Wall clock time and date at job start Wed Apr 1 2020 05:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50707 * 109.46645 * 2 1 4 4 C 1.38048 * 126.28973 * 269.99832 * 3 2 1 5 5 C 1.47433 * 126.41287 * 0.02562 * 4 3 2 6 6 O 1.21603 * 120.00250 * 359.97438 * 5 4 3 7 7 N 1.34773 * 119.99499 * 180.02562 * 5 4 3 8 8 C 1.47025 * 125.65180 * 0.02562 * 7 5 4 9 9 C 1.54326 * 107.27132 * 181.02616 * 8 7 5 10 10 C 1.55150 * 102.94289 * 22.19291 * 9 8 7 11 11 O 1.42900 * 111.00837 * 82.57337 * 10 9 8 12 12 C 1.50705 * 111.00427 * 206.38809 * 10 9 8 13 13 H 1.08000 * 120.00001 * 359.97438 * 12 10 9 14 14 C 1.37878 * 119.99850 * 180.02562 * 12 10 9 15 15 N 1.31503 * 120.00486 * 359.97438 * 14 12 10 16 16 Si 1.86804 * 119.99612 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.46869 * 89.99730 * 16 14 12 18 18 H 1.48498 * 109.46976 * 209.99583 * 16 14 12 19 19 H 1.48492 * 109.47372 * 330.00122 * 16 14 12 20 20 C 1.47430 * 125.64802 * 179.71702 * 7 5 4 21 21 C 1.41288 * 107.17058 * 180.02562 * 4 3 2 22 22 N 1.30453 * 108.01984 * 0.02562 * 21 4 3 23 23 N 1.34251 * 126.29069 * 90.00237 * 3 2 1 24 24 C 1.46498 * 125.75506 * 0.03346 * 23 3 2 25 25 C 1.54266 * 110.03148 * 237.88961 * 24 23 3 26 26 C 1.54970 * 104.16055 * 217.13711 * 25 24 23 27 27 C 1.54891 * 102.77816 * 37.88814 * 26 25 24 28 28 C 1.53880 * 110.03068 * 120.67365 * 24 23 3 29 29 H 1.09001 * 109.47047 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47128 * 299.99969 * 1 2 3 31 31 H 1.08999 * 109.47506 * 59.99980 * 1 2 3 32 32 H 1.08997 * 109.47128 * 240.00031 * 2 1 3 33 33 H 1.08994 * 109.47067 * 119.99865 * 2 1 3 34 34 H 1.09004 * 109.87881 * 300.44059 * 8 7 5 35 35 H 1.09003 * 109.88345 * 61.60600 * 8 7 5 36 36 H 1.09000 * 110.71928 * 140.55610 * 9 8 7 37 37 H 1.08997 * 110.71575 * 263.64832 * 9 8 7 38 38 H 0.96699 * 114.00374 * 179.97438 * 11 10 9 39 39 H 0.97002 * 120.00591 * 179.97438 * 15 14 12 40 40 H 1.08997 * 110.36234 * 274.74475 * 20 7 5 41 41 H 1.09000 * 110.36143 * 37.06509 * 20 7 5 42 42 H 1.07997 * 125.99233 * 180.02562 * 21 4 3 43 43 H 1.09000 * 110.02010 * 359.28393 * 24 23 3 44 44 H 1.08997 * 110.49124 * 335.78439 * 25 24 23 45 45 H 1.08997 * 110.48764 * 98.42931 * 25 24 23 46 46 H 1.08997 * 110.71948 * 279.57169 * 26 25 24 47 47 H 1.09000 * 110.92102 * 156.29423 * 26 25 24 48 48 H 1.08997 * 110.48656 * 203.40846 * 27 26 25 49 49 H 1.08998 * 110.59424 * 80.81667 * 27 26 25 50 50 H 1.09001 * 110.03049 * 238.56567 * 28 24 23 51 51 H 1.08998 * 110.03561 * 359.95355 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3046 2.1913 -1.1127 5 6 2.1580 1.7781 -2.5204 6 8 1.7627 0.6597 -2.7878 7 7 2.4632 2.6398 -3.5107 8 6 2.9511 4.0149 -3.3301 9 6 3.1382 4.6231 -4.7361 10 6 2.2080 3.7499 -5.6190 11 8 0.8554 4.2047 -5.5438 12 6 2.6874 3.7238 -7.0475 13 1 3.5739 4.2724 -7.3297 14 6 1.9937 3.0004 -7.9943 15 7 0.9140 2.3329 -7.6509 16 14 2.5876 2.9687 -9.7652 17 1 3.5301 1.8363 -9.9509 18 1 1.4254 2.7995 -10.6740 19 1 3.2793 4.2448 -10.0783 20 6 2.3693 2.3574 -4.9547 21 6 2.7500 3.4497 -0.6499 22 7 2.7425 3.4258 0.6543 23 7 2.2971 2.1701 1.0821 24 6 2.1473 1.7441 2.4757 25 6 1.1796 2.6900 3.2164 26 6 1.7835 2.8127 4.6383 27 6 3.3074 2.8393 4.3622 28 6 3.4996 1.8385 3.2040 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 2.2200 4.5968 -2.7688 35 1 3.9041 4.0037 -2.8012 36 1 2.8181 5.6649 -4.7514 37 1 4.1754 4.5351 -5.0593 38 1 0.2368 3.6896 -6.0797 39 1 0.4257 1.8242 -8.3171 40 1 3.2788 1.8700 -5.3057 41 1 1.4993 1.7348 -5.1635 42 1 3.0450 4.2850 -1.2677 43 1 1.7728 0.7212 2.5151 44 1 1.1509 3.6645 2.7290 45 1 0.1811 2.2554 3.2614 46 1 1.5162 1.9487 5.2467 47 1 1.4619 3.7364 5.1194 48 1 3.8604 2.5139 5.2433 49 1 3.6250 3.8374 4.0606 50 1 3.7808 0.8617 3.5975 51 1 4.2674 2.2006 2.5204 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592850764.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:32:36 Heat of formation + Delta-G solvation = -16.751086 kcal Electronic energy + Delta-G solvation = -31789.681525 eV Core-core repulsion = 27690.108363 eV Total energy + Delta-G solvation = -4099.573162 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.52620 -39.08942 -38.04144 -36.92807 -34.51289 -33.83894 -32.17856 -32.11128 -30.17626 -29.15304 -29.08661 -28.32669 -27.32563 -25.18486 -23.84241 -23.07014 -22.05979 -21.15562 -20.94754 -19.67774 -19.21158 -18.45307 -17.23054 -17.01934 -16.36833 -15.64376 -15.38035 -15.18581 -15.03120 -14.70370 -14.50653 -14.19955 -14.12660 -13.84393 -13.70877 -13.28855 -13.00373 -12.93723 -12.71248 -12.34467 -12.29631 -11.90207 -11.88686 -11.65771 -11.54608 -11.53791 -11.49837 -11.41234 -11.28996 -11.01799 -10.98787 -10.95072 -10.69469 -10.55107 -10.51932 -10.45869 -10.13904 -9.38701 -9.29859 -9.16256 -8.65311 -8.44952 -8.30772 -7.64239 -6.26143 -4.35422 1.68444 2.32305 2.42906 3.22087 3.29805 3.32487 3.78202 3.97459 4.06439 4.14696 4.28378 4.37826 4.53014 4.72721 4.84284 4.91663 5.00539 5.02637 5.05588 5.17911 5.23717 5.28911 5.33219 5.43006 5.45842 5.46894 5.51152 5.57411 5.65995 5.68054 5.69823 5.78516 5.86190 5.88232 5.91969 5.97101 6.06848 6.18842 6.25696 6.32665 6.55330 6.59212 6.77552 6.91170 6.96681 7.11408 7.31856 7.39662 7.69961 7.77483 8.03325 8.37227 8.67722 8.94108 9.34306 9.50517 10.81029 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.023280 B = 0.002530 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.439359 B =11066.650302 C =11679.024017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.067 4.067 3 C 0.151 3.849 4 C -0.280 4.280 5 C 0.599 3.401 6 O -0.559 6.559 7 N -0.603 5.603 8 C 0.100 3.900 9 C -0.120 4.120 10 C 0.250 3.750 11 O -0.584 6.584 12 C -0.537 4.537 13 H 0.067 0.933 14 C 0.070 3.930 15 N -0.895 5.895 16 Si 0.904 3.096 17 H -0.278 1.278 18 H -0.285 1.285 19 H -0.272 1.272 20 C 0.096 3.904 21 C 0.068 3.932 22 N -0.300 5.300 23 N -0.356 5.356 24 C 0.153 3.847 25 C -0.131 4.131 26 C -0.122 4.122 27 C -0.120 4.120 28 C -0.132 4.132 29 H 0.064 0.936 30 H 0.046 0.954 31 H 0.068 0.932 32 H 0.112 0.888 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.057 0.943 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.386 0.614 39 H 0.271 0.729 40 H 0.059 0.941 41 H 0.082 0.918 42 H 0.199 0.801 43 H 0.105 0.895 44 H 0.085 0.915 45 H 0.073 0.927 46 H 0.069 0.931 47 H 0.072 0.928 48 H 0.068 0.932 49 H 0.071 0.929 50 H 0.074 0.926 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.375 -1.425 22.425 22.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.106 4.106 3 C 0.019 3.981 4 C -0.294 4.294 5 C 0.389 3.611 6 O -0.440 6.440 7 N -0.335 5.335 8 C -0.023 4.023 9 C -0.158 4.158 10 C 0.209 3.791 11 O -0.394 6.394 12 C -0.575 4.575 13 H 0.085 0.915 14 C -0.132 4.132 15 N -0.534 5.534 16 Si 0.731 3.269 17 H -0.204 1.204 18 H -0.210 1.210 19 H -0.197 1.197 20 C -0.025 4.025 21 C -0.119 4.119 22 N -0.119 5.119 23 N -0.136 5.136 24 C 0.052 3.948 25 C -0.169 4.169 26 C -0.159 4.159 27 C -0.158 4.158 28 C -0.170 4.170 29 H 0.083 0.917 30 H 0.065 0.935 31 H 0.087 0.913 32 H 0.130 0.870 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.238 0.762 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.100 0.900 42 H 0.215 0.785 43 H 0.123 0.877 44 H 0.104 0.896 45 H 0.091 0.909 46 H 0.088 0.912 47 H 0.091 0.909 48 H 0.087 0.913 49 H 0.090 0.910 50 H 0.093 0.907 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.500 -1.100 23.871 24.026 hybrid contribution -0.051 -0.870 -2.120 2.292 sum 2.449 -1.970 21.751 21.976 Atomic orbital electron populations 1.21640 0.93564 1.02275 1.02274 1.20415 0.97052 0.88688 1.04412 1.21465 0.95534 0.94788 0.86330 1.20124 1.19391 0.96106 0.93804 1.16824 0.77441 0.83938 0.82934 1.90684 1.48890 1.20332 1.84059 1.48431 1.64173 1.13079 1.07806 1.22257 0.97342 0.83574 0.99137 1.22659 1.00326 1.00042 0.92756 1.19613 0.80721 0.86698 0.92100 1.86062 1.19474 1.60960 1.72881 1.21509 1.12183 1.31030 0.92787 0.91506 1.25076 0.94587 0.93925 0.99656 1.69564 1.17378 1.31346 1.35099 0.86401 0.78390 0.78562 0.83537 1.20436 1.21016 1.19704 1.23285 1.01729 1.01725 0.75780 1.24775 0.97286 0.97957 0.91869 1.77086 1.22259 0.99381 1.13138 1.48590 1.49846 1.09776 1.05359 1.22092 0.97268 0.99032 0.76456 1.22748 0.97883 1.00628 0.95690 1.22474 0.95342 1.02216 0.95904 1.22316 0.96187 0.99822 0.97454 1.22497 0.96221 1.00414 0.97875 0.91672 0.93494 0.91336 0.86963 0.91354 0.91874 0.92478 0.90693 0.90454 0.76212 0.91914 0.92268 0.89985 0.78510 0.87740 0.89637 0.90876 0.91202 0.90916 0.91344 0.90975 0.90725 0.90269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 9.89 37.16 0.37 -1.30 16 2 C -0.07 -0.85 5.45 -27.88 -0.15 -1.00 16 3 C 0.15 2.23 6.26 -81.60 -0.51 1.72 16 4 C -0.28 -4.85 6.09 -105.06 -0.64 -5.49 16 5 C 0.60 12.48 7.85 -12.52 -0.10 12.38 16 6 O -0.56 -12.94 15.09 5.27 0.08 -12.86 16 7 N -0.60 -12.71 3.32 -171.63 -0.57 -13.28 16 8 C 0.10 1.78 4.98 -3.06 -0.02 1.76 16 9 C -0.12 -2.36 6.12 -24.90 -0.15 -2.52 16 10 C 0.25 6.03 0.89 -89.50 -0.08 5.95 16 11 O -0.58 -15.06 13.19 -35.23 -0.46 -15.53 16 12 C -0.54 -13.89 8.25 -34.44 -0.28 -14.17 16 13 H 0.07 1.69 7.77 -52.49 -0.41 1.28 16 14 C 0.07 1.83 5.30 -17.82 -0.09 1.74 16 15 N -0.89 -23.86 10.72 55.43 0.59 -23.27 16 16 Si 0.90 20.32 29.54 -169.99 -5.02 15.29 16 17 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 18 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 19 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 20 C 0.10 2.32 5.65 -2.41 -0.01 2.31 16 21 C 0.07 1.05 10.45 -16.98 -0.18 0.87 16 22 N -0.30 -4.39 11.92 30.86 0.37 -4.02 16 23 N -0.36 -4.65 3.18 -49.08 -0.16 -4.80 16 24 C 0.15 1.44 3.66 -66.81 -0.24 1.19 16 25 C -0.13 -1.11 6.52 -25.03 -0.16 -1.28 16 26 C -0.12 -0.78 6.91 -24.69 -0.17 -0.95 16 27 C -0.12 -0.85 6.83 -25.07 -0.17 -1.02 16 28 C -0.13 -1.10 6.54 -25.61 -0.17 -1.26 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.11 1.69 6.50 -51.93 -0.34 1.36 16 33 H 0.07 0.66 7.09 -51.93 -0.37 0.29 16 34 H 0.06 1.06 6.83 -51.93 -0.35 0.71 16 35 H 0.06 0.86 7.00 -51.93 -0.36 0.49 16 36 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 37 H 0.08 1.43 8.02 -51.93 -0.42 1.01 16 38 H 0.39 10.34 6.93 45.56 0.32 10.65 16 39 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 40 H 0.06 1.46 8.04 -51.93 -0.42 1.04 16 41 H 0.08 2.23 7.64 -51.93 -0.40 1.83 16 42 H 0.20 2.70 4.47 -52.49 -0.23 2.47 16 43 H 0.10 0.81 6.68 -51.93 -0.35 0.46 16 44 H 0.08 0.91 7.71 -51.93 -0.40 0.51 16 45 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 47 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 48 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 49 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 50 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 51 H 0.08 0.83 7.82 -51.93 -0.41 0.42 16 LS Contribution 398.16 15.07 6.00 6.00 Total: -1.00 -30.30 398.16 -9.44 -39.74 By element: Atomic # 1 Polarization: 21.28 SS G_CDS: -7.50 Total: 13.78 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: -2.77 Total: -1.06 kcal Atomic # 7 Polarization: -45.61 SS G_CDS: 0.24 Total: -45.38 kcal Atomic # 8 Polarization: -28.00 SS G_CDS: -0.39 Total: -28.38 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -30.30 -9.44 -39.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592850764.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.989 kcal (2) G-P(sol) polarization free energy of solvation -30.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds