Wall clock time and date at job start Wed Apr 1 2020 05:32:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.50697 * 109.47147 * 2 1
4 4 C 1.36239 * 126.51255 * 90.02923 * 3 2 1
5 5 C 1.46844 * 125.79920 * 359.95844 * 4 3 2
6 6 O 1.21680 * 119.99818 * 0.02562 * 5 4 3
7 7 N 1.34774 * 120.00315 * 180.02562 * 5 4 3
8 8 C 1.46493 * 120.00269 * 180.02562 * 7 5 4
9 9 C 1.53034 * 109.46090 * 84.93090 * 8 7 5
10 10 C 1.53195 * 109.31306 * 181.38511 * 9 8 7
11 11 N 1.46925 * 108.77667 * 305.36409 * 10 9 8
12 12 C 1.36929 * 120.63277 * 233.63089 * 11 10 9
13 13 H 1.07997 * 120.00065 * 27.38008 * 12 11 10
14 14 C 1.38821 * 120.00234 * 207.38024 * 12 11 10
15 15 N 1.31620 * 119.99583 * 16.58866 * 14 12 11
16 16 Si 1.86792 * 120.00337 * 196.58868 * 14 12 11
17 17 H 1.48503 * 109.47286 * 59.99654 * 16 14 12
18 18 H 1.48495 * 109.47416 * 179.97438 * 16 14 12
19 19 H 1.48504 * 109.46992 * 299.99750 * 16 14 12
20 20 C 1.46930 * 118.73735 * 53.60827 * 11 10 9
21 21 C 1.53041 * 109.46199 * 205.00105 * 8 7 5
22 22 N 1.37831 * 108.39788 * 180.22386 * 4 3 2
23 23 H 0.97004 * 125.34597 * 179.71116 * 22 4 3
24 24 C 1.34114 * 109.31011 * 359.55902 * 22 4 3
25 25 C 1.50695 * 125.82793 * 180.17131 * 24 22 4
26 26 C 1.38617 * 108.34256 * 0.43367 * 24 22 4
27 27 C 1.46616 * 126.51563 * 179.73159 * 26 24 22
28 28 C 1.50698 * 120.00240 * 94.23981 * 27 26 24
29 29 O 1.21328 * 119.99654 * 274.23369 * 27 26 24
30 30 H 1.08999 * 109.47893 * 180.02562 * 1 2 3
31 31 H 1.09004 * 109.46984 * 300.00230 * 1 2 3
32 32 H 1.09003 * 109.47405 * 59.99993 * 1 2 3
33 33 H 1.09004 * 109.46984 * 239.99770 * 2 1 3
34 34 H 1.08997 * 109.47014 * 120.00139 * 2 1 3
35 35 H 0.96999 * 119.99295 * 0.02562 * 7 5 4
36 36 H 1.09008 * 109.45066 * 324.96468 * 8 7 5
37 37 H 1.08994 * 109.50105 * 301.33440 * 9 8 7
38 38 H 1.08998 * 109.49899 * 61.43917 * 9 8 7
39 39 H 1.08997 * 109.58744 * 185.57945 * 10 9 8
40 40 H 1.09000 * 109.70507 * 65.22150 * 10 9 8
41 41 H 0.96998 * 119.99806 * 180.02562 * 15 14 12
42 42 H 1.08999 * 109.58860 * 186.60134 * 20 11 10
43 43 H 1.09007 * 109.70369 * 66.24846 * 20 11 10
44 44 H 1.08998 * 109.49700 * 298.56845 * 21 8 7
45 45 H 1.09002 * 109.50007 * 58.66209 * 21 8 7
46 46 H 1.09004 * 109.46925 * 265.16279 * 25 24 22
47 47 H 1.08996 * 109.47333 * 25.16757 * 25 24 22
48 48 H 1.09005 * 109.46841 * 145.16942 * 25 24 22
49 49 H 1.09003 * 109.46794 * 5.00601 * 28 27 26
50 50 H 1.08995 * 109.47205 * 125.00196 * 28 27 26
51 51 H 1.08996 * 109.47077 * 245.00684 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0323 1.4208 0.0000
4 6 2.3031 2.1849 1.0950
5 6 2.1542 1.7643 2.4940
6 8 1.7577 0.6435 2.7534
7 7 2.4567 2.6195 3.4907
8 6 2.3087 2.1998 4.8864
9 6 3.5719 1.4603 5.3330
10 6 3.3997 0.9927 6.7817
11 7 3.0529 2.1522 7.6148
12 6 3.7825 2.4499 8.7346
13 1 4.8211 2.1601 8.7953
14 6 3.1873 3.1243 9.7920
15 7 1.8754 3.1917 9.8743
16 14 4.2480 3.9359 11.0978
17 1 5.1174 4.9592 10.4637
18 1 3.3768 4.5856 12.1098
19 1 5.0931 2.9086 11.7579
20 6 1.9085 2.9864 7.2232
21 6 2.0974 3.4315 5.7697
22 7 2.7347 3.4217 0.6665
23 1 2.9900 4.1581 1.2440
24 6 2.7496 3.4462 -0.6744
25 6 3.1635 4.6150 -1.5308
26 6 2.3135 2.2148 -1.1380
27 6 2.1705 1.8113 -2.5403
28 6 3.2930 1.0825 -3.2329
29 8 1.1483 2.0641 -3.1430
30 1 -0.3635 -1.0276 0.0005
31 1 -0.3633 0.5139 0.8900
32 1 -0.3634 0.5138 -0.8900
33 1 1.8933 -0.5139 -0.8900
34 1 1.8933 -0.5138 0.8900
35 1 2.7724 3.5131 3.2838
36 1 1.4485 1.5363 4.9766
37 1 3.7346 0.5962 4.6889
38 1 4.4287 2.1308 5.2666
39 1 4.3317 0.5532 7.1370
40 1 2.6022 0.2518 6.8364
41 1 1.4594 3.6632 10.6129
42 1 1.8566 3.8623 7.8699
43 1 0.9869 2.4112 7.3124
44 1 2.9680 4.0835 5.6990
45 1 1.2106 3.9706 5.4362
46 1 2.2809 5.1891 -1.8131
47 1 3.8474 5.2521 -0.9701
48 1 3.6614 4.2491 -2.4288
49 1 4.0845 0.8679 -2.5148
50 1 2.9172 0.1480 -3.6494
51 1 3.6894 1.7046 -4.0354
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000593092140.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:32:33
Heat of formation + Delta-G solvation = -26.668849 kcal
Electronic energy + Delta-G solvation = -30966.347521 eV
Core-core repulsion = 26866.344293 eV
Total energy + Delta-G solvation = -4100.003228 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.06 seconds
Orbital eigenvalues (eV)
-41.95733 -39.53960 -38.89793 -37.32456 -34.87244 -34.08912 -32.55725 -31.89117
-30.80497 -30.20253 -29.62097 -29.43818 -27.15877 -25.15119 -23.92772 -23.03463
-22.35026 -21.98634 -20.94588 -19.78160 -19.16950 -18.86095 -18.24655 -16.84566
-15.97011 -15.87389 -15.78682 -15.42183 -15.03635 -14.89780 -14.72635 -14.32776
-14.25205 -13.97313 -13.78115 -13.67862 -13.58729 -13.15934 -13.10472 -12.95135
-12.68318 -12.59849 -12.55673 -12.41902 -12.32002 -12.09189 -11.52843 -11.29824
-11.17341 -10.99965 -10.87712 -10.75462 -10.56164 -10.34068 -10.11956 -10.08750
-9.92374 -9.75963 -9.55227 -9.05988 -8.86675 -8.50842 -8.30379 -6.74001
-5.83328 -3.25491 1.26946 1.64779 2.08321 2.67667 3.19618 3.33349
3.35296 3.41040 3.41757 3.98911 4.31567 4.45699 4.59613 4.73920
4.81916 4.92146 5.03348 5.04971 5.09449 5.27466 5.31193 5.34796
5.37897 5.41731 5.44588 5.48786 5.52508 5.57839 5.69155 5.76036
5.80168 5.99031 6.00789 6.14940 6.22914 6.25283 6.29661 6.35784
6.45508 6.50026 6.51762 6.60234 6.74294 6.82938 6.94124 6.99874
7.26046 7.26583 7.53197 7.62435 7.75012 8.24621 8.40185 9.16530
9.79689 10.36172 11.25500
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.022653 B = 0.002169 C = 0.002082
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1235.749183 B =12903.190409 C =13447.742046
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.139 4.139
2 C -0.065 4.065
3 C -0.032 4.032
4 C -0.050 4.050
5 C 0.584 3.416
6 O -0.522 6.522
7 N -0.724 5.724
8 C 0.152 3.848
9 C -0.138 4.138
10 C 0.147 3.853
11 N -0.593 5.593
12 C -0.252 4.252
13 H 0.066 0.934
14 C 0.001 3.999
15 N -0.904 5.904
16 Si 0.904 3.096
17 H -0.284 1.284
18 H -0.290 1.290
19 H -0.282 1.282
20 C 0.173 3.827
21 C -0.147 4.147
22 N -0.525 5.525
23 H 0.419 0.581
24 C 0.093 3.907
25 C -0.095 4.095
26 C -0.258 4.258
27 C 0.439 3.561
28 C -0.198 4.198
29 O -0.455 6.455
30 H 0.056 0.944
31 H 0.058 0.942
32 H 0.049 0.951
33 H 0.063 0.937
34 H 0.095 0.905
35 H 0.387 0.613
36 H 0.085 0.915
37 H 0.055 0.945
38 H 0.057 0.943
39 H 0.056 0.944
40 H 0.021 0.979
41 H 0.255 0.745
42 H 0.094 0.906
43 H 0.021 0.979
44 H 0.058 0.942
45 H 0.054 0.946
46 H 0.083 0.917
47 H 0.074 0.926
48 H 0.083 0.917
49 H 0.083 0.917
50 H 0.092 0.908
51 H 0.093 0.907
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.471 1.492 -25.178 25.460
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.197 4.197
2 C -0.103 4.103
3 C -0.040 4.040
4 C -0.161 4.161
5 C 0.371 3.629
6 O -0.398 6.398
7 N -0.374 5.374
8 C 0.050 3.950
9 C -0.179 4.179
10 C 0.020 3.980
11 N -0.315 5.315
12 C -0.382 4.382
13 H 0.084 0.916
14 C -0.197 4.197
15 N -0.548 5.548
16 Si 0.734 3.266
17 H -0.211 1.211
18 H -0.216 1.216
19 H -0.208 1.208
20 C 0.047 3.953
21 C -0.187 4.187
22 N -0.120 5.120
23 H 0.257 0.743
24 C -0.028 4.028
25 C -0.152 4.152
26 C -0.265 4.265
27 C 0.314 3.686
28 C -0.255 4.255
29 O -0.328 6.328
30 H 0.076 0.924
31 H 0.077 0.923
32 H 0.069 0.931
33 H 0.082 0.918
34 H 0.113 0.887
35 H 0.220 0.780
36 H 0.103 0.897
37 H 0.074 0.926
38 H 0.076 0.924
39 H 0.075 0.925
40 H 0.039 0.961
41 H 0.065 0.935
42 H 0.112 0.888
43 H 0.039 0.961
44 H 0.077 0.923
45 H 0.072 0.928
46 H 0.101 0.899
47 H 0.093 0.907
48 H 0.102 0.898
49 H 0.102 0.898
50 H 0.110 0.890
51 H 0.111 0.889
Dipole moment (debyes) X Y Z Total
from point charges 2.556 0.959 -24.963 25.112
hybrid contribution 0.923 1.393 0.959 1.927
sum 3.479 2.352 -24.004 24.369
Atomic orbital electron populations
1.21626 0.94557 1.01588 1.01886 1.20179 0.96300 0.90551 1.03256
1.19527 0.99258 0.96096 0.89088 1.19976 1.15190 0.86719 0.94212
1.17053 0.77910 0.85268 0.82681 1.90820 1.46426 1.19368 1.83158
1.46269 1.67773 1.16039 1.07287 1.21091 0.99143 0.97403 0.77401
1.22375 0.96923 0.99466 0.99106 1.20874 0.98510 0.90022 0.88558
1.44091 1.34324 1.26450 1.26682 1.19156 0.92323 1.33991 0.92732
0.91637 1.25049 0.95424 1.02204 0.97058 1.70005 1.07847 1.44870
1.32127 0.86347 0.79534 0.79573 0.81181 1.21103 1.21619 1.20843
1.20765 0.89057 0.96618 0.88878 1.22549 1.00540 0.95953 0.99625
1.41551 1.51110 1.12983 1.06363 0.74334 1.20571 1.02941 0.96260
0.83060 1.20500 1.02269 0.93949 0.98480 1.19838 1.16326 0.95523
0.94862 1.21695 0.86828 0.74475 0.85598 1.22245 0.98957 1.02111
1.02192 1.90560 1.29962 1.45312 1.66916 0.92449 0.92330 0.93144
0.91818 0.88711 0.77997 0.89696 0.92581 0.92429 0.92531 0.96062
0.93507 0.88774 0.96052 0.92288 0.92781 0.89866 0.90703 0.89781
0.89770 0.88975 0.88896
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.68 9.89 37.16 0.37 -1.31 16
2 C -0.07 -0.78 5.69 -27.88 -0.16 -0.94 16
3 C -0.03 -0.39 5.47 -104.07 -0.57 -0.96 16
4 C -0.05 -0.60 6.98 -82.41 -0.58 -1.18 16
5 C 0.58 8.46 7.76 -12.78 -0.10 8.36 16
6 O -0.52 -9.20 14.34 5.21 0.07 -9.12 16
7 N -0.72 -9.67 5.07 -55.03 -0.28 -9.95 16
8 C 0.15 2.55 2.41 -67.90 -0.16 2.38 16
9 C -0.14 -2.44 5.65 -26.61 -0.15 -2.60 16
10 C 0.15 3.10 6.52 -3.71 -0.02 3.08 16
11 N -0.59 -14.51 3.00 -172.32 -0.52 -15.03 16
12 C -0.25 -6.78 9.59 -15.06 -0.14 -6.93 16
13 H 0.07 1.73 7.88 -52.49 -0.41 1.31 16
14 C 0.00 0.03 4.93 -17.43 -0.09 -0.06 16
15 N -0.90 -25.74 11.11 55.49 0.62 -25.12 16
16 Si 0.90 21.26 29.58 -169.99 -5.03 16.23 16
17 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16
18 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16
19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16
20 C 0.17 3.98 5.31 -3.71 -0.02 3.96 16
21 C -0.15 -2.58 5.55 -26.61 -0.15 -2.73 16
22 N -0.52 -4.57 5.90 -5.56 -0.03 -4.60 16
23 H 0.42 2.44 8.13 -40.82 -0.33 2.11 16
24 C 0.09 0.80 7.22 -81.46 -0.59 0.21 16
25 C -0.09 -0.49 10.20 36.00 0.37 -0.12 16
26 C -0.26 -2.74 5.71 -105.10 -0.60 -3.34 16
27 C 0.44 4.39 6.53 -30.93 -0.20 4.19 16
28 C -0.20 -1.23 10.32 36.00 0.37 -0.86 16
29 O -0.45 -6.01 17.86 5.52 0.10 -5.91 16
30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16
31 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16
32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16
33 H 0.06 0.64 8.05 -51.93 -0.42 0.22 16
34 H 0.09 1.28 6.40 -51.93 -0.33 0.95 16
35 H 0.39 4.00 7.68 -40.82 -0.31 3.68 16
36 H 0.08 1.61 7.58 -51.92 -0.39 1.22 16
37 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16
38 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16
39 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16
40 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16
41 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16
42 H 0.09 2.41 5.98 -51.93 -0.31 2.10 16
43 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16
44 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16
45 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16
46 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16
47 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16
48 H 0.08 0.36 8.07 -51.93 -0.42 -0.06 16
49 H 0.08 0.46 7.99 -51.93 -0.41 0.04 16
50 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16
51 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16
LS Contribution 413.77 15.07 6.24 6.24
Total: -1.00 -33.33 413.77 -9.64 -42.97
By element:
Atomic # 1 Polarization: 11.52 SS G_CDS: -8.39 Total: 3.13 kcal
Atomic # 6 Polarization: 3.58 SS G_CDS: -2.42 Total: 1.16 kcal
Atomic # 7 Polarization: -54.49 SS G_CDS: -0.21 Total: -54.70 kcal
Atomic # 8 Polarization: -15.20 SS G_CDS: 0.17 Total: -15.03 kcal
Atomic # 14 Polarization: 21.26 SS G_CDS: -5.03 Total: 16.23 kcal
Total LS contribution 6.24 Total: 6.24 kcal
Total: -33.33 -9.64 -42.97 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000593092140.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 16.301 kcal
(2) G-P(sol) polarization free energy of solvation -33.325 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.024 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.645 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.970 kcal
(6) G-S(sol) free energy of system = (1) + (5) -26.669 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.07 seconds