Wall clock time and date at job start Wed Apr 1 2020 06:05:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50699 * 109.47386 * 2 1 4 4 N 1.31792 * 119.12453 * 89.99946 * 3 2 1 5 5 C 1.32333 * 120.81606 * 179.97438 * 4 3 2 6 6 C 1.50705 * 120.44768 * 180.02562 * 5 4 3 7 7 C 1.38597 * 119.10863 * 0.02562 * 5 4 3 8 8 C 1.50695 * 120.80378 * 180.02562 * 7 5 4 9 9 C 1.50700 * 109.47062 * 89.99681 * 8 7 5 10 10 O 1.20829 * 120.00349 * 359.97438 * 9 8 7 11 11 O 1.34237 * 119.99951 * 180.02562 * 9 8 7 12 12 C 1.45200 * 117.00100 * 179.97438 * 11 9 8 13 13 C 1.53045 * 109.45918 * 270.02790 * 12 11 9 14 14 C 1.53188 * 109.31067 * 178.60219 * 13 12 11 15 15 N 1.46925 * 108.76678 * 54.65299 * 14 13 12 16 16 C 1.36935 * 120.63076 * 126.40781 * 15 14 13 17 17 H 1.07998 * 120.00000 * 332.60852 * 16 15 14 18 18 C 1.38817 * 119.99981 * 152.60751 * 16 15 14 19 19 N 1.31616 * 119.99809 * 159.34494 * 18 16 15 20 20 Si 1.86795 * 119.99867 * 339.34184 * 18 16 15 21 21 H 1.48500 * 109.46968 * 92.94744 * 20 18 16 22 22 H 1.48500 * 109.47001 * 212.94340 * 20 18 16 23 23 H 1.48493 * 109.47326 * 332.94074 * 20 18 16 24 24 C 1.46928 * 118.73770 * 306.38128 * 15 14 13 25 25 C 1.53037 * 109.46035 * 149.96879 * 12 11 9 26 26 C 1.38602 * 118.39594 * 0.26755 * 7 5 4 27 27 C 1.50701 * 120.44493 * 179.72746 * 26 7 5 28 28 N 1.31799 * 119.11660 * 269.97593 * 3 2 1 29 29 H 1.09002 * 109.47745 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46978 * 300.00332 * 1 2 3 31 31 H 1.09000 * 109.47036 * 59.99558 * 1 2 3 32 32 H 1.08996 * 109.47087 * 239.99499 * 2 1 3 33 33 H 1.09006 * 109.46851 * 120.00069 * 2 1 3 34 34 H 1.08998 * 109.46875 * 269.98411 * 6 5 4 35 35 H 1.09000 * 109.46835 * 29.97755 * 6 5 4 36 36 H 1.08991 * 109.47260 * 149.97891 * 6 5 4 37 37 H 1.09000 * 109.47026 * 209.99662 * 8 7 5 38 38 H 1.08999 * 109.47189 * 329.99843 * 8 7 5 39 39 H 1.09008 * 109.45656 * 29.99590 * 12 11 9 40 40 H 1.08997 * 109.49121 * 298.56576 * 13 12 11 41 41 H 1.08996 * 109.49982 * 58.65803 * 13 12 11 42 42 H 1.09007 * 109.59875 * 294.86267 * 14 13 12 43 43 H 1.09000 * 109.70361 * 174.50608 * 14 13 12 44 44 H 0.97001 * 120.00044 * 179.97438 * 19 18 16 45 45 H 1.09001 * 109.58694 * 293.82463 * 24 15 14 46 46 H 1.09003 * 109.70201 * 173.46777 * 24 15 14 47 47 H 1.09001 * 109.50102 * 301.33891 * 25 12 11 48 48 H 1.09003 * 109.49268 * 61.43494 * 25 12 11 49 49 H 1.08995 * 109.47108 * 90.00952 * 27 26 7 50 50 H 1.09007 * 109.46728 * 209.99958 * 27 26 7 51 51 H 1.08993 * 109.47343 * 330.00080 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2462 2.0255 1.1513 5 6 2.6876 3.2724 1.1903 6 6 2.9299 3.9558 2.5115 7 6 2.9242 3.9415 -0.0001 8 6 3.4277 5.3619 -0.0002 9 6 4.9347 5.3606 -0.0008 10 8 5.5381 4.3138 -0.0007 11 8 5.6068 6.5226 -0.0005 12 6 7.0568 6.4455 -0.0005 13 6 7.5659 6.4173 1.4425 14 6 9.0933 6.3007 1.4386 15 7 9.6485 7.3904 0.6243 16 6 10.6029 8.2279 1.1369 17 1 10.6490 8.4071 2.2009 18 6 11.5112 8.8466 0.2888 19 7 12.1463 9.9301 0.6825 20 14 11.8321 8.1414 -1.4108 21 1 10.9372 8.7991 -2.3966 22 1 13.2476 8.3841 -1.7883 23 1 11.5666 6.6804 -1.3988 24 6 9.1605 7.5639 -0.7507 25 6 7.6323 7.6661 -0.7223 26 6 2.6818 3.2744 -1.1906 27 6 2.9173 3.9600 -2.5118 28 7 2.2466 2.0253 -1.1514 29 1 -0.3635 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 2.0196 4.4637 2.8301 35 1 3.2120 3.2134 3.2582 36 1 3.7331 4.6843 2.4019 37 1 3.0644 5.8761 -0.8900 38 1 3.0652 5.8759 0.8899 39 1 7.3721 5.5374 -0.5146 40 1 7.2722 7.3362 1.9498 41 1 7.1371 5.5609 1.9629 42 1 9.3857 5.3408 1.0128 43 1 9.4704 6.3780 2.4584 44 1 12.7813 10.3623 0.0901 45 1 9.4583 6.7071 -1.3550 46 1 9.5798 8.4753 -1.1771 47 1 7.2508 7.6986 -1.7429 48 1 7.3380 8.5731 -0.1943 49 1 3.9428 3.7823 -2.8356 50 1 2.2273 3.5618 -3.2558 51 1 2.7522 5.0315 -2.3997 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892864313.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:05:16 Heat of formation + Delta-G solvation = -30.969161 kcal Electronic energy + Delta-G solvation = -30994.027353 eV Core-core repulsion = 26893.837650 eV Total energy + Delta-G solvation = -4100.189704 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.73387 -40.45256 -37.92223 -36.26999 -35.58584 -35.13289 -32.96859 -32.63138 -30.74327 -30.47971 -29.77372 -29.57461 -27.32536 -25.41163 -24.53702 -23.07979 -22.25133 -22.06944 -21.54498 -20.59838 -19.68499 -18.44676 -17.83842 -17.11530 -16.35015 -16.06886 -16.00103 -15.52069 -15.25616 -14.64152 -14.51559 -14.26306 -14.01030 -13.94048 -13.84500 -13.71617 -13.55441 -13.30353 -13.24562 -12.96550 -12.89512 -12.69854 -12.46852 -12.35139 -12.14328 -12.07294 -12.03635 -11.90627 -11.44127 -11.37428 -11.02510 -10.91745 -10.84799 -10.63016 -10.50582 -10.50019 -10.18639 -9.93167 -9.80809 -9.47888 -9.46139 -9.40013 -8.70410 -7.08328 -6.00420 -3.37308 0.53397 0.81646 2.13854 2.66707 3.26475 3.42376 3.44924 3.47271 3.53056 3.71142 4.01697 4.23383 4.37383 4.47164 4.62432 4.73503 4.79333 4.86119 4.91160 4.93896 4.99586 5.05694 5.07047 5.13749 5.18050 5.19353 5.24281 5.29162 5.32517 5.47798 5.49514 5.50360 5.57765 5.65945 5.70086 5.76155 5.81160 5.91840 6.02752 6.06976 6.17067 6.20523 6.26164 6.48472 6.51876 6.57847 6.61374 6.77974 6.86492 7.75072 7.87406 7.88361 8.26881 8.86208 9.65074 10.01247 11.15272 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.023731 B = 0.002204 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.612471 B =12700.407778 C =13050.967615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.055 4.055 3 C 0.329 3.671 4 N -0.522 5.522 5 C 0.199 3.801 6 C -0.112 4.112 7 C -0.190 4.190 8 C -0.069 4.069 9 C 0.459 3.541 10 O -0.502 6.502 11 O -0.353 6.353 12 C 0.098 3.902 13 C -0.147 4.147 14 C 0.152 3.848 15 N -0.605 5.605 16 C -0.262 4.262 17 H 0.087 0.913 18 C 0.024 3.976 19 N -0.905 5.905 20 Si 0.880 3.120 21 H -0.287 1.287 22 H -0.301 1.301 23 H -0.270 1.270 24 C 0.129 3.871 25 C -0.129 4.129 26 C 0.197 3.803 27 C -0.114 4.114 28 N -0.522 5.522 29 H 0.067 0.933 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.058 0.942 42 H 0.026 0.974 43 H 0.071 0.929 44 H 0.263 0.737 45 H 0.028 0.972 46 H 0.082 0.918 47 H 0.062 0.938 48 H 0.078 0.922 49 H 0.089 0.911 50 H 0.085 0.915 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.309 -13.418 -2.430 28.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.094 4.094 3 C 0.061 3.939 4 N -0.237 5.237 5 C 0.053 3.947 6 C -0.169 4.169 7 C -0.194 4.194 8 C -0.108 4.108 9 C 0.301 3.699 10 O -0.389 6.389 11 O -0.270 6.270 12 C 0.044 3.956 13 C -0.187 4.187 14 C 0.026 3.974 15 N -0.329 5.329 16 C -0.390 4.390 17 H 0.105 0.895 18 C -0.175 4.175 19 N -0.548 5.548 20 Si 0.710 3.290 21 H -0.215 1.215 22 H -0.229 1.229 23 H -0.195 1.195 24 C 0.003 3.997 25 C -0.168 4.168 26 C 0.052 3.948 27 C -0.171 4.171 28 N -0.237 5.237 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.108 0.892 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.106 0.894 36 H 0.098 0.902 37 H 0.138 0.862 38 H 0.137 0.863 39 H 0.097 0.903 40 H 0.092 0.908 41 H 0.077 0.923 42 H 0.044 0.956 43 H 0.089 0.911 44 H 0.073 0.927 45 H 0.046 0.954 46 H 0.100 0.900 47 H 0.081 0.919 48 H 0.097 0.903 49 H 0.107 0.893 50 H 0.104 0.896 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -25.241 -14.515 -2.437 29.219 hybrid contribution 0.738 0.485 -1.008 1.340 sum -24.503 -14.030 -3.445 28.445 Atomic orbital electron populations 1.21677 0.93511 1.02488 1.02344 1.20350 0.96742 0.88053 1.04285 1.23191 0.90393 0.97033 0.83239 1.68104 1.15390 1.09692 1.30490 1.21546 0.88517 0.89241 0.95363 1.20851 1.02954 1.00727 0.92362 1.20641 1.06093 0.97672 0.94980 1.20181 0.89131 0.94206 1.07278 1.23320 0.90950 0.82582 0.73074 1.90689 1.70402 1.33044 1.44787 1.86549 1.23773 1.33639 1.83056 1.22897 0.73838 1.00505 0.98316 1.22457 0.99385 1.02070 0.94762 1.20879 0.89470 0.90572 0.96518 1.44421 1.45086 1.32924 1.10446 1.18919 1.06328 1.19209 0.94564 0.89498 1.25287 0.97109 0.97169 0.97933 1.69831 1.29785 1.17795 1.37382 0.86994 0.76388 0.80322 0.85280 1.21505 1.22942 1.19533 1.21373 0.90379 1.00276 0.87709 1.22244 0.98113 0.97072 0.99410 1.21528 0.88655 0.89295 0.95346 1.20887 1.04026 0.99864 0.92301 1.68102 1.15521 1.09585 1.30499 0.91400 0.92347 0.92362 0.89166 0.89143 0.89247 0.89431 0.90234 0.86229 0.86259 0.90266 0.90772 0.92284 0.95627 0.91067 0.92675 0.95427 0.90000 0.91886 0.90339 0.89259 0.89580 0.89911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 9.89 37.16 0.37 -0.60 16 2 C -0.06 -0.47 6.37 -27.89 -0.18 -0.65 16 3 C 0.33 3.88 6.90 -157.19 -1.08 2.79 16 4 N -0.52 -6.42 10.27 -6.99 -0.07 -6.49 16 5 C 0.20 2.26 6.82 -82.24 -0.56 1.69 16 6 C -0.11 -0.95 9.46 36.01 0.34 -0.61 16 7 C -0.19 -2.06 4.41 -104.36 -0.46 -2.52 16 8 C -0.07 -0.62 4.93 -29.04 -0.14 -0.76 16 9 C 0.46 5.98 7.62 36.01 0.27 6.25 16 10 O -0.50 -8.21 15.25 -18.75 -0.29 -8.49 16 11 O -0.35 -5.05 9.88 -39.27 -0.39 -5.43 16 12 C 0.10 1.63 2.42 -26.69 -0.06 1.56 16 13 C -0.15 -2.50 5.72 -26.61 -0.15 -2.65 16 14 C 0.15 3.00 6.52 -3.71 -0.02 2.98 16 15 N -0.61 -14.18 2.77 -172.32 -0.48 -14.66 16 16 C -0.26 -7.20 10.04 -15.06 -0.15 -7.35 16 17 H 0.09 2.54 8.06 -52.49 -0.42 2.12 16 18 C 0.02 0.69 5.23 -17.43 -0.09 0.60 16 19 N -0.91 -27.33 13.97 55.49 0.78 -26.56 16 20 Si 0.88 21.99 24.35 -169.99 -4.14 17.85 16 21 H -0.29 -6.85 6.62 56.52 0.37 -6.48 16 22 H -0.30 -7.68 7.11 56.52 0.40 -7.28 16 23 H -0.27 -6.68 6.63 56.52 0.37 -6.31 16 24 C 0.13 2.75 4.20 -3.71 -0.02 2.73 16 25 C -0.13 -2.25 5.74 -26.61 -0.15 -2.41 16 26 C 0.20 2.22 6.82 -82.24 -0.56 1.66 16 27 C -0.11 -0.94 9.84 36.01 0.35 -0.59 16 28 N -0.52 -6.41 10.27 -6.99 -0.07 -6.48 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.08 0.67 6.55 -51.93 -0.34 0.33 16 37 H 0.12 0.76 6.08 -51.93 -0.32 0.45 16 38 H 0.12 0.78 6.82 -51.93 -0.35 0.43 16 39 H 0.08 1.39 7.16 -51.92 -0.37 1.02 16 40 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 41 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 42 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.07 1.38 7.93 -51.93 -0.41 0.97 16 44 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 45 H 0.03 0.59 7.08 -51.93 -0.37 0.22 16 46 H 0.08 1.89 4.50 -51.93 -0.23 1.66 16 47 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 48 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 49 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 50 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 51 H 0.08 0.50 6.08 -51.93 -0.32 0.18 16 LS Contribution 402.59 15.07 6.07 6.07 Total: -1.00 -33.94 402.59 -9.13 -43.07 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -8.24 Total: -1.02 kcal Atomic # 6 Polarization: 4.44 SS G_CDS: -2.30 Total: 2.14 kcal Atomic # 7 Polarization: -54.34 SS G_CDS: 0.15 Total: -54.19 kcal Atomic # 8 Polarization: -13.25 SS G_CDS: -0.67 Total: -13.93 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.14 Total: 17.85 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.94 -9.13 -43.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892864313.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.102 kcal (2) G-P(sol) polarization free energy of solvation -33.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds