Wall clock time and date at job start Wed Apr 1 2020 06:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50699 * 109.47386 * 2 1 4 4 N 1.31792 * 119.12453 * 89.99946 * 3 2 1 5 5 C 1.32333 * 120.81606 * 179.97438 * 4 3 2 6 6 C 1.50705 * 120.44768 * 180.02562 * 5 4 3 7 7 C 1.38597 * 119.10863 * 0.02562 * 5 4 3 8 8 C 1.50695 * 120.80378 * 180.02562 * 7 5 4 9 9 C 1.50700 * 109.47062 * 89.99681 * 8 7 5 10 10 O 1.20829 * 120.00349 * 359.97438 * 9 8 7 11 11 O 1.34237 * 119.99951 * 180.02562 * 9 8 7 12 12 C 1.45200 * 117.00100 * 179.97438 * 11 9 8 13 13 C 1.53045 * 109.45918 * 270.02790 * 12 11 9 14 14 C 1.53188 * 109.31067 * 178.60219 * 13 12 11 15 15 N 1.46925 * 108.76678 * 54.65299 * 14 13 12 16 16 C 1.36935 * 120.63076 * 126.40781 * 15 14 13 17 17 H 1.07998 * 120.00000 * 332.60852 * 16 15 14 18 18 C 1.38817 * 119.99981 * 152.60751 * 16 15 14 19 19 N 1.31616 * 119.99809 * 159.34494 * 18 16 15 20 20 Si 1.86795 * 119.99867 * 339.34184 * 18 16 15 21 21 H 1.48500 * 109.46968 * 92.94744 * 20 18 16 22 22 H 1.48500 * 109.47001 * 212.94340 * 20 18 16 23 23 H 1.48493 * 109.47326 * 332.94074 * 20 18 16 24 24 C 1.46928 * 118.73770 * 306.38128 * 15 14 13 25 25 C 1.53037 * 109.46035 * 149.96879 * 12 11 9 26 26 C 1.38602 * 118.39594 * 0.26755 * 7 5 4 27 27 C 1.50701 * 120.44493 * 179.72746 * 26 7 5 28 28 N 1.31799 * 119.11660 * 269.97593 * 3 2 1 29 29 H 1.09002 * 109.47745 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46978 * 300.00332 * 1 2 3 31 31 H 1.09000 * 109.47036 * 59.99558 * 1 2 3 32 32 H 1.08996 * 109.47087 * 239.99499 * 2 1 3 33 33 H 1.09006 * 109.46851 * 120.00069 * 2 1 3 34 34 H 1.08998 * 109.46875 * 269.98411 * 6 5 4 35 35 H 1.09000 * 109.46835 * 29.97755 * 6 5 4 36 36 H 1.08991 * 109.47260 * 149.97891 * 6 5 4 37 37 H 1.09000 * 109.47026 * 209.99662 * 8 7 5 38 38 H 1.08999 * 109.47189 * 329.99843 * 8 7 5 39 39 H 1.09008 * 109.45656 * 29.99590 * 12 11 9 40 40 H 1.08997 * 109.49121 * 298.56576 * 13 12 11 41 41 H 1.08996 * 109.49982 * 58.65803 * 13 12 11 42 42 H 1.09007 * 109.59875 * 294.86267 * 14 13 12 43 43 H 1.09000 * 109.70361 * 174.50608 * 14 13 12 44 44 H 0.97001 * 120.00044 * 179.97438 * 19 18 16 45 45 H 1.09001 * 109.58694 * 293.82463 * 24 15 14 46 46 H 1.09003 * 109.70201 * 173.46777 * 24 15 14 47 47 H 1.09001 * 109.50102 * 301.33891 * 25 12 11 48 48 H 1.09003 * 109.49268 * 61.43494 * 25 12 11 49 49 H 1.08995 * 109.47108 * 90.00952 * 27 26 7 50 50 H 1.09007 * 109.46728 * 209.99958 * 27 26 7 51 51 H 1.08993 * 109.47343 * 330.00080 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2462 2.0255 1.1513 5 6 2.6876 3.2724 1.1903 6 6 2.9299 3.9558 2.5115 7 6 2.9242 3.9415 -0.0001 8 6 3.4277 5.3619 -0.0002 9 6 4.9347 5.3606 -0.0008 10 8 5.5381 4.3138 -0.0007 11 8 5.6068 6.5226 -0.0005 12 6 7.0568 6.4455 -0.0005 13 6 7.5659 6.4173 1.4425 14 6 9.0933 6.3007 1.4386 15 7 9.6485 7.3904 0.6243 16 6 10.6029 8.2279 1.1369 17 1 10.6490 8.4071 2.2009 18 6 11.5112 8.8466 0.2888 19 7 12.1463 9.9301 0.6825 20 14 11.8321 8.1414 -1.4108 21 1 10.9372 8.7991 -2.3966 22 1 13.2476 8.3841 -1.7883 23 1 11.5666 6.6804 -1.3988 24 6 9.1605 7.5639 -0.7507 25 6 7.6323 7.6661 -0.7223 26 6 2.6818 3.2744 -1.1906 27 6 2.9173 3.9600 -2.5118 28 7 2.2466 2.0253 -1.1514 29 1 -0.3635 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 2.0196 4.4637 2.8301 35 1 3.2120 3.2134 3.2582 36 1 3.7331 4.6843 2.4019 37 1 3.0644 5.8761 -0.8900 38 1 3.0652 5.8759 0.8899 39 1 7.3721 5.5374 -0.5146 40 1 7.2722 7.3362 1.9498 41 1 7.1371 5.5609 1.9629 42 1 9.3857 5.3408 1.0128 43 1 9.4704 6.3780 2.4584 44 1 12.7813 10.3623 0.0901 45 1 9.4583 6.7071 -1.3550 46 1 9.5798 8.4753 -1.1771 47 1 7.2508 7.6986 -1.7429 48 1 7.3380 8.5731 -0.1943 49 1 3.9428 3.7823 -2.8356 50 1 2.2273 3.5618 -3.2558 51 1 2.7522 5.0315 -2.3997 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892864313.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:05:15 Heat of formation + Delta-G solvation = -51.032797 kcal Electronic energy + Delta-G solvation = -30994.897378 eV Core-core repulsion = 26893.837650 eV Total energy + Delta-G solvation = -4101.059728 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.54981 -41.55171 -39.37986 -37.51865 -36.42247 -35.89818 -34.65233 -33.53794 -32.44092 -32.07183 -30.49735 -30.35081 -28.09000 -27.00134 -25.49233 -24.61055 -23.72387 -22.81234 -22.54042 -21.57838 -21.22315 -19.23428 -18.96151 -18.89633 -17.59345 -17.22508 -17.00449 -16.73986 -16.33677 -16.00900 -15.58564 -15.45487 -15.19821 -15.05830 -14.79869 -14.63178 -14.47643 -14.46475 -14.26290 -14.11612 -13.98713 -13.85208 -13.60850 -13.54686 -13.40716 -12.98081 -12.83030 -12.69439 -12.64779 -12.58725 -12.43996 -12.21256 -12.05502 -12.03884 -11.77186 -11.66940 -11.64363 -11.45520 -11.30595 -11.13103 -10.75271 -10.28098 -10.18835 -9.03155 -8.18238 -5.51836 -0.27325 0.01787 1.13909 1.27899 1.41330 1.49165 1.62387 2.39290 2.60916 2.82867 2.98216 3.01283 3.25584 3.31019 3.46932 3.66386 3.68734 3.72519 3.77854 4.01669 4.06494 4.16705 4.20831 4.30219 4.32094 4.35281 4.37573 4.46031 4.54071 4.57344 4.61124 4.62887 4.64670 4.68255 4.73446 4.84100 4.86692 4.89028 4.94927 4.96102 4.96656 5.04887 5.11076 5.11438 5.24177 5.25792 5.47217 5.55879 5.83297 5.99035 6.10489 6.69685 6.85995 7.06605 7.56932 7.96803 9.01207 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.023731 B = 0.002204 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.612471 B =12700.407778 C =13050.967615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.056 4.056 3 C 0.313 3.687 4 N -0.542 5.542 5 C 0.184 3.816 6 C -0.110 4.110 7 C -0.198 4.198 8 C -0.061 4.061 9 C 0.462 3.538 10 O -0.537 6.537 11 O -0.346 6.346 12 C 0.105 3.895 13 C -0.136 4.136 14 C 0.148 3.852 15 N -0.619 5.619 16 C -0.251 4.251 17 H 0.055 0.945 18 C -0.032 4.032 19 N -0.953 5.953 20 Si 0.942 3.058 21 H -0.267 1.267 22 H -0.310 1.310 23 H -0.265 1.265 24 C 0.122 3.878 25 C -0.119 4.119 26 C 0.182 3.818 27 C -0.112 4.112 28 N -0.542 5.542 29 H 0.088 0.912 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.115 0.885 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.152 0.848 38 H 0.149 0.851 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.031 0.969 43 H 0.066 0.934 44 H 0.263 0.737 45 H 0.034 0.966 46 H 0.064 0.936 47 H 0.092 0.908 48 H 0.073 0.927 49 H 0.081 0.919 50 H 0.093 0.907 51 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.820 -13.975 -3.641 31.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.095 4.095 3 C 0.046 3.954 4 N -0.258 5.258 5 C 0.038 3.962 6 C -0.166 4.166 7 C -0.202 4.202 8 C -0.098 4.098 9 C 0.306 3.694 10 O -0.426 6.426 11 O -0.263 6.263 12 C 0.050 3.950 13 C -0.175 4.175 14 C 0.023 3.977 15 N -0.344 5.344 16 C -0.380 4.380 17 H 0.073 0.927 18 C -0.227 4.227 19 N -0.598 5.598 20 Si 0.770 3.230 21 H -0.194 1.194 22 H -0.239 1.239 23 H -0.190 1.190 24 C -0.003 4.003 25 C -0.158 4.158 26 C 0.037 3.963 27 C -0.169 4.169 28 N -0.258 5.258 29 H 0.107 0.893 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.113 0.887 33 H 0.112 0.888 34 H 0.133 0.867 35 H 0.101 0.899 36 H 0.100 0.900 37 H 0.169 0.831 38 H 0.166 0.834 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.049 0.951 43 H 0.085 0.915 44 H 0.072 0.928 45 H 0.052 0.948 46 H 0.082 0.918 47 H 0.110 0.890 48 H 0.092 0.908 49 H 0.100 0.900 50 H 0.111 0.889 51 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -27.805 -15.094 -3.658 31.849 hybrid contribution 1.443 0.584 -0.538 1.647 sum -26.362 -14.510 -4.197 30.383 Atomic orbital electron populations 1.21622 0.92236 1.03661 1.01652 1.20467 0.97757 0.86614 1.04648 1.23764 0.90221 0.98159 0.83230 1.68160 1.16339 1.10466 1.30804 1.22080 0.88103 0.89226 0.96778 1.20925 1.04205 1.00561 0.90957 1.20825 1.06159 0.98604 0.94641 1.20329 0.85657 0.93638 1.10217 1.24093 0.92286 0.81493 0.71511 1.90694 1.71348 1.34112 1.46452 1.86552 1.22144 1.34342 1.83247 1.22578 0.75428 0.99575 0.97412 1.22275 0.97007 1.02586 0.95621 1.21001 0.91384 0.89583 0.95780 1.44531 1.44727 1.33480 1.11655 1.18848 1.06940 1.18890 0.93359 0.92705 1.25891 0.97430 0.97483 1.01932 1.69955 1.31293 1.19451 1.39150 0.85986 0.75823 0.79737 0.81407 1.19357 1.23903 1.18992 1.21411 0.93099 0.99517 0.86312 1.22037 0.95172 0.97265 1.01360 1.22084 0.88176 0.89245 0.96795 1.20979 1.03630 1.01219 0.91080 1.68166 1.16442 1.10394 1.30776 0.89283 0.92996 0.92977 0.88739 0.88751 0.86722 0.89936 0.89983 0.83081 0.83355 0.91011 0.91003 0.90796 0.95093 0.91539 0.92835 0.94773 0.91836 0.88969 0.90789 0.90037 0.88860 0.87342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.69 9.89 71.98 0.71 -0.98 16 2 C -0.06 -0.92 6.37 29.85 0.19 -0.73 16 3 C 0.31 7.23 6.90 138.75 0.96 8.19 16 4 N -0.54 -12.96 10.27 -176.02 -1.81 -14.77 16 5 C 0.18 3.87 6.82 42.57 0.29 4.16 16 6 C -0.11 -1.62 9.46 71.24 0.67 -0.94 16 7 C -0.20 -3.85 4.41 -19.69 -0.09 -3.93 16 8 C -0.06 -0.85 4.93 29.10 0.14 -0.70 16 9 C 0.46 10.58 7.62 71.24 0.54 11.12 16 10 O -0.54 -16.43 15.25 21.95 0.33 -16.10 16 11 O -0.35 -8.67 9.88 -51.48 -0.51 -9.17 16 12 C 0.10 3.18 2.42 30.62 0.07 3.25 16 13 C -0.14 -4.34 5.72 30.67 0.18 -4.16 16 14 C 0.15 5.71 6.52 86.36 0.56 6.27 16 15 N -0.62 -28.69 2.77 -699.09 -1.94 -30.62 16 16 C -0.25 -14.03 10.04 84.04 0.84 -13.18 16 17 H 0.06 3.34 8.06 -2.91 -0.02 3.32 16 18 C -0.03 -1.86 5.23 84.86 0.44 -1.41 16 19 N -0.95 -59.00 13.97 21.65 0.30 -58.70 16 20 Si 0.94 45.60 24.35 68.60 1.67 47.27 16 21 H -0.27 -11.95 6.62 99.48 0.66 -11.30 16 22 H -0.31 -15.35 7.11 99.48 0.71 -14.64 16 23 H -0.27 -12.46 6.63 99.48 0.66 -11.80 16 24 C 0.12 4.98 4.20 86.36 0.36 5.34 16 25 C -0.12 -3.84 5.74 30.67 0.18 -3.66 16 26 C 0.18 3.80 6.82 42.57 0.29 4.09 16 27 C -0.11 -1.59 9.84 71.24 0.70 -0.89 16 28 N -0.54 -12.90 10.27 -176.02 -1.81 -14.71 16 29 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 31 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.09 1.43 8.14 -2.38 -0.02 1.41 16 34 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.08 1.16 6.55 -2.39 -0.02 1.14 16 37 H 0.15 1.18 6.08 -2.39 -0.01 1.17 16 38 H 0.15 1.26 6.82 -2.39 -0.02 1.25 16 39 H 0.07 2.34 7.16 -2.38 -0.02 2.32 16 40 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 41 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 42 H 0.03 1.17 8.14 -2.38 -0.02 1.16 16 43 H 0.07 2.58 7.93 -2.39 -0.02 2.56 16 44 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 45 H 0.03 1.36 7.08 -2.39 -0.02 1.35 16 46 H 0.06 2.83 4.50 -2.39 -0.01 2.82 16 47 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 48 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 49 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 50 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 51 H 0.11 0.90 6.08 -2.39 -0.01 0.88 16 Total: -1.00 -75.19 402.59 4.13 -71.06 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: 0.83 Total: 13.91 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: 7.05 Total: 11.83 kcal Atomic # 7 Polarization: -113.54 SS G_CDS: -5.25 Total: -118.79 kcal Atomic # 8 Polarization: -25.10 SS G_CDS: -0.17 Total: -25.27 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 1.67 Total: 47.27 kcal Total: -75.19 4.13 -71.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892864313.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.029 kcal (2) G-P(sol) polarization free energy of solvation -75.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds