Wall clock time and date at job start Wed Apr 1 2020 04:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50706 * 109.46964 * 2 1 4 4 N 1.31910 * 119.40371 * 90.00280 * 3 2 1 5 5 C 1.32207 * 121.79738 * 179.97438 * 4 3 2 6 6 O 1.35421 * 119.80208 * 180.02562 * 5 4 3 7 7 C 1.40324 * 120.39831 * 359.97438 * 5 4 3 8 8 C 1.47531 * 120.59474 * 180.02562 * 7 5 4 9 9 O 1.21583 * 120.00159 * 0.02562 * 8 7 5 10 10 N 1.34778 * 119.99576 * 179.97438 * 8 7 5 11 11 C 1.46500 * 119.99894 * 180.02562 * 10 8 7 12 12 C 1.52992 * 109.47361 * 180.02562 * 11 10 8 13 13 H 1.09003 * 109.49977 * 305.06519 * 12 11 10 14 14 C 1.53040 * 109.49986 * 184.99895 * 12 11 10 15 15 C 1.53036 * 109.53770 * 178.68160 * 14 12 11 16 16 C 1.53192 * 109.31423 * 61.37064 * 15 14 12 17 17 N 1.46933 * 108.77179 * 305.36248 * 16 15 14 18 18 C 1.36940 * 120.62635 * 233.58772 * 17 16 15 19 19 H 1.08000 * 119.99486 * 151.83814 * 18 17 16 20 20 C 1.38802 * 120.00441 * 331.83198 * 18 17 16 21 21 N 1.31627 * 119.99795 * 343.08346 * 20 18 17 22 22 Si 1.86802 * 120.00453 * 163.08345 * 20 18 17 23 23 H 1.48501 * 109.47149 * 89.99760 * 22 20 18 24 24 H 1.48496 * 109.47273 * 210.00169 * 22 20 18 25 25 H 1.48503 * 109.46808 * 330.00136 * 22 20 18 26 26 C 1.46922 * 118.73828 * 53.60988 * 17 16 15 27 27 C 1.39945 * 118.80691 * 0.02562 * 7 5 4 28 28 C 1.38309 * 119.40535 * 269.73056 * 3 2 1 29 29 C 1.50705 * 120.26904 * 359.97438 * 28 3 2 30 30 H 1.09002 * 109.46997 * 59.99879 * 1 2 3 31 31 H 1.08996 * 109.47196 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47073 * 300.00399 * 1 2 3 33 33 H 1.08997 * 109.47236 * 240.00035 * 2 1 3 34 34 H 1.09002 * 109.46660 * 119.99419 * 2 1 3 35 35 H 0.96699 * 114.00400 * 89.99827 * 6 5 4 36 36 H 0.96996 * 120.00097 * 0.02562 * 10 8 7 37 37 H 1.08998 * 109.46954 * 300.00808 * 11 10 8 38 38 H 1.09005 * 109.46788 * 59.99684 * 11 10 8 39 39 H 1.08997 * 109.45822 * 298.70438 * 14 12 11 40 40 H 1.09004 * 109.45781 * 58.67917 * 14 12 11 41 41 H 1.09006 * 109.49804 * 181.31732 * 15 14 12 42 42 H 1.09000 * 109.49901 * 301.37986 * 15 14 12 43 43 H 1.08997 * 109.58962 * 65.14637 * 16 15 14 44 44 H 1.08998 * 109.58567 * 185.58020 * 16 15 14 45 45 H 0.97005 * 119.99607 * 180.02562 * 21 20 18 46 46 H 1.09005 * 109.58392 * 186.60743 * 26 17 16 47 47 H 1.08994 * 109.59233 * 66.17736 * 26 17 16 48 48 H 1.07995 * 120.82971 * 180.02562 * 27 7 5 49 49 H 1.08995 * 109.46837 * 90.00381 * 29 28 3 50 50 H 1.09002 * 109.46815 * 210.00377 * 29 28 3 51 51 H 1.08999 * 109.47422 * 330.00110 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.2483 2.0315 1.1492 5 6 2.6890 3.2767 1.2044 6 8 2.8973 3.8642 2.4066 7 6 2.9433 3.9929 0.0248 8 6 3.4358 5.3824 0.0813 9 8 3.6253 5.9169 1.1568 10 7 3.6765 6.0589 -1.0592 11 6 4.1660 7.4385 -1.0031 12 6 4.3551 7.9708 -2.4250 13 1 5.0093 7.2992 -2.9809 14 6 4.9833 9.3653 -2.3691 15 6 5.2031 9.8850 -3.7916 16 6 3.8524 9.9916 -4.5064 17 7 3.1769 8.6885 -4.4377 18 6 2.7253 8.0759 -5.5761 19 1 2.6566 6.9990 -5.6188 20 6 2.3557 8.8390 -6.6751 21 7 2.1173 10.1257 -6.5327 22 14 2.1965 8.0401 -8.3561 23 1 0.8070 7.5501 -8.5417 24 1 2.5148 9.0367 -9.4100 25 1 3.1411 6.8984 -8.4529 26 6 2.9947 8.0557 -3.1243 27 6 2.7214 3.3653 -1.2062 28 6 2.2640 2.0592 -1.2049 29 6 2.0167 1.3396 -2.5057 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 3.7906 3.7401 2.7556 36 1 3.5257 5.6323 -1.9172 37 1 3.4419 8.0598 -0.4762 38 1 5.1193 7.4646 -0.4752 39 1 4.3175 10.0422 -1.8339 40 1 5.9405 9.3118 -1.8503 41 1 5.6719 10.8682 -3.7514 42 1 5.8495 9.1957 -4.3350 43 1 3.2385 10.7476 -4.0169 44 1 4.0115 10.2660 -5.5492 45 1 1.8587 10.6589 -7.3007 46 1 2.5880 7.0529 -3.2552 47 1 2.3110 8.6538 -2.5221 48 1 2.9067 3.8858 -2.1342 49 1 0.9882 1.5083 -2.8244 50 1 2.6996 1.7187 -3.2661 51 1 2.1837 0.2714 -2.3675 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000895410744.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:42 Heat of formation + Delta-G solvation = -60.449994 kcal Electronic energy + Delta-G solvation = -30828.357391 eV Core-core repulsion = 26726.889303 eV Total energy + Delta-G solvation = -4101.468088 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.08353 -40.48433 -39.31368 -38.49450 -36.26306 -35.18268 -34.61662 -34.30564 -32.32162 -32.21749 -31.16543 -27.74595 -27.31753 -27.04466 -25.84912 -23.90133 -23.63433 -23.04725 -22.40932 -21.48299 -20.62114 -19.76723 -18.77463 -18.31812 -18.23817 -16.97018 -16.79857 -16.61015 -16.38557 -15.89717 -15.74256 -15.42023 -15.31530 -15.06913 -14.94149 -14.74108 -14.51857 -14.21779 -14.00863 -13.89835 -13.71874 -13.61874 -13.50472 -13.17020 -13.00233 -12.91899 -12.86590 -12.64393 -12.48871 -12.27097 -12.25911 -11.97394 -11.82451 -11.77655 -11.58212 -11.40070 -11.19140 -11.08186 -10.93355 -10.52015 -10.45676 -10.15554 -9.67963 -8.66582 -7.85445 -5.31607 -0.53907 0.00163 1.48401 1.50422 1.59485 1.72454 2.03265 2.42510 2.52608 2.66085 3.29999 3.38438 3.54659 3.57074 3.64262 3.78260 3.98112 4.00706 4.03723 4.09998 4.23877 4.36327 4.41178 4.41325 4.55949 4.57191 4.61067 4.69855 4.74625 4.75809 4.87408 4.88350 4.90324 5.00898 5.02587 5.08259 5.10923 5.17111 5.21189 5.26668 5.31248 5.32657 5.36739 5.45267 5.56677 5.57928 5.67904 5.79031 6.38807 6.41699 6.52969 6.78911 7.10355 7.16046 7.87261 8.39903 9.21046 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010745 B = 0.002796 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2605.129267 B =10012.080279 C =12234.979513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.079 4.079 3 C 0.169 3.831 4 N -0.524 5.524 5 C 0.348 3.652 6 O -0.478 6.478 7 C -0.219 4.219 8 C 0.561 3.439 9 O -0.560 6.560 10 N -0.712 5.712 11 C 0.138 3.862 12 C -0.100 4.100 13 H 0.081 0.919 14 C -0.098 4.098 15 C -0.129 4.129 16 C 0.172 3.828 17 N -0.609 5.609 18 C -0.261 4.261 19 H 0.074 0.926 20 C -0.054 4.054 21 N -0.938 5.938 22 Si 0.967 3.033 23 H -0.286 1.286 24 H -0.297 1.297 25 H -0.265 1.265 26 C 0.152 3.848 27 C -0.027 4.027 28 C -0.146 4.146 29 C -0.113 4.113 30 H 0.061 0.939 31 H 0.085 0.915 32 H 0.038 0.962 33 H 0.117 0.883 34 H 0.083 0.917 35 H 0.415 0.585 36 H 0.409 0.591 37 H 0.056 0.944 38 H 0.077 0.923 39 H 0.053 0.947 40 H 0.081 0.919 41 H 0.068 0.932 42 H 0.055 0.945 43 H -0.010 1.010 44 H 0.052 0.948 45 H 0.248 0.752 46 H 0.057 0.943 47 H 0.002 0.998 48 H 0.163 0.837 49 H 0.085 0.915 50 H 0.082 0.918 51 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.159 -20.447 10.135 23.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.117 4.117 3 C 0.031 3.969 4 N -0.243 5.243 5 C 0.168 3.832 6 O -0.287 6.287 7 C -0.226 4.226 8 C 0.348 3.652 9 O -0.439 6.439 10 N -0.364 5.364 11 C 0.014 3.986 12 C -0.120 4.120 13 H 0.099 0.901 14 C -0.136 4.136 15 C -0.168 4.168 16 C 0.047 3.953 17 N -0.332 5.332 18 C -0.391 4.391 19 H 0.091 0.909 20 C -0.249 4.249 21 N -0.584 5.584 22 Si 0.795 3.205 23 H -0.212 1.212 24 H -0.224 1.224 25 H -0.189 1.189 26 C 0.026 3.974 27 C -0.053 4.053 28 C -0.148 4.148 29 C -0.170 4.170 30 H 0.080 0.920 31 H 0.104 0.896 32 H 0.057 0.943 33 H 0.135 0.865 34 H 0.102 0.898 35 H 0.277 0.723 36 H 0.246 0.754 37 H 0.074 0.926 38 H 0.095 0.905 39 H 0.072 0.928 40 H 0.100 0.900 41 H 0.087 0.913 42 H 0.074 0.926 43 H 0.008 0.992 44 H 0.070 0.930 45 H 0.057 0.943 46 H 0.076 0.924 47 H 0.020 0.980 48 H 0.181 0.819 49 H 0.104 0.896 50 H 0.100 0.900 51 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 3.555 -20.136 11.545 23.481 hybrid contribution 0.071 0.765 -1.691 1.857 sum 3.626 -19.371 9.854 22.034 Atomic orbital electron populations 1.21695 0.93295 1.03416 1.01731 1.20797 0.97054 0.88456 1.05389 1.21712 0.91282 0.97488 0.86427 1.67155 1.15753 1.09775 1.31604 1.19272 0.91899 0.86841 0.85164 1.84677 1.38255 1.73431 1.32350 1.21033 1.10101 0.96253 0.95194 1.18046 0.77504 0.85534 0.84074 1.90775 1.53399 1.70139 1.29635 1.45883 1.66905 1.14980 1.08605 1.21320 0.99525 0.80921 0.96793 1.21722 0.98454 0.97936 0.93879 0.90096 1.21341 1.00756 0.94958 0.96520 1.21993 0.97878 1.00636 0.96334 1.20635 0.90115 0.85845 0.98742 1.44308 1.65966 1.20933 1.01951 1.19554 1.36727 0.91252 0.91536 0.90856 1.25838 0.99699 0.96553 1.02777 1.70211 1.50887 1.07437 1.29886 0.85293 0.77919 0.77642 0.79693 1.21245 1.22394 1.18938 1.21022 0.94024 0.96285 0.86026 1.21947 0.92181 0.94209 0.96950 1.20993 1.01119 0.94591 0.98095 1.20958 1.03632 1.01137 0.91262 0.92011 0.89591 0.94310 0.86497 0.89796 0.72331 0.75383 0.92601 0.90489 0.92827 0.90030 0.91338 0.92608 0.99154 0.92997 0.94273 0.92423 0.97971 0.81923 0.89631 0.89951 0.88566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.90 71.98 0.71 -0.89 16 2 C -0.08 -0.91 5.81 29.85 0.17 -0.74 16 3 C 0.17 3.12 6.03 42.57 0.26 3.38 16 4 N -0.52 -12.87 10.28 -296.07 -3.04 -15.92 16 5 C 0.35 9.33 7.77 85.14 0.66 9.99 16 6 O -0.48 -13.12 11.66 -66.35 -0.77 -13.89 16 7 C -0.22 -5.48 5.90 -19.91 -0.12 -5.60 16 8 C 0.56 16.07 7.77 86.69 0.67 16.74 16 9 O -0.56 -19.60 15.19 16.83 0.26 -19.34 16 10 N -0.71 -17.93 5.29 -466.29 -2.46 -20.39 16 11 C 0.14 3.72 5.07 86.38 0.44 4.16 16 12 C -0.10 -2.96 2.37 -10.72 -0.03 -2.99 16 13 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 14 C -0.10 -2.91 5.17 30.62 0.16 -2.75 16 15 C -0.13 -4.57 6.08 30.67 0.19 -4.39 16 16 C 0.17 8.14 5.30 86.36 0.46 8.60 16 17 N -0.61 -29.21 2.99 -699.09 -2.09 -31.30 16 18 C -0.26 -13.63 9.58 84.03 0.81 -12.83 16 19 H 0.07 3.61 7.89 -2.91 -0.02 3.59 16 20 C -0.05 -2.91 4.92 84.86 0.42 -2.49 16 21 N -0.94 -54.93 11.20 21.65 0.24 -54.69 16 22 Si 0.97 43.17 29.59 68.60 2.03 45.20 16 23 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16 24 H -0.30 -13.55 7.11 99.48 0.71 -12.84 16 25 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 26 C 0.15 5.86 5.60 86.37 0.48 6.34 16 27 C -0.03 -0.52 9.31 22.72 0.21 -0.30 16 28 C -0.15 -2.35 5.89 -19.81 -0.12 -2.47 16 29 C -0.11 -1.03 9.61 71.24 0.68 -0.34 16 30 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.12 0.68 5.90 -2.39 -0.01 0.67 16 34 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.42 7.89 9.06 -74.06 -0.67 7.21 16 36 H 0.41 8.77 5.81 -92.71 -0.54 8.23 16 37 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 39 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.08 1.96 8.14 -2.38 -0.02 1.94 16 41 H 0.07 2.16 8.14 -2.38 -0.02 2.14 16 42 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 43 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 44 H 0.05 2.79 6.06 -2.39 -0.01 2.78 16 45 H 0.25 14.14 8.31 -92.70 -0.77 13.37 16 46 H 0.06 2.07 7.14 -2.38 -0.02 2.05 16 47 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 48 H 0.16 2.36 6.51 -2.91 -0.02 2.34 16 49 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 50 H 0.08 0.66 8.09 -2.39 -0.02 0.64 16 51 H 0.10 0.49 5.92 -2.39 -0.01 0.47 16 Total: -1.00 -73.96 404.28 -0.04 -74.00 By element: Atomic # 1 Polarization: 23.16 SS G_CDS: -0.25 Total: 22.91 kcal Atomic # 6 Polarization: 7.36 SS G_CDS: 6.06 Total: 13.42 kcal Atomic # 7 Polarization: -114.94 SS G_CDS: -7.36 Total: -122.30 kcal Atomic # 8 Polarization: -32.71 SS G_CDS: -0.52 Total: -33.23 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -73.96 -0.04 -74.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895410744.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.549 kcal (2) G-P(sol) polarization free energy of solvation -73.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds