Wall clock time and date at job start Wed Apr 1 2020 05:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50697 * 109.47147 * 2 1 4 4 C 1.36239 * 126.51255 * 90.02923 * 3 2 1 5 5 C 1.46844 * 125.79920 * 359.95844 * 4 3 2 6 6 O 1.21680 * 119.99818 * 0.02562 * 5 4 3 7 7 N 1.34774 * 120.00315 * 180.02562 * 5 4 3 8 8 C 1.46493 * 120.00269 * 180.02562 * 7 5 4 9 9 C 1.53034 * 109.46090 * 84.93090 * 8 7 5 10 10 C 1.53195 * 109.31306 * 181.38511 * 9 8 7 11 11 N 1.46925 * 108.77667 * 305.36409 * 10 9 8 12 12 C 1.36929 * 120.63277 * 233.63089 * 11 10 9 13 13 H 1.07997 * 120.00065 * 27.38008 * 12 11 10 14 14 C 1.38821 * 120.00234 * 207.38024 * 12 11 10 15 15 N 1.31620 * 119.99583 * 16.58866 * 14 12 11 16 16 Si 1.86792 * 120.00337 * 196.58868 * 14 12 11 17 17 H 1.48503 * 109.47286 * 59.99654 * 16 14 12 18 18 H 1.48495 * 109.47416 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.46992 * 299.99750 * 16 14 12 20 20 C 1.46930 * 118.73735 * 53.60827 * 11 10 9 21 21 C 1.53041 * 109.46199 * 205.00105 * 8 7 5 22 22 N 1.37831 * 108.39788 * 180.22386 * 4 3 2 23 23 H 0.97004 * 125.34597 * 179.71116 * 22 4 3 24 24 C 1.34114 * 109.31011 * 359.55902 * 22 4 3 25 25 C 1.50695 * 125.82793 * 180.17131 * 24 22 4 26 26 C 1.38617 * 108.34256 * 0.43367 * 24 22 4 27 27 C 1.46616 * 126.51563 * 179.73159 * 26 24 22 28 28 C 1.50698 * 120.00240 * 94.23981 * 27 26 24 29 29 O 1.21328 * 119.99654 * 274.23369 * 27 26 24 30 30 H 1.08999 * 109.47893 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46984 * 300.00230 * 1 2 3 32 32 H 1.09003 * 109.47405 * 59.99993 * 1 2 3 33 33 H 1.09004 * 109.46984 * 239.99770 * 2 1 3 34 34 H 1.08997 * 109.47014 * 120.00139 * 2 1 3 35 35 H 0.96999 * 119.99295 * 0.02562 * 7 5 4 36 36 H 1.09008 * 109.45066 * 324.96468 * 8 7 5 37 37 H 1.08994 * 109.50105 * 301.33440 * 9 8 7 38 38 H 1.08998 * 109.49899 * 61.43917 * 9 8 7 39 39 H 1.08997 * 109.58744 * 185.57945 * 10 9 8 40 40 H 1.09000 * 109.70507 * 65.22150 * 10 9 8 41 41 H 0.96998 * 119.99806 * 180.02562 * 15 14 12 42 42 H 1.08999 * 109.58860 * 186.60134 * 20 11 10 43 43 H 1.09007 * 109.70369 * 66.24846 * 20 11 10 44 44 H 1.08998 * 109.49700 * 298.56845 * 21 8 7 45 45 H 1.09002 * 109.50007 * 58.66209 * 21 8 7 46 46 H 1.09004 * 109.46925 * 265.16279 * 25 24 22 47 47 H 1.08996 * 109.47333 * 25.16757 * 25 24 22 48 48 H 1.09005 * 109.46841 * 145.16942 * 25 24 22 49 49 H 1.09003 * 109.46794 * 5.00601 * 28 27 26 50 50 H 1.08995 * 109.47205 * 125.00196 * 28 27 26 51 51 H 1.08996 * 109.47077 * 245.00684 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3031 2.1849 1.0950 5 6 2.1542 1.7643 2.4940 6 8 1.7577 0.6435 2.7534 7 7 2.4567 2.6195 3.4907 8 6 2.3087 2.1998 4.8864 9 6 3.5719 1.4603 5.3330 10 6 3.3997 0.9927 6.7817 11 7 3.0529 2.1522 7.6148 12 6 3.7825 2.4499 8.7346 13 1 4.8211 2.1601 8.7953 14 6 3.1873 3.1243 9.7920 15 7 1.8754 3.1917 9.8743 16 14 4.2480 3.9359 11.0978 17 1 5.1174 4.9592 10.4637 18 1 3.3768 4.5856 12.1098 19 1 5.0931 2.9086 11.7579 20 6 1.9085 2.9864 7.2232 21 6 2.0974 3.4315 5.7697 22 7 2.7347 3.4217 0.6665 23 1 2.9900 4.1581 1.2440 24 6 2.7496 3.4462 -0.6744 25 6 3.1635 4.6150 -1.5308 26 6 2.3135 2.2148 -1.1380 27 6 2.1705 1.8113 -2.5403 28 6 3.2930 1.0825 -3.2329 29 8 1.1483 2.0641 -3.1430 30 1 -0.3635 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.7724 3.5131 3.2838 36 1 1.4485 1.5363 4.9766 37 1 3.7346 0.5962 4.6889 38 1 4.4287 2.1308 5.2666 39 1 4.3317 0.5532 7.1370 40 1 2.6022 0.2518 6.8364 41 1 1.4594 3.6632 10.6129 42 1 1.8566 3.8623 7.8699 43 1 0.9869 2.4112 7.3124 44 1 2.9680 4.0835 5.6990 45 1 1.2106 3.9706 5.4362 46 1 2.2809 5.1891 -1.8131 47 1 3.8474 5.2521 -0.9701 48 1 3.6614 4.2491 -2.4288 49 1 4.0845 0.8679 -2.5148 50 1 2.9172 0.1480 -3.6494 51 1 3.6894 1.7046 -4.0354 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593092140.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:32:33 Heat of formation + Delta-G solvation = -26.668849 kcal Electronic energy + Delta-G solvation = -30966.347521 eV Core-core repulsion = 26866.344293 eV Total energy + Delta-G solvation = -4100.003228 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.95733 -39.53960 -38.89793 -37.32456 -34.87244 -34.08912 -32.55725 -31.89117 -30.80497 -30.20253 -29.62097 -29.43818 -27.15877 -25.15119 -23.92772 -23.03463 -22.35026 -21.98634 -20.94588 -19.78160 -19.16950 -18.86095 -18.24655 -16.84566 -15.97011 -15.87389 -15.78682 -15.42183 -15.03635 -14.89780 -14.72635 -14.32776 -14.25205 -13.97313 -13.78115 -13.67862 -13.58729 -13.15934 -13.10472 -12.95135 -12.68318 -12.59849 -12.55673 -12.41902 -12.32002 -12.09189 -11.52843 -11.29824 -11.17341 -10.99965 -10.87712 -10.75462 -10.56164 -10.34068 -10.11956 -10.08750 -9.92374 -9.75963 -9.55227 -9.05988 -8.86675 -8.50842 -8.30379 -6.74001 -5.83328 -3.25491 1.26946 1.64779 2.08321 2.67667 3.19618 3.33349 3.35296 3.41040 3.41757 3.98911 4.31567 4.45699 4.59613 4.73920 4.81916 4.92146 5.03348 5.04971 5.09449 5.27466 5.31193 5.34796 5.37897 5.41731 5.44588 5.48786 5.52508 5.57839 5.69155 5.76036 5.80168 5.99031 6.00789 6.14940 6.22914 6.25283 6.29661 6.35784 6.45508 6.50026 6.51762 6.60234 6.74294 6.82938 6.94124 6.99874 7.26046 7.26583 7.53197 7.62435 7.75012 8.24621 8.40185 9.16530 9.79689 10.36172 11.25500 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.022653 B = 0.002169 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.749183 B =12903.190409 C =13447.742046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.065 4.065 3 C -0.032 4.032 4 C -0.050 4.050 5 C 0.584 3.416 6 O -0.522 6.522 7 N -0.724 5.724 8 C 0.152 3.848 9 C -0.138 4.138 10 C 0.147 3.853 11 N -0.593 5.593 12 C -0.252 4.252 13 H 0.066 0.934 14 C 0.001 3.999 15 N -0.904 5.904 16 Si 0.904 3.096 17 H -0.284 1.284 18 H -0.290 1.290 19 H -0.282 1.282 20 C 0.173 3.827 21 C -0.147 4.147 22 N -0.525 5.525 23 H 0.419 0.581 24 C 0.093 3.907 25 C -0.095 4.095 26 C -0.258 4.258 27 C 0.439 3.561 28 C -0.198 4.198 29 O -0.455 6.455 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.049 0.951 33 H 0.063 0.937 34 H 0.095 0.905 35 H 0.387 0.613 36 H 0.085 0.915 37 H 0.055 0.945 38 H 0.057 0.943 39 H 0.056 0.944 40 H 0.021 0.979 41 H 0.255 0.745 42 H 0.094 0.906 43 H 0.021 0.979 44 H 0.058 0.942 45 H 0.054 0.946 46 H 0.083 0.917 47 H 0.074 0.926 48 H 0.083 0.917 49 H 0.083 0.917 50 H 0.092 0.908 51 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.471 1.492 -25.178 25.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.103 4.103 3 C -0.040 4.040 4 C -0.161 4.161 5 C 0.371 3.629 6 O -0.398 6.398 7 N -0.374 5.374 8 C 0.050 3.950 9 C -0.179 4.179 10 C 0.020 3.980 11 N -0.315 5.315 12 C -0.382 4.382 13 H 0.084 0.916 14 C -0.197 4.197 15 N -0.548 5.548 16 Si 0.734 3.266 17 H -0.211 1.211 18 H -0.216 1.216 19 H -0.208 1.208 20 C 0.047 3.953 21 C -0.187 4.187 22 N -0.120 5.120 23 H 0.257 0.743 24 C -0.028 4.028 25 C -0.152 4.152 26 C -0.265 4.265 27 C 0.314 3.686 28 C -0.255 4.255 29 O -0.328 6.328 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.113 0.887 35 H 0.220 0.780 36 H 0.103 0.897 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.039 0.961 41 H 0.065 0.935 42 H 0.112 0.888 43 H 0.039 0.961 44 H 0.077 0.923 45 H 0.072 0.928 46 H 0.101 0.899 47 H 0.093 0.907 48 H 0.102 0.898 49 H 0.102 0.898 50 H 0.110 0.890 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.556 0.959 -24.963 25.112 hybrid contribution 0.923 1.393 0.959 1.927 sum 3.479 2.352 -24.004 24.369 Atomic orbital electron populations 1.21626 0.94557 1.01588 1.01886 1.20179 0.96300 0.90551 1.03256 1.19527 0.99258 0.96096 0.89088 1.19976 1.15190 0.86719 0.94212 1.17053 0.77910 0.85268 0.82681 1.90820 1.46426 1.19368 1.83158 1.46269 1.67773 1.16039 1.07287 1.21091 0.99143 0.97403 0.77401 1.22375 0.96923 0.99466 0.99106 1.20874 0.98510 0.90022 0.88558 1.44091 1.34324 1.26450 1.26682 1.19156 0.92323 1.33991 0.92732 0.91637 1.25049 0.95424 1.02204 0.97058 1.70005 1.07847 1.44870 1.32127 0.86347 0.79534 0.79573 0.81181 1.21103 1.21619 1.20843 1.20765 0.89057 0.96618 0.88878 1.22549 1.00540 0.95953 0.99625 1.41551 1.51110 1.12983 1.06363 0.74334 1.20571 1.02941 0.96260 0.83060 1.20500 1.02269 0.93949 0.98480 1.19838 1.16326 0.95523 0.94862 1.21695 0.86828 0.74475 0.85598 1.22245 0.98957 1.02111 1.02192 1.90560 1.29962 1.45312 1.66916 0.92449 0.92330 0.93144 0.91818 0.88711 0.77997 0.89696 0.92581 0.92429 0.92531 0.96062 0.93507 0.88774 0.96052 0.92288 0.92781 0.89866 0.90703 0.89781 0.89770 0.88975 0.88896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 9.89 37.16 0.37 -1.31 16 2 C -0.07 -0.78 5.69 -27.88 -0.16 -0.94 16 3 C -0.03 -0.39 5.47 -104.07 -0.57 -0.96 16 4 C -0.05 -0.60 6.98 -82.41 -0.58 -1.18 16 5 C 0.58 8.46 7.76 -12.78 -0.10 8.36 16 6 O -0.52 -9.20 14.34 5.21 0.07 -9.12 16 7 N -0.72 -9.67 5.07 -55.03 -0.28 -9.95 16 8 C 0.15 2.55 2.41 -67.90 -0.16 2.38 16 9 C -0.14 -2.44 5.65 -26.61 -0.15 -2.60 16 10 C 0.15 3.10 6.52 -3.71 -0.02 3.08 16 11 N -0.59 -14.51 3.00 -172.32 -0.52 -15.03 16 12 C -0.25 -6.78 9.59 -15.06 -0.14 -6.93 16 13 H 0.07 1.73 7.88 -52.49 -0.41 1.31 16 14 C 0.00 0.03 4.93 -17.43 -0.09 -0.06 16 15 N -0.90 -25.74 11.11 55.49 0.62 -25.12 16 16 Si 0.90 21.26 29.58 -169.99 -5.03 16.23 16 17 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 18 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 C 0.17 3.98 5.31 -3.71 -0.02 3.96 16 21 C -0.15 -2.58 5.55 -26.61 -0.15 -2.73 16 22 N -0.52 -4.57 5.90 -5.56 -0.03 -4.60 16 23 H 0.42 2.44 8.13 -40.82 -0.33 2.11 16 24 C 0.09 0.80 7.22 -81.46 -0.59 0.21 16 25 C -0.09 -0.49 10.20 36.00 0.37 -0.12 16 26 C -0.26 -2.74 5.71 -105.10 -0.60 -3.34 16 27 C 0.44 4.39 6.53 -30.93 -0.20 4.19 16 28 C -0.20 -1.23 10.32 36.00 0.37 -0.86 16 29 O -0.45 -6.01 17.86 5.52 0.10 -5.91 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.64 8.05 -51.93 -0.42 0.22 16 34 H 0.09 1.28 6.40 -51.93 -0.33 0.95 16 35 H 0.39 4.00 7.68 -40.82 -0.31 3.68 16 36 H 0.08 1.61 7.58 -51.92 -0.39 1.22 16 37 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 39 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 42 H 0.09 2.41 5.98 -51.93 -0.31 2.10 16 43 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 45 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 48 H 0.08 0.36 8.07 -51.93 -0.42 -0.06 16 49 H 0.08 0.46 7.99 -51.93 -0.41 0.04 16 50 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 51 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 413.77 15.07 6.24 6.24 Total: -1.00 -33.33 413.77 -9.64 -42.97 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -8.39 Total: 3.13 kcal Atomic # 6 Polarization: 3.58 SS G_CDS: -2.42 Total: 1.16 kcal Atomic # 7 Polarization: -54.49 SS G_CDS: -0.21 Total: -54.70 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: 0.17 Total: -15.03 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.03 Total: 16.23 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -33.33 -9.64 -42.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593092140.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.301 kcal (2) G-P(sol) polarization free energy of solvation -33.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds