Wall clock time and date at job start Wed Apr 1 2020 05:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50697 * 109.47147 * 2 1 4 4 C 1.36239 * 126.51255 * 90.02923 * 3 2 1 5 5 C 1.46844 * 125.79920 * 359.95844 * 4 3 2 6 6 O 1.21680 * 119.99818 * 0.02562 * 5 4 3 7 7 N 1.34774 * 120.00315 * 180.02562 * 5 4 3 8 8 C 1.46493 * 120.00269 * 180.02562 * 7 5 4 9 9 C 1.53034 * 109.46090 * 84.93090 * 8 7 5 10 10 C 1.53195 * 109.31306 * 181.38511 * 9 8 7 11 11 N 1.46925 * 108.77667 * 305.36409 * 10 9 8 12 12 C 1.36929 * 120.63277 * 233.63089 * 11 10 9 13 13 H 1.07997 * 120.00065 * 27.38008 * 12 11 10 14 14 C 1.38821 * 120.00234 * 207.38024 * 12 11 10 15 15 N 1.31620 * 119.99583 * 16.58866 * 14 12 11 16 16 Si 1.86792 * 120.00337 * 196.58868 * 14 12 11 17 17 H 1.48503 * 109.47286 * 59.99654 * 16 14 12 18 18 H 1.48495 * 109.47416 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.46992 * 299.99750 * 16 14 12 20 20 C 1.46930 * 118.73735 * 53.60827 * 11 10 9 21 21 C 1.53041 * 109.46199 * 205.00105 * 8 7 5 22 22 N 1.37831 * 108.39788 * 180.22386 * 4 3 2 23 23 H 0.97004 * 125.34597 * 179.71116 * 22 4 3 24 24 C 1.34114 * 109.31011 * 359.55902 * 22 4 3 25 25 C 1.50695 * 125.82793 * 180.17131 * 24 22 4 26 26 C 1.38617 * 108.34256 * 0.43367 * 24 22 4 27 27 C 1.46616 * 126.51563 * 179.73159 * 26 24 22 28 28 C 1.50698 * 120.00240 * 94.23981 * 27 26 24 29 29 O 1.21328 * 119.99654 * 274.23369 * 27 26 24 30 30 H 1.08999 * 109.47893 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46984 * 300.00230 * 1 2 3 32 32 H 1.09003 * 109.47405 * 59.99993 * 1 2 3 33 33 H 1.09004 * 109.46984 * 239.99770 * 2 1 3 34 34 H 1.08997 * 109.47014 * 120.00139 * 2 1 3 35 35 H 0.96999 * 119.99295 * 0.02562 * 7 5 4 36 36 H 1.09008 * 109.45066 * 324.96468 * 8 7 5 37 37 H 1.08994 * 109.50105 * 301.33440 * 9 8 7 38 38 H 1.08998 * 109.49899 * 61.43917 * 9 8 7 39 39 H 1.08997 * 109.58744 * 185.57945 * 10 9 8 40 40 H 1.09000 * 109.70507 * 65.22150 * 10 9 8 41 41 H 0.96998 * 119.99806 * 180.02562 * 15 14 12 42 42 H 1.08999 * 109.58860 * 186.60134 * 20 11 10 43 43 H 1.09007 * 109.70369 * 66.24846 * 20 11 10 44 44 H 1.08998 * 109.49700 * 298.56845 * 21 8 7 45 45 H 1.09002 * 109.50007 * 58.66209 * 21 8 7 46 46 H 1.09004 * 109.46925 * 265.16279 * 25 24 22 47 47 H 1.08996 * 109.47333 * 25.16757 * 25 24 22 48 48 H 1.09005 * 109.46841 * 145.16942 * 25 24 22 49 49 H 1.09003 * 109.46794 * 5.00601 * 28 27 26 50 50 H 1.08995 * 109.47205 * 125.00196 * 28 27 26 51 51 H 1.08996 * 109.47077 * 245.00684 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3031 2.1849 1.0950 5 6 2.1542 1.7643 2.4940 6 8 1.7577 0.6435 2.7534 7 7 2.4567 2.6195 3.4907 8 6 2.3087 2.1998 4.8864 9 6 3.5719 1.4603 5.3330 10 6 3.3997 0.9927 6.7817 11 7 3.0529 2.1522 7.6148 12 6 3.7825 2.4499 8.7346 13 1 4.8211 2.1601 8.7953 14 6 3.1873 3.1243 9.7920 15 7 1.8754 3.1917 9.8743 16 14 4.2480 3.9359 11.0978 17 1 5.1174 4.9592 10.4637 18 1 3.3768 4.5856 12.1098 19 1 5.0931 2.9086 11.7579 20 6 1.9085 2.9864 7.2232 21 6 2.0974 3.4315 5.7697 22 7 2.7347 3.4217 0.6665 23 1 2.9900 4.1581 1.2440 24 6 2.7496 3.4462 -0.6744 25 6 3.1635 4.6150 -1.5308 26 6 2.3135 2.2148 -1.1380 27 6 2.1705 1.8113 -2.5403 28 6 3.2930 1.0825 -3.2329 29 8 1.1483 2.0641 -3.1430 30 1 -0.3635 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.7724 3.5131 3.2838 36 1 1.4485 1.5363 4.9766 37 1 3.7346 0.5962 4.6889 38 1 4.4287 2.1308 5.2666 39 1 4.3317 0.5532 7.1370 40 1 2.6022 0.2518 6.8364 41 1 1.4594 3.6632 10.6129 42 1 1.8566 3.8623 7.8699 43 1 0.9869 2.4112 7.3124 44 1 2.9680 4.0835 5.6990 45 1 1.2106 3.9706 5.4362 46 1 2.2809 5.1891 -1.8131 47 1 3.8474 5.2521 -0.9701 48 1 3.6614 4.2491 -2.4288 49 1 4.0845 0.8679 -2.5148 50 1 2.9172 0.1480 -3.6494 51 1 3.6894 1.7046 -4.0354 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593092140.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:32:32 Heat of formation + Delta-G solvation = -47.509232 kcal Electronic energy + Delta-G solvation = -30967.251228 eV Core-core repulsion = 26866.344293 eV Total energy + Delta-G solvation = -4100.906935 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.77477 -40.70794 -39.78623 -38.85843 -36.22231 -35.19559 -34.02256 -32.92484 -31.83090 -31.51393 -31.14086 -30.24379 -28.07424 -26.80043 -25.04803 -24.07527 -23.90989 -23.26019 -22.08008 -21.18800 -20.30742 -19.66509 -19.29968 -18.62337 -17.23749 -16.82069 -16.73913 -16.58915 -16.29869 -15.94758 -15.75646 -15.46338 -15.37563 -15.20078 -15.11824 -14.91389 -14.71185 -14.60466 -14.27134 -14.11479 -13.69228 -13.62279 -13.25493 -13.19771 -13.06900 -13.01504 -13.00778 -12.83950 -12.60917 -12.56230 -12.28319 -12.19970 -12.05803 -11.95958 -11.89097 -11.58448 -11.38515 -11.02700 -10.77057 -10.56457 -10.14168 -9.85591 -9.12790 -8.73344 -7.88702 -5.34243 0.37976 0.90499 1.29143 1.48490 1.49685 1.57117 1.92972 2.08530 2.26851 2.51168 3.26732 3.30373 3.63070 3.70827 3.75683 3.87685 3.99865 4.03133 4.10753 4.29331 4.31561 4.35982 4.43311 4.49266 4.57083 4.62175 4.66404 4.69347 4.73105 4.75533 4.80916 4.82325 4.86284 4.99349 5.01857 5.04768 5.06630 5.12122 5.18135 5.26782 5.28327 5.35346 5.44336 5.46920 5.56589 5.62721 5.68969 5.73638 6.33487 6.37463 6.53746 6.54769 7.13080 7.14664 7.82737 8.35132 9.18163 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.022653 B = 0.002169 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.749183 B =12903.190409 C =13447.742046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.065 4.065 3 C -0.042 4.042 4 C -0.071 4.071 5 C 0.585 3.415 6 O -0.560 6.560 7 N -0.711 5.711 8 C 0.165 3.835 9 C -0.122 4.122 10 C 0.144 3.856 11 N -0.609 5.609 12 C -0.263 4.263 13 H 0.068 0.932 14 C -0.051 4.051 15 N -0.936 5.936 16 Si 0.970 3.030 17 H -0.275 1.275 18 H -0.295 1.295 19 H -0.277 1.277 20 C 0.177 3.823 21 C -0.128 4.128 22 N -0.511 5.511 23 H 0.433 0.567 24 C 0.116 3.884 25 C -0.096 4.096 26 C -0.283 4.283 27 C 0.443 3.557 28 C -0.193 4.193 29 O -0.495 6.495 30 H 0.068 0.932 31 H 0.036 0.964 32 H 0.047 0.953 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.406 0.594 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.067 0.933 39 H 0.058 0.942 40 H 0.007 0.993 41 H 0.251 0.749 42 H 0.066 0.934 43 H -0.007 1.007 44 H 0.072 0.928 45 H 0.075 0.925 46 H 0.087 0.913 47 H 0.100 0.900 48 H 0.097 0.903 49 H 0.093 0.907 50 H 0.099 0.901 51 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.633 3.132 -27.479 28.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.103 4.103 3 C -0.050 4.050 4 C -0.182 4.182 5 C 0.374 3.626 6 O -0.439 6.439 7 N -0.361 5.361 8 C 0.061 3.939 9 C -0.162 4.162 10 C 0.018 3.982 11 N -0.332 5.332 12 C -0.393 4.393 13 H 0.086 0.914 14 C -0.246 4.246 15 N -0.582 5.582 16 Si 0.798 3.202 17 H -0.201 1.201 18 H -0.221 1.221 19 H -0.203 1.203 20 C 0.051 3.949 21 C -0.168 4.168 22 N -0.108 5.108 23 H 0.274 0.726 24 C -0.007 4.007 25 C -0.153 4.153 26 C -0.290 4.290 27 C 0.321 3.679 28 C -0.250 4.250 29 O -0.371 6.371 30 H 0.087 0.913 31 H 0.055 0.945 32 H 0.066 0.934 33 H 0.100 0.900 34 H 0.094 0.906 35 H 0.242 0.758 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.077 0.923 40 H 0.025 0.975 41 H 0.060 0.940 42 H 0.084 0.916 43 H 0.011 0.989 44 H 0.090 0.910 45 H 0.093 0.907 46 H 0.106 0.894 47 H 0.119 0.881 48 H 0.116 0.884 49 H 0.112 0.888 50 H 0.118 0.882 51 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 4.760 2.626 -27.281 27.818 hybrid contribution 0.235 0.837 1.618 1.837 sum 4.995 3.463 -25.663 26.373 Atomic orbital electron populations 1.21557 0.94925 1.01965 1.00574 1.20151 0.95956 0.91062 1.03152 1.19678 0.99172 0.96227 0.89968 1.19528 1.17613 0.88399 0.92689 1.17325 0.76994 0.84700 0.83616 1.90805 1.48107 1.21068 1.83873 1.45900 1.67738 1.16909 1.05585 1.20670 0.97736 0.96404 0.79129 1.22159 0.97634 0.99898 0.96544 1.20966 0.97956 0.88986 0.90288 1.44348 1.34353 1.27760 1.26778 1.19495 0.92714 1.33609 0.93499 0.91383 1.25818 0.96490 1.03086 0.99234 1.70174 1.09440 1.45856 1.32768 0.85308 0.77832 0.78617 0.78475 1.20067 1.22150 1.20333 1.20583 0.87687 0.94881 0.91762 1.22259 1.02111 0.96401 0.96007 1.41491 1.50254 1.12276 1.06745 0.72555 1.21151 1.00108 0.96429 0.83036 1.20696 1.03110 0.92877 0.98653 1.20066 1.17590 0.96355 0.94985 1.22168 0.86983 0.73502 0.85226 1.22268 0.97713 1.02238 1.02740 1.90553 1.31697 1.47166 1.67640 0.91302 0.94464 0.93389 0.90023 0.90588 0.75801 0.92206 0.92040 0.91432 0.92346 0.97462 0.94016 0.91579 0.98861 0.90975 0.90664 0.89411 0.88141 0.88441 0.88759 0.88240 0.86707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.27 9.89 71.98 0.71 -2.56 16 2 C -0.07 -1.57 5.69 29.85 0.17 -1.40 16 3 C -0.04 -1.00 5.47 -19.51 -0.11 -1.11 16 4 C -0.07 -1.64 6.98 39.99 0.28 -1.36 16 5 C 0.58 16.61 7.76 86.50 0.67 17.28 16 6 O -0.56 -20.13 14.34 -4.29 -0.06 -20.19 16 7 N -0.71 -17.90 5.07 -446.23 -2.26 -20.16 16 8 C 0.17 5.42 2.41 45.02 0.11 5.53 16 9 C -0.12 -4.22 5.65 30.67 0.17 -4.05 16 10 C 0.14 6.14 6.52 86.36 0.56 6.70 16 11 N -0.61 -30.28 3.00 -699.09 -2.10 -32.37 16 12 C -0.26 -14.24 9.59 84.04 0.81 -13.43 16 13 H 0.07 3.57 7.88 -2.91 -0.02 3.55 16 14 C -0.05 -2.80 4.93 84.86 0.42 -2.38 16 15 N -0.94 -54.73 11.11 21.65 0.24 -54.49 16 16 Si 0.97 43.93 29.58 68.60 2.03 45.96 16 17 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 18 H -0.30 -13.50 7.11 99.48 0.71 -12.79 16 19 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 20 C 0.18 8.33 5.31 86.36 0.46 8.79 16 21 C -0.13 -4.40 5.55 30.67 0.17 -4.23 16 22 N -0.51 -7.52 5.90 -171.49 -1.01 -8.53 16 23 H 0.43 3.55 8.13 -92.71 -0.75 2.80 16 24 C 0.12 1.66 7.22 42.30 0.31 1.96 16 25 C -0.10 -0.62 10.20 71.23 0.73 0.11 16 26 C -0.28 -5.49 5.71 -20.18 -0.12 -5.60 16 27 C 0.44 8.07 6.53 27.87 0.18 8.25 16 28 C -0.19 -1.87 10.32 71.24 0.73 -1.14 16 29 O -0.49 -12.59 17.86 -3.18 -0.06 -12.65 16 30 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.04 1.05 8.14 -2.38 -0.02 1.03 16 32 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.08 1.59 8.05 -2.38 -0.02 1.57 16 34 H 0.08 2.12 6.40 -2.39 -0.02 2.10 16 35 H 0.41 7.25 7.68 -92.71 -0.71 6.54 16 36 H 0.06 2.31 7.58 -2.38 -0.02 2.29 16 37 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 39 H 0.06 2.42 7.93 -2.39 -0.02 2.40 16 40 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 41 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 42 H 0.07 3.48 5.98 -2.39 -0.01 3.47 16 43 H -0.01 -0.35 8.14 -2.38 -0.02 -0.37 16 44 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 45 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 46 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 47 H 0.10 0.18 8.14 -2.39 -0.02 0.16 16 48 H 0.10 0.43 8.07 -2.38 -0.02 0.42 16 49 H 0.09 0.74 7.99 -2.39 -0.02 0.72 16 50 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 51 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 Total: -1.00 -75.22 413.77 2.52 -72.70 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: -0.51 Total: 18.39 kcal Atomic # 6 Polarization: 5.09 SS G_CDS: 6.26 Total: 11.35 kcal Atomic # 7 Polarization: -110.43 SS G_CDS: -5.13 Total: -115.56 kcal Atomic # 8 Polarization: -32.72 SS G_CDS: -0.12 Total: -32.84 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -75.22 2.52 -72.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593092140.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.188 kcal (2) G-P(sol) polarization free energy of solvation -75.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds