Wall clock time and date at job start Wed Apr 1 2020 04:23:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50706 * 109.46964 * 2 1 4 4 N 1.31910 * 119.40371 * 90.00280 * 3 2 1 5 5 C 1.32207 * 121.79738 * 179.97438 * 4 3 2 6 6 O 1.35421 * 119.80208 * 180.02562 * 5 4 3 7 7 C 1.40324 * 120.39831 * 359.97438 * 5 4 3 8 8 C 1.47531 * 120.59474 * 180.02562 * 7 5 4 9 9 O 1.21583 * 120.00159 * 0.02562 * 8 7 5 10 10 N 1.34778 * 119.99576 * 179.97438 * 8 7 5 11 11 C 1.46500 * 119.99894 * 180.02562 * 10 8 7 12 12 C 1.52992 * 109.47361 * 180.02562 * 11 10 8 13 13 H 1.09003 * 109.49977 * 305.06519 * 12 11 10 14 14 C 1.53040 * 109.49986 * 184.99895 * 12 11 10 15 15 C 1.53036 * 109.53770 * 178.68160 * 14 12 11 16 16 C 1.53192 * 109.31423 * 61.37064 * 15 14 12 17 17 N 1.46933 * 108.77179 * 305.36248 * 16 15 14 18 18 C 1.36940 * 120.62635 * 233.58772 * 17 16 15 19 19 H 1.08000 * 119.99486 * 151.83814 * 18 17 16 20 20 C 1.38802 * 120.00441 * 331.83198 * 18 17 16 21 21 N 1.31627 * 119.99795 * 343.08346 * 20 18 17 22 22 Si 1.86802 * 120.00453 * 163.08345 * 20 18 17 23 23 H 1.48501 * 109.47149 * 89.99760 * 22 20 18 24 24 H 1.48496 * 109.47273 * 210.00169 * 22 20 18 25 25 H 1.48503 * 109.46808 * 330.00136 * 22 20 18 26 26 C 1.46922 * 118.73828 * 53.60988 * 17 16 15 27 27 C 1.39945 * 118.80691 * 0.02562 * 7 5 4 28 28 C 1.38309 * 119.40535 * 269.73056 * 3 2 1 29 29 C 1.50705 * 120.26904 * 359.97438 * 28 3 2 30 30 H 1.09002 * 109.46997 * 59.99879 * 1 2 3 31 31 H 1.08996 * 109.47196 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47073 * 300.00399 * 1 2 3 33 33 H 1.08997 * 109.47236 * 240.00035 * 2 1 3 34 34 H 1.09002 * 109.46660 * 119.99419 * 2 1 3 35 35 H 0.96699 * 114.00400 * 89.99827 * 6 5 4 36 36 H 0.96996 * 120.00097 * 0.02562 * 10 8 7 37 37 H 1.08998 * 109.46954 * 300.00808 * 11 10 8 38 38 H 1.09005 * 109.46788 * 59.99684 * 11 10 8 39 39 H 1.08997 * 109.45822 * 298.70438 * 14 12 11 40 40 H 1.09004 * 109.45781 * 58.67917 * 14 12 11 41 41 H 1.09006 * 109.49804 * 181.31732 * 15 14 12 42 42 H 1.09000 * 109.49901 * 301.37986 * 15 14 12 43 43 H 1.08997 * 109.58962 * 65.14637 * 16 15 14 44 44 H 1.08998 * 109.58567 * 185.58020 * 16 15 14 45 45 H 0.97005 * 119.99607 * 180.02562 * 21 20 18 46 46 H 1.09005 * 109.58392 * 186.60743 * 26 17 16 47 47 H 1.08994 * 109.59233 * 66.17736 * 26 17 16 48 48 H 1.07995 * 120.82971 * 180.02562 * 27 7 5 49 49 H 1.08995 * 109.46837 * 90.00381 * 29 28 3 50 50 H 1.09002 * 109.46815 * 210.00377 * 29 28 3 51 51 H 1.08999 * 109.47422 * 330.00110 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.2483 2.0315 1.1492 5 6 2.6890 3.2767 1.2044 6 8 2.8973 3.8642 2.4066 7 6 2.9433 3.9929 0.0248 8 6 3.4358 5.3824 0.0813 9 8 3.6253 5.9169 1.1568 10 7 3.6765 6.0589 -1.0592 11 6 4.1660 7.4385 -1.0031 12 6 4.3551 7.9708 -2.4250 13 1 5.0093 7.2992 -2.9809 14 6 4.9833 9.3653 -2.3691 15 6 5.2031 9.8850 -3.7916 16 6 3.8524 9.9916 -4.5064 17 7 3.1769 8.6885 -4.4377 18 6 2.7253 8.0759 -5.5761 19 1 2.6566 6.9990 -5.6188 20 6 2.3557 8.8390 -6.6751 21 7 2.1173 10.1257 -6.5327 22 14 2.1965 8.0401 -8.3561 23 1 0.8070 7.5501 -8.5417 24 1 2.5148 9.0367 -9.4100 25 1 3.1411 6.8984 -8.4529 26 6 2.9947 8.0557 -3.1243 27 6 2.7214 3.3653 -1.2062 28 6 2.2640 2.0592 -1.2049 29 6 2.0167 1.3396 -2.5057 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 3.7906 3.7401 2.7556 36 1 3.5257 5.6323 -1.9172 37 1 3.4419 8.0598 -0.4762 38 1 5.1193 7.4646 -0.4752 39 1 4.3175 10.0422 -1.8339 40 1 5.9405 9.3118 -1.8503 41 1 5.6719 10.8682 -3.7514 42 1 5.8495 9.1957 -4.3350 43 1 3.2385 10.7476 -4.0169 44 1 4.0115 10.2660 -5.5492 45 1 1.8587 10.6589 -7.3007 46 1 2.5880 7.0529 -3.2552 47 1 2.3110 8.6538 -2.5221 48 1 2.9067 3.8858 -2.1342 49 1 0.9882 1.5083 -2.8244 50 1 2.6996 1.7187 -3.2661 51 1 2.1837 0.2714 -2.3675 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000895410744.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:43 Heat of formation + Delta-G solvation = -37.662475 kcal Electronic energy + Delta-G solvation = -30827.369250 eV Core-core repulsion = 26726.889303 eV Total energy + Delta-G solvation = -4100.479947 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.19832 -39.36703 -37.92391 -37.48830 -34.87760 -34.32258 -33.63437 -32.97556 -31.16857 -30.48549 -30.00504 -27.07913 -25.99007 -25.34562 -24.91124 -22.77484 -22.40795 -22.04633 -20.99627 -20.38447 -19.15850 -18.83540 -17.54603 -17.34412 -16.64770 -15.99542 -15.53450 -15.36475 -15.07471 -14.86792 -14.52432 -14.26638 -14.16179 -14.02670 -13.74612 -13.52483 -13.43829 -13.17272 -12.91119 -12.82234 -12.59664 -12.41530 -12.34721 -12.21854 -12.13526 -11.78794 -11.67451 -11.33527 -11.25066 -11.06306 -10.74838 -10.55031 -10.30900 -10.24425 -10.20389 -10.07454 -9.96994 -9.71451 -9.47879 -9.46560 -9.05516 -8.83385 -8.51394 -6.71854 -5.83997 -3.27271 0.33513 0.81380 2.71523 3.08403 3.28992 3.32261 3.39705 3.40963 3.55104 4.15786 4.29712 4.39722 4.43159 4.52295 4.77227 4.88180 4.93353 5.04826 5.07410 5.19544 5.25194 5.26685 5.37300 5.39154 5.41712 5.47933 5.52322 5.57653 5.65949 5.66717 5.79307 5.86191 5.87703 5.92780 5.96416 6.18297 6.19394 6.28152 6.33185 6.44125 6.54479 6.66106 6.72609 6.81855 6.91712 7.32100 7.35768 7.49189 7.62094 7.63057 7.72928 8.19550 8.39438 9.15549 9.79101 10.36217 11.24295 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010745 B = 0.002796 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2605.129267 B =10012.080279 C =12234.979513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.081 4.081 3 C 0.175 3.825 4 N -0.504 5.504 5 C 0.366 3.634 6 O -0.459 6.459 7 C -0.203 4.203 8 C 0.560 3.440 9 O -0.525 6.525 10 N -0.719 5.719 11 C 0.128 3.872 12 C -0.118 4.118 13 H 0.073 0.927 14 C -0.100 4.100 15 C -0.141 4.141 16 C 0.169 3.831 17 N -0.591 5.591 18 C -0.255 4.255 19 H 0.064 0.936 20 C 0.003 3.997 21 N -0.901 5.901 22 Si 0.901 3.099 23 H -0.287 1.287 24 H -0.289 1.289 25 H -0.279 1.279 26 C 0.154 3.846 27 C -0.027 4.027 28 C -0.152 4.152 29 C -0.113 4.113 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.403 0.597 36 H 0.400 0.600 37 H 0.068 0.932 38 H 0.064 0.936 39 H 0.057 0.943 40 H 0.047 0.953 41 H 0.050 0.950 42 H 0.054 0.946 43 H 0.018 0.982 44 H 0.086 0.914 45 H 0.254 0.746 46 H 0.048 0.952 47 H 0.019 0.981 48 H 0.145 0.855 49 H 0.078 0.922 50 H 0.073 0.927 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.275 -17.725 10.851 21.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.119 4.119 3 C 0.037 3.963 4 N -0.222 5.222 5 C 0.186 3.814 6 O -0.266 6.266 7 C -0.209 4.209 8 C 0.346 3.654 9 O -0.402 6.402 10 N -0.371 5.371 11 C 0.005 3.995 12 C -0.139 4.139 13 H 0.091 0.909 14 C -0.138 4.138 15 C -0.181 4.181 16 C 0.043 3.957 17 N -0.314 5.314 18 C -0.385 4.385 19 H 0.082 0.918 20 C -0.195 4.195 21 N -0.545 5.545 22 Si 0.731 3.269 23 H -0.214 1.214 24 H -0.215 1.215 25 H -0.205 1.205 26 C 0.027 3.973 27 C -0.053 4.053 28 C -0.154 4.154 29 C -0.170 4.170 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.107 0.893 34 H 0.103 0.897 35 H 0.262 0.738 36 H 0.236 0.764 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.066 0.934 41 H 0.069 0.931 42 H 0.072 0.928 43 H 0.036 0.964 44 H 0.104 0.896 45 H 0.064 0.936 46 H 0.067 0.933 47 H 0.037 0.963 48 H 0.163 0.837 49 H 0.096 0.904 50 H 0.092 0.908 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.654 -17.381 12.253 21.431 hybrid contribution 0.407 -0.023 -1.946 1.988 sum 3.061 -17.404 10.308 20.457 Atomic orbital electron populations 1.21701 0.93630 1.02346 1.02678 1.20655 0.96942 0.90253 1.04020 1.21077 0.92293 0.96264 0.86713 1.67110 1.15043 1.09931 1.30163 1.19098 0.91003 0.86246 0.85093 1.84731 1.36981 1.73022 1.31874 1.21153 1.08443 0.97062 0.94268 1.17790 0.78184 0.84924 0.84490 1.90800 1.51758 1.69209 1.28437 1.45981 1.67312 1.15417 1.08363 1.21497 0.99200 0.80683 0.98151 1.21964 1.00954 0.97499 0.93446 0.90877 1.21339 0.99093 0.95356 0.97984 1.22170 1.01130 0.99273 0.95500 1.20801 0.87892 0.86541 1.00439 1.44033 1.65674 1.20786 1.00857 1.19120 1.38069 0.90608 0.90691 0.91838 1.25050 0.99135 0.96047 0.99305 1.70040 1.49033 1.05962 1.29437 0.86325 0.77892 0.78481 0.84222 1.21379 1.21529 1.20488 1.20893 0.91929 0.96637 0.87822 1.21695 0.92683 0.93633 0.97278 1.20640 1.02698 0.95025 0.97009 1.20842 1.03022 1.00218 0.92923 0.92289 0.91650 0.92149 0.89320 0.89709 0.73753 0.76414 0.91353 0.91767 0.92411 0.93395 0.93150 0.92761 0.96414 0.89567 0.93580 0.93337 0.96293 0.83700 0.90375 0.90790 0.90622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.90 37.16 0.37 -0.60 16 2 C -0.08 -0.57 5.81 -27.88 -0.16 -0.73 16 3 C 0.18 1.76 6.03 -82.53 -0.50 1.26 16 4 N -0.50 -6.28 10.28 -9.21 -0.09 -6.37 16 5 C 0.37 4.87 7.77 -16.61 -0.13 4.74 16 6 O -0.46 -6.09 11.66 -39.72 -0.46 -6.55 16 7 C -0.20 -2.59 5.90 -104.69 -0.62 -3.20 16 8 C 0.56 8.16 7.77 -12.47 -0.10 8.06 16 9 O -0.52 -9.14 15.19 -16.47 -0.25 -9.39 16 10 N -0.72 -9.57 5.29 -61.35 -0.32 -9.90 16 11 C 0.13 1.83 5.07 -4.05 -0.02 1.81 16 12 C -0.12 -1.87 2.37 -90.50 -0.21 -2.09 16 13 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 14 C -0.10 -1.59 5.17 -26.69 -0.14 -1.73 16 15 C -0.14 -2.59 6.08 -26.61 -0.16 -2.76 16 16 C 0.17 3.91 5.30 -3.71 -0.02 3.90 16 17 N -0.59 -14.17 2.99 -172.32 -0.52 -14.68 16 18 C -0.26 -6.71 9.58 -15.06 -0.14 -6.85 16 19 H 0.06 1.61 7.89 -52.49 -0.41 1.20 16 20 C 0.00 0.09 4.92 -17.43 -0.09 0.01 16 21 N -0.90 -25.62 11.20 55.49 0.62 -25.00 16 22 Si 0.90 20.95 29.59 -169.99 -5.03 15.92 16 23 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 25 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 26 C 0.15 3.02 5.60 -3.71 -0.02 3.00 16 27 C -0.03 -0.28 9.31 -38.89 -0.36 -0.64 16 28 C -0.15 -1.40 5.89 -104.54 -0.62 -2.02 16 29 C -0.11 -0.72 9.61 36.01 0.35 -0.38 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.09 0.43 5.90 -51.93 -0.31 0.13 16 34 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.40 3.60 9.06 45.56 0.41 4.01 16 36 H 0.40 4.70 5.81 -40.82 -0.24 4.47 16 37 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 42 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 44 H 0.09 2.25 6.06 -51.93 -0.31 1.93 16 45 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 46 H 0.05 0.90 7.14 -51.93 -0.37 0.53 16 47 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.15 1.24 6.51 -52.49 -0.34 0.89 16 49 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 50 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 51 H 0.08 0.36 5.92 -51.93 -0.31 0.05 16 LS Contribution 404.28 15.07 6.09 6.09 Total: -1.00 -33.18 404.28 -9.89 -43.07 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -7.35 Total: 5.04 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: -2.57 Total: 1.78 kcal Atomic # 7 Polarization: -55.65 SS G_CDS: -0.31 Total: -55.96 kcal Atomic # 8 Polarization: -15.23 SS G_CDS: -0.71 Total: -15.94 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.03 Total: 15.92 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -33.18 -9.89 -43.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895410744.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.412 kcal (2) G-P(sol) polarization free energy of solvation -33.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds