.65 Total: -88.91 kcal Atomic # 8 Polarization: -33.10 SS G_CDS: -1.21 Total: -34.31 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Total: -73.91 1.61 -72.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569104361.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.303 kcal (2) G-P(sol) polarization free energy of solvation -73.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds