Wall clock time and date at job start Wed Apr 1 2020 05:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50707 * 109.46645 * 2 1 4 4 C 1.38048 * 126.28973 * 269.99832 * 3 2 1 5 5 C 1.47433 * 126.41287 * 0.02562 * 4 3 2 6 6 O 1.21603 * 120.00250 * 359.97438 * 5 4 3 7 7 N 1.34773 * 119.99499 * 180.02562 * 5 4 3 8 8 C 1.47025 * 125.65180 * 0.02562 * 7 5 4 9 9 C 1.54326 * 107.27132 * 181.02616 * 8 7 5 10 10 C 1.55150 * 102.94289 * 22.19291 * 9 8 7 11 11 O 1.42900 * 111.00837 * 82.57337 * 10 9 8 12 12 C 1.50705 * 111.00427 * 206.38809 * 10 9 8 13 13 H 1.08000 * 120.00001 * 359.97438 * 12 10 9 14 14 C 1.37878 * 119.99850 * 180.02562 * 12 10 9 15 15 N 1.31503 * 120.00486 * 359.97438 * 14 12 10 16 16 Si 1.86804 * 119.99612 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.46869 * 89.99730 * 16 14 12 18 18 H 1.48498 * 109.46976 * 209.99583 * 16 14 12 19 19 H 1.48492 * 109.47372 * 330.00122 * 16 14 12 20 20 C 1.47430 * 125.64802 * 179.71702 * 7 5 4 21 21 C 1.41288 * 107.17058 * 180.02562 * 4 3 2 22 22 N 1.30453 * 108.01984 * 0.02562 * 21 4 3 23 23 N 1.34251 * 126.29069 * 90.00237 * 3 2 1 24 24 C 1.46498 * 125.75506 * 0.03346 * 23 3 2 25 25 C 1.54266 * 110.03148 * 237.88961 * 24 23 3 26 26 C 1.54970 * 104.16055 * 217.13711 * 25 24 23 27 27 C 1.54891 * 102.77816 * 37.88814 * 26 25 24 28 28 C 1.53880 * 110.03068 * 120.67365 * 24 23 3 29 29 H 1.09001 * 109.47047 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47128 * 299.99969 * 1 2 3 31 31 H 1.08999 * 109.47506 * 59.99980 * 1 2 3 32 32 H 1.08997 * 109.47128 * 240.00031 * 2 1 3 33 33 H 1.08994 * 109.47067 * 119.99865 * 2 1 3 34 34 H 1.09004 * 109.87881 * 300.44059 * 8 7 5 35 35 H 1.09003 * 109.88345 * 61.60600 * 8 7 5 36 36 H 1.09000 * 110.71928 * 140.55610 * 9 8 7 37 37 H 1.08997 * 110.71575 * 263.64832 * 9 8 7 38 38 H 0.96699 * 114.00374 * 179.97438 * 11 10 9 39 39 H 0.97002 * 120.00591 * 179.97438 * 15 14 12 40 40 H 1.08997 * 110.36234 * 274.74475 * 20 7 5 41 41 H 1.09000 * 110.36143 * 37.06509 * 20 7 5 42 42 H 1.07997 * 125.99233 * 180.02562 * 21 4 3 43 43 H 1.09000 * 110.02010 * 359.28393 * 24 23 3 44 44 H 1.08997 * 110.49124 * 335.78439 * 25 24 23 45 45 H 1.08997 * 110.48764 * 98.42931 * 25 24 23 46 46 H 1.08997 * 110.71948 * 279.57169 * 26 25 24 47 47 H 1.09000 * 110.92102 * 156.29423 * 26 25 24 48 48 H 1.08997 * 110.48656 * 203.40846 * 27 26 25 49 49 H 1.08998 * 110.59424 * 80.81667 * 27 26 25 50 50 H 1.09001 * 110.03049 * 238.56567 * 28 24 23 51 51 H 1.08998 * 110.03561 * 359.95355 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3046 2.1913 -1.1127 5 6 2.1580 1.7781 -2.5204 6 8 1.7627 0.6597 -2.7878 7 7 2.4632 2.6398 -3.5107 8 6 2.9511 4.0149 -3.3301 9 6 3.1382 4.6231 -4.7361 10 6 2.2080 3.7499 -5.6190 11 8 0.8554 4.2047 -5.5438 12 6 2.6874 3.7238 -7.0475 13 1 3.5739 4.2724 -7.3297 14 6 1.9937 3.0004 -7.9943 15 7 0.9140 2.3329 -7.6509 16 14 2.5876 2.9687 -9.7652 17 1 3.5301 1.8363 -9.9509 18 1 1.4254 2.7995 -10.6740 19 1 3.2793 4.2448 -10.0783 20 6 2.3693 2.3574 -4.9547 21 6 2.7500 3.4497 -0.6499 22 7 2.7425 3.4258 0.6543 23 7 2.2971 2.1701 1.0821 24 6 2.1473 1.7441 2.4757 25 6 1.1796 2.6900 3.2164 26 6 1.7835 2.8127 4.6383 27 6 3.3074 2.8393 4.3622 28 6 3.4996 1.8385 3.2040 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 2.2200 4.5968 -2.7688 35 1 3.9041 4.0037 -2.8012 36 1 2.8181 5.6649 -4.7514 37 1 4.1754 4.5351 -5.0593 38 1 0.2368 3.6896 -6.0797 39 1 0.4257 1.8242 -8.3171 40 1 3.2788 1.8700 -5.3057 41 1 1.4993 1.7348 -5.1635 42 1 3.0450 4.2850 -1.2677 43 1 1.7728 0.7212 2.5151 44 1 1.1509 3.6645 2.7290 45 1 0.1811 2.2554 3.2614 46 1 1.5162 1.9487 5.2467 47 1 1.4619 3.7364 5.1194 48 1 3.8604 2.5139 5.2433 49 1 3.6250 3.8374 4.0606 50 1 3.7808 0.8617 3.5975 51 1 4.2674 2.2006 2.5204 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592850764.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:32:35 Heat of formation + Delta-G solvation = -35.879917 kcal Electronic energy + Delta-G solvation = -31790.511013 eV Core-core repulsion = 27690.108363 eV Total energy + Delta-G solvation = -4100.402650 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.67400 -40.66813 -38.94067 -38.54396 -36.17802 -35.06677 -34.13597 -33.20468 -31.82541 -30.35765 -29.76399 -29.73581 -28.54233 -26.93565 -25.15124 -24.41342 -23.10363 -22.36902 -21.62696 -21.42307 -20.33044 -19.79057 -19.12267 -18.19829 -17.50395 -17.08727 -16.79558 -16.53756 -16.33244 -16.16860 -15.82172 -15.63161 -15.29199 -14.87191 -14.77297 -14.61709 -14.49837 -14.35173 -14.22923 -13.66284 -13.45880 -13.36610 -13.18405 -12.92382 -12.83430 -12.69473 -12.63559 -12.39755 -12.32157 -12.29642 -12.16823 -12.11725 -12.07685 -12.02819 -11.81726 -11.60219 -11.50538 -11.21191 -10.81334 -10.62786 -10.36595 -10.27258 -9.73943 -9.30963 -8.24032 -6.40858 0.48073 1.15341 1.31990 1.43070 1.44883 1.54912 2.20994 2.40488 2.46801 3.02038 3.30536 3.43065 3.51369 3.65973 3.78578 3.80917 3.95450 3.99800 4.14836 4.21200 4.27278 4.28646 4.29785 4.36059 4.43401 4.44235 4.52420 4.55032 4.62972 4.70021 4.72284 4.77438 4.84219 4.93189 4.99035 5.05320 5.08839 5.10525 5.16996 5.19814 5.22439 5.26550 5.34158 5.37949 5.43345 5.45938 5.53331 5.78311 5.95027 6.06290 6.53471 6.65184 6.78140 7.30367 7.32667 7.41237 8.81652 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.023280 B = 0.002530 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.439359 B =11066.650302 C =11679.024017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.066 4.066 3 C 0.158 3.842 4 C -0.313 4.313 5 C 0.592 3.408 6 O -0.595 6.595 7 N -0.610 5.610 8 C 0.103 3.897 9 C -0.114 4.114 10 C 0.233 3.767 11 O -0.590 6.590 12 C -0.554 4.554 13 H 0.071 0.929 14 C 0.024 3.976 15 N -0.919 5.919 16 Si 0.966 3.034 17 H -0.277 1.277 18 H -0.284 1.284 19 H -0.265 1.265 20 C 0.110 3.890 21 C 0.068 3.932 22 N -0.304 5.304 23 N -0.343 5.343 24 C 0.139 3.861 25 C -0.131 4.131 26 C -0.113 4.113 27 C -0.119 4.119 28 C -0.129 4.129 29 H 0.085 0.915 30 H 0.067 0.933 31 H 0.029 0.971 32 H 0.084 0.916 33 H 0.108 0.892 34 H 0.075 0.925 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.377 0.623 39 H 0.270 0.730 40 H 0.045 0.955 41 H 0.040 0.960 42 H 0.211 0.789 43 H 0.130 0.870 44 H 0.059 0.941 45 H 0.085 0.915 46 H 0.091 0.909 47 H 0.076 0.924 48 H 0.086 0.914 49 H 0.055 0.945 50 H 0.097 0.903 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.256 -1.252 25.234 25.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.104 4.104 3 C 0.024 3.976 4 C -0.328 4.328 5 C 0.384 3.616 6 O -0.478 6.478 7 N -0.342 5.342 8 C -0.019 4.019 9 C -0.152 4.152 10 C 0.192 3.808 11 O -0.399 6.399 12 C -0.592 4.592 13 H 0.089 0.911 14 C -0.176 4.176 15 N -0.558 5.558 16 Si 0.791 3.209 17 H -0.203 1.203 18 H -0.210 1.210 19 H -0.189 1.189 20 C -0.013 4.013 21 C -0.119 4.119 22 N -0.123 5.123 23 N -0.122 5.122 24 C 0.039 3.961 25 C -0.169 4.169 26 C -0.151 4.151 27 C -0.156 4.156 28 C -0.167 4.167 29 H 0.103 0.897 30 H 0.086 0.914 31 H 0.048 0.952 32 H 0.103 0.897 33 H 0.127 0.873 34 H 0.093 0.907 35 H 0.110 0.890 36 H 0.105 0.895 37 H 0.109 0.891 38 H 0.227 0.773 39 H 0.080 0.920 40 H 0.063 0.937 41 H 0.059 0.941 42 H 0.228 0.772 43 H 0.147 0.853 44 H 0.078 0.922 45 H 0.103 0.897 46 H 0.109 0.891 47 H 0.095 0.905 48 H 0.105 0.895 49 H 0.074 0.926 50 H 0.116 0.884 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.405 -0.882 26.731 26.961 hybrid contribution -0.345 -0.961 -2.886 3.062 sum 3.060 -1.843 23.845 24.111 Atomic orbital electron populations 1.21598 0.92916 1.03343 1.01320 1.20467 0.97483 0.87496 1.04997 1.21736 0.94173 0.95473 0.86228 1.19941 1.22630 0.97909 0.92315 1.17384 0.76532 0.83399 0.84257 1.90650 1.50450 1.21855 1.84844 1.48471 1.64680 1.14541 1.06472 1.22425 0.99324 0.81664 0.98489 1.22670 0.99868 0.99924 0.92704 1.19873 0.80534 0.87784 0.92567 1.86053 1.20284 1.60909 1.72678 1.21841 1.12404 1.31090 0.93907 0.91105 1.25849 0.94730 0.93611 1.03441 1.69685 1.18276 1.31820 1.36066 0.85433 0.77802 0.78678 0.78977 1.20266 1.20955 1.18886 1.22847 0.99050 1.01146 0.78251 1.24913 0.97126 0.97625 0.92200 1.77062 1.22256 1.00360 1.12644 1.48914 1.48044 1.08824 1.06375 1.22640 0.98495 1.00508 0.74432 1.22745 0.98507 0.99046 0.96602 1.22471 0.94417 1.03447 0.94771 1.22315 0.96999 0.98685 0.97634 1.22506 0.94680 1.01918 0.97631 0.89659 0.91388 0.95209 0.89725 0.87333 0.90651 0.88977 0.89537 0.89056 0.77274 0.92037 0.93674 0.94129 0.77238 0.85273 0.92205 0.89665 0.89079 0.90485 0.89506 0.92580 0.88403 0.92703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.05 9.89 71.98 0.71 -2.34 16 2 C -0.07 -1.59 5.45 29.85 0.16 -1.43 16 3 C 0.16 4.54 6.26 42.15 0.26 4.81 16 4 C -0.31 -10.89 6.09 -20.15 -0.12 -11.01 16 5 C 0.59 25.58 7.85 86.67 0.68 26.26 16 6 O -0.59 -29.11 15.09 -4.04 -0.06 -29.18 16 7 N -0.61 -26.40 3.32 -815.18 -2.71 -29.11 16 8 C 0.10 3.56 4.98 86.73 0.43 4.00 16 9 C -0.11 -4.40 6.12 31.78 0.19 -4.20 16 10 C 0.23 11.51 0.89 -10.07 -0.01 11.50 16 11 O -0.59 -31.41 13.19 -148.98 -1.97 -33.38 16 12 C -0.55 -29.09 8.25 25.60 0.21 -28.88 16 13 H 0.07 3.57 7.77 -2.91 -0.02 3.55 16 14 C 0.02 1.27 5.30 84.66 0.45 1.72 16 15 N -0.92 -50.82 10.72 21.45 0.23 -50.59 16 16 Si 0.97 42.13 29.54 68.60 2.03 44.16 16 17 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 18 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 19 H -0.26 -11.12 7.11 99.48 0.71 -10.42 16 20 C 0.11 5.57 5.65 86.93 0.49 6.06 16 21 C 0.07 2.04 10.45 85.65 0.89 2.93 16 22 N -0.30 -8.55 11.92 -56.28 -0.67 -9.22 16 23 N -0.34 -8.35 3.18 -309.21 -0.98 -9.33 16 24 C 0.14 2.20 3.66 45.72 0.17 2.36 16 25 C -0.13 -1.86 6.52 31.70 0.21 -1.65 16 26 C -0.11 -1.08 6.91 31.91 0.22 -0.86 16 27 C -0.12 -1.34 6.83 31.67 0.22 -1.12 16 28 C -0.13 -1.77 6.54 31.32 0.20 -1.57 16 29 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.08 2.60 6.50 -2.39 -0.02 2.58 16 33 H 0.11 1.73 7.09 -2.39 -0.02 1.71 16 34 H 0.08 2.44 6.83 -2.38 -0.02 2.42 16 35 H 0.09 2.57 7.00 -2.39 -0.02 2.55 16 36 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 37 H 0.09 3.24 8.02 -2.39 -0.02 3.22 16 38 H 0.38 21.19 6.93 -74.06 -0.51 20.67 16 39 H 0.27 14.31 8.31 -92.71 -0.77 13.54 16 40 H 0.04 2.34 8.04 -2.39 -0.02 2.32 16 41 H 0.04 2.35 7.64 -2.39 -0.02 2.33 16 42 H 0.21 5.43 4.47 -2.91 -0.01 5.42 16 43 H 0.13 1.42 6.68 -2.39 -0.02 1.41 16 44 H 0.06 1.19 7.71 -2.39 -0.02 1.17 16 45 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 46 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 47 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 48 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 49 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 50 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 51 H 0.05 1.05 7.82 -2.39 -0.02 1.03 16 Total: -1.00 -69.73 398.16 1.67 -68.06 By element: Atomic # 1 Polarization: 41.58 SS G_CDS: 0.43 Total: 42.01 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: 5.37 Total: 6.58 kcal Atomic # 7 Polarization: -94.12 SS G_CDS: -4.13 Total: -98.26 kcal Atomic # 8 Polarization: -60.53 SS G_CDS: -2.03 Total: -62.55 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.16 kcal Total: -69.73 1.67 -68.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592850764.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.182 kcal (2) G-P(sol) polarization free energy of solvation -69.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds