Wall clock time and date at job start Wed Apr 1 2020 04:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50702 * 109.46965 * 2 1 4 4 C 1.38349 * 120.27358 * 90.00393 * 3 2 1 5 5 N 1.31887 * 121.18565 * 180.02562 * 4 3 2 6 6 C 1.32231 * 121.80329 * 359.97438 * 5 4 3 7 7 O 1.35424 * 119.79972 * 180.02562 * 6 5 4 8 8 C 1.40282 * 120.39893 * 0.02562 * 6 5 4 9 9 C 1.47519 * 120.59896 * 179.97438 * 8 6 5 10 10 O 1.21597 * 119.99640 * 0.02562 * 9 8 6 11 11 N 1.34777 * 120.00384 * 179.97438 * 9 8 6 12 12 C 1.46501 * 119.99979 * 180.02562 * 11 9 8 13 13 H 1.08999 * 109.44878 * 34.96283 * 12 11 9 14 14 C 1.53042 * 109.45603 * 274.99939 * 12 11 9 15 15 C 1.53191 * 109.30934 * 178.61725 * 14 12 11 16 16 N 1.46933 * 108.78000 * 54.63332 * 15 14 12 17 17 C 1.36934 * 120.63168 * 126.36332 * 16 15 14 18 18 H 1.08001 * 120.00050 * 332.51150 * 17 16 15 19 19 C 1.38809 * 119.99751 * 152.50359 * 17 16 15 20 20 N 1.31614 * 120.00350 * 335.03508 * 19 17 16 21 21 Si 1.86804 * 119.99809 * 155.03104 * 19 17 16 22 22 H 1.48500 * 109.46888 * 60.00458 * 21 19 17 23 23 H 1.48503 * 109.46987 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47223 * 300.00100 * 21 19 17 25 25 C 1.46928 * 118.73761 * 306.64597 * 16 15 14 26 26 C 1.52768 * 109.00701 * 53.30366 * 25 16 15 27 27 C 1.52996 * 109.56311 * 185.55450 * 26 25 16 28 28 C 1.52999 * 109.35774 * 65.50170 * 26 25 16 29 29 C 1.38340 * 120.26971 * 270.25977 * 3 2 1 30 30 H 1.08996 * 109.47704 * 59.99855 * 1 2 3 31 31 H 1.09001 * 109.46968 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.47100 * 300.00272 * 1 2 3 33 33 H 1.08994 * 109.47240 * 240.00242 * 2 1 3 34 34 H 1.09000 * 109.47337 * 119.99515 * 2 1 3 35 35 H 1.08006 * 119.40763 * 0.02562 * 4 3 2 36 36 H 0.96706 * 114.00369 * 269.98163 * 7 6 5 37 37 H 0.96996 * 119.99388 * 359.97438 * 11 9 8 38 38 H 1.08992 * 109.49955 * 58.66780 * 14 12 11 39 39 H 1.09002 * 109.52699 * 298.57824 * 14 12 11 40 40 H 1.09001 * 109.59242 * 294.84995 * 15 14 12 41 41 H 1.08999 * 109.70796 * 174.48794 * 15 14 12 42 42 H 0.97008 * 120.00026 * 354.25254 * 20 19 17 43 43 H 1.08992 * 109.58881 * 173.13939 * 25 16 15 44 44 H 1.08996 * 109.58116 * 293.56697 * 25 16 15 45 45 H 1.09002 * 109.47461 * 179.97438 * 27 26 25 46 46 H 1.09001 * 109.47181 * 299.96595 * 27 26 25 47 47 H 1.08999 * 109.47728 * 59.96496 * 27 26 25 48 48 H 1.08995 * 109.47216 * 300.15416 * 28 26 25 49 49 H 1.08996 * 109.47442 * 60.15530 * 28 26 25 50 50 H 1.09007 * 109.47167 * 180.15838 * 28 26 25 51 51 H 1.07999 * 120.82711 * 359.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2648 2.0784 1.1948 5 7 2.7039 3.3219 1.2158 6 6 2.9420 3.9957 0.1033 7 8 3.3928 5.2708 0.1722 8 6 2.7304 3.3976 -1.1479 9 6 2.9941 4.1455 -2.3919 10 8 3.3990 5.2908 -2.3384 11 7 2.7872 3.5590 -3.5876 12 6 3.0496 4.3015 -4.8229 13 1 3.9064 4.9591 -4.6760 14 6 1.8207 5.1385 -5.1853 15 6 2.1111 5.9399 -6.4582 16 7 2.5420 5.0124 -7.5131 17 6 1.9148 5.0001 -8.7303 18 1 0.8812 5.3037 -8.8083 19 6 2.6073 4.5975 -9.8639 20 7 3.9190 4.6984 -9.9043 21 14 1.6777 3.9122 -11.3322 22 1 0.7268 4.9350 -11.8371 23 1 2.6403 3.5577 -12.4059 24 1 0.9272 2.6988 -10.9205 25 6 3.6546 4.0939 -7.2351 26 6 3.3505 3.3171 -5.9553 27 6 4.5593 2.4585 -5.5778 28 6 2.1354 2.4164 -6.1854 29 6 2.2596 2.0801 -1.1948 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 2.0835 1.5642 2.1272 36 1 2.6908 5.9357 0.1920 37 1 2.4653 2.6450 -3.6301 38 1 1.5930 5.8232 -4.3684 39 1 0.9690 4.4801 -5.3564 40 1 2.9025 6.6632 -6.2621 41 1 1.2093 6.4625 -6.7773 42 1 4.3948 5.1302 -9.1775 43 1 3.7695 3.3972 -8.0653 44 1 4.5744 4.6637 -7.1035 45 1 4.3409 1.9052 -4.6643 46 1 4.7733 1.7575 -6.3846 47 1 5.4248 3.1007 -5.4155 48 1 1.2752 3.0288 -6.4557 49 1 2.3501 1.7155 -6.9921 50 1 1.9150 1.8631 -5.2724 51 1 2.0819 1.5893 -2.1402 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941129181.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:42 Heat of formation + Delta-G solvation = -30.467727 kcal Electronic energy + Delta-G solvation = -31972.657224 eV Core-core repulsion = 27872.489264 eV Total energy + Delta-G solvation = -4100.167960 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.18781 -39.81818 -38.17045 -37.47346 -34.83799 -34.62584 -33.33605 -32.55116 -31.86169 -29.54338 -29.11916 -26.92301 -26.19014 -25.54625 -24.46200 -24.38006 -22.66586 -21.74816 -20.78321 -20.30292 -19.15716 -18.44226 -17.56340 -17.51053 -16.98334 -16.29207 -15.61658 -15.05965 -15.00952 -14.62536 -14.44614 -14.38688 -14.23946 -13.90606 -13.72299 -13.66476 -13.43685 -13.33792 -13.02165 -12.72293 -12.59323 -12.46855 -12.11807 -11.95256 -11.76275 -11.59626 -11.53615 -11.47186 -10.98184 -10.97983 -10.70255 -10.46661 -10.38986 -10.22866 -10.18495 -10.09411 -10.07271 -9.83677 -9.57110 -9.27251 -9.12760 -8.76489 -8.38419 -6.90486 -6.08561 -3.24588 0.28965 0.71430 2.72999 3.09559 3.29809 3.47883 3.49777 3.56000 3.68476 4.13654 4.28295 4.37341 4.41601 4.57097 4.75150 4.87469 4.87904 5.00253 5.10709 5.11576 5.24938 5.31205 5.36096 5.38301 5.43234 5.49906 5.50390 5.72890 5.75229 5.78492 5.79504 5.92126 5.94517 6.05374 6.07444 6.16020 6.26939 6.31754 6.35149 6.49641 6.53470 6.69381 6.76657 6.79376 6.85208 7.04696 7.12193 7.27267 7.51115 7.58867 7.98458 8.24940 8.55575 9.09274 9.82589 10.27123 11.20054 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016659 B = 0.002782 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.328338 B =10062.147678 C =10942.076376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.079 4.079 3 C -0.153 4.153 4 C 0.147 3.853 5 N -0.505 5.505 6 C 0.363 3.637 7 O -0.459 6.459 8 C -0.195 4.195 9 C 0.557 3.443 10 O -0.519 6.519 11 N -0.715 5.715 12 C 0.165 3.835 13 H 0.083 0.917 14 C -0.142 4.142 15 C 0.149 3.851 16 N -0.596 5.596 17 C -0.347 4.347 18 H 0.056 0.944 19 C -0.023 4.023 20 N -0.915 5.915 21 Si 1.062 2.938 22 H -0.293 1.293 23 H -0.286 1.286 24 H -0.294 1.294 25 C 0.166 3.834 26 C -0.092 4.092 27 C -0.136 4.136 28 C -0.128 4.128 29 C -0.029 4.029 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.163 0.837 36 H 0.405 0.595 37 H 0.393 0.607 38 H 0.055 0.945 39 H 0.064 0.936 40 H 0.018 0.982 41 H 0.057 0.943 42 H 0.269 0.731 43 H 0.085 0.915 44 H 0.018 0.982 45 H 0.044 0.956 46 H 0.057 0.943 47 H 0.052 0.948 48 H 0.072 0.928 49 H 0.054 0.946 50 H 0.029 0.971 51 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.919 -10.573 20.620 23.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.117 4.117 3 C -0.156 4.156 4 C -0.011 4.011 5 N -0.223 5.223 6 C 0.183 3.817 7 O -0.267 6.267 8 C -0.202 4.202 9 C 0.342 3.658 10 O -0.395 6.395 11 N -0.366 5.366 12 C 0.061 3.939 13 H 0.101 0.899 14 C -0.182 4.182 15 C 0.023 3.977 16 N -0.319 5.319 17 C -0.476 4.476 18 H 0.073 0.927 19 C -0.225 4.225 20 N -0.555 5.555 21 Si 0.892 3.108 22 H -0.220 1.220 23 H -0.211 1.211 24 H -0.221 1.221 25 C 0.039 3.961 26 C -0.094 4.094 27 C -0.194 4.194 28 C -0.185 4.185 29 C -0.055 4.055 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.180 0.820 36 H 0.265 0.735 37 H 0.229 0.771 38 H 0.073 0.927 39 H 0.082 0.918 40 H 0.036 0.964 41 H 0.076 0.924 42 H 0.080 0.920 43 H 0.103 0.897 44 H 0.035 0.965 45 H 0.063 0.937 46 H 0.076 0.924 47 H 0.071 0.929 48 H 0.091 0.909 49 H 0.073 0.927 50 H 0.048 0.952 51 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -4.741 -10.146 19.841 22.784 hybrid contribution -0.917 0.127 0.828 1.242 sum -5.659 -10.019 20.669 23.656 Atomic orbital electron populations 1.21789 0.94289 1.02217 1.02434 1.20478 0.96426 0.91075 1.03683 1.20859 1.02621 0.98458 0.93618 1.22632 0.91813 0.88829 0.97832 1.67339 1.13715 1.09804 1.31467 1.19189 0.89011 0.87201 0.86282 1.84723 1.35055 1.11588 1.95286 1.21274 1.07064 0.96659 0.95172 1.17809 0.78537 0.86491 0.82948 1.90824 1.44709 1.17052 1.86963 1.46225 1.67365 1.17326 1.05713 1.21009 0.98513 0.92977 0.81358 0.89916 1.22434 0.97575 0.99143 0.99057 1.20864 0.97936 0.91337 0.87599 1.44104 1.38945 1.37457 1.11387 1.19938 0.94725 1.47874 0.85102 0.92656 1.25793 0.96834 1.00577 0.99295 1.70782 1.07812 1.42847 1.34079 0.83570 0.74816 0.76409 0.76052 1.22030 1.21136 1.22096 1.20900 0.89655 0.92148 0.93370 1.21366 0.95541 0.95623 0.96894 1.21793 0.97710 0.99515 1.00397 1.21758 0.98717 0.98813 0.99198 1.21641 0.92710 0.92245 0.98920 0.92367 0.91923 0.92432 0.90392 0.90312 0.81973 0.73527 0.77116 0.92650 0.91759 0.96379 0.92408 0.91984 0.89657 0.96452 0.93678 0.92372 0.92926 0.90889 0.92674 0.95171 0.84172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 9.89 37.16 0.37 -0.35 16 2 C -0.08 -0.39 6.08 -27.88 -0.17 -0.56 16 3 C -0.15 -1.16 5.14 -104.54 -0.54 -1.70 16 4 C 0.15 1.24 10.84 -17.49 -0.19 1.05 16 5 N -0.51 -5.89 10.37 -12.98 -0.13 -6.02 16 6 C 0.36 4.66 7.77 -16.61 -0.13 4.53 16 7 O -0.46 -6.13 11.66 -39.73 -0.46 -6.60 16 8 C -0.19 -2.38 5.90 -104.69 -0.62 -3.00 16 9 C 0.56 8.23 7.74 -12.48 -0.10 8.13 16 10 O -0.52 -9.45 14.85 -16.49 -0.24 -9.69 16 11 N -0.71 -9.76 4.24 -54.81 -0.23 -9.99 16 12 C 0.16 2.75 1.57 -67.89 -0.11 2.65 16 13 H 0.08 1.59 7.57 -51.93 -0.39 1.20 16 14 C -0.14 -2.50 5.31 -26.61 -0.14 -2.64 16 15 C 0.15 3.13 6.52 -3.71 -0.02 3.10 16 16 N -0.60 -14.20 2.30 -172.58 -0.40 -14.60 16 17 C -0.35 -9.29 9.49 -15.06 -0.14 -9.44 16 18 H 0.06 1.50 7.94 -52.49 -0.42 1.08 16 19 C -0.02 -0.63 4.68 -17.43 -0.08 -0.71 16 20 N -0.92 -26.71 12.41 55.49 0.69 -26.02 16 21 Si 1.06 24.55 29.99 -169.99 -5.10 19.46 16 22 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 24 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 25 C 0.17 3.67 3.33 -3.93 -0.01 3.65 16 26 C -0.09 -1.57 0.56 -154.61 -0.09 -1.66 16 27 C -0.14 -2.04 8.31 37.16 0.31 -1.73 16 28 C -0.13 -2.05 7.82 37.16 0.29 -1.76 16 29 C -0.03 -0.26 9.31 -38.89 -0.36 -0.63 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.06 0.27 8.14 -51.92 -0.42 -0.15 16 33 H 0.08 0.35 8.09 -51.93 -0.42 -0.07 16 34 H 0.08 0.29 8.09 -51.93 -0.42 -0.13 16 35 H 0.16 0.86 8.06 -52.48 -0.42 0.44 16 36 H 0.40 3.76 9.06 45.56 0.41 4.17 16 37 H 0.39 4.41 4.76 -40.82 -0.19 4.22 16 38 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.06 1.12 6.34 -51.93 -0.33 0.79 16 40 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.06 1.21 7.93 -51.93 -0.41 0.80 16 42 H 0.27 7.96 6.71 -40.82 -0.27 7.68 16 43 H 0.09 2.12 6.30 -51.93 -0.33 1.80 16 44 H 0.02 0.41 7.87 -51.93 -0.41 0.00 16 45 H 0.04 0.57 7.36 -51.93 -0.38 0.19 16 46 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 48 H 0.07 1.34 5.97 -51.93 -0.31 1.03 16 49 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 50 H 0.03 0.38 6.58 -51.93 -0.34 0.03 16 51 H 0.14 0.99 6.52 -52.49 -0.34 0.65 16 LS Contribution 397.70 15.07 5.99 5.99 Total: -1.00 -33.08 397.70 -8.78 -41.86 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -7.16 Total: 6.65 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: -1.73 Total: -1.04 kcal Atomic # 7 Polarization: -56.56 SS G_CDS: -0.08 Total: -56.63 kcal Atomic # 8 Polarization: -15.58 SS G_CDS: -0.71 Total: -16.29 kcal Atomic # 14 Polarization: 24.55 SS G_CDS: -5.10 Total: 19.46 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.08 -8.78 -41.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941129181.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.391 kcal (2) G-P(sol) polarization free energy of solvation -33.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds