Wall clock time and date at job start Wed Apr 1 2020 04:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50702 * 109.46965 * 2 1 4 4 C 1.38349 * 120.27358 * 90.00393 * 3 2 1 5 5 N 1.31887 * 121.18565 * 180.02562 * 4 3 2 6 6 C 1.32231 * 121.80329 * 359.97438 * 5 4 3 7 7 O 1.35424 * 119.79972 * 180.02562 * 6 5 4 8 8 C 1.40282 * 120.39893 * 0.02562 * 6 5 4 9 9 C 1.47519 * 120.59896 * 179.97438 * 8 6 5 10 10 O 1.21597 * 119.99640 * 0.02562 * 9 8 6 11 11 N 1.34777 * 120.00384 * 179.97438 * 9 8 6 12 12 C 1.46501 * 119.99979 * 180.02562 * 11 9 8 13 13 H 1.08999 * 109.44878 * 34.96283 * 12 11 9 14 14 C 1.53042 * 109.45603 * 274.99939 * 12 11 9 15 15 C 1.53191 * 109.30934 * 178.61725 * 14 12 11 16 16 N 1.46933 * 108.78000 * 54.63332 * 15 14 12 17 17 C 1.36934 * 120.63168 * 126.36332 * 16 15 14 18 18 H 1.08001 * 120.00050 * 332.51150 * 17 16 15 19 19 C 1.38809 * 119.99751 * 152.50359 * 17 16 15 20 20 N 1.31614 * 120.00350 * 335.03508 * 19 17 16 21 21 Si 1.86804 * 119.99809 * 155.03104 * 19 17 16 22 22 H 1.48500 * 109.46888 * 60.00458 * 21 19 17 23 23 H 1.48503 * 109.46987 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47223 * 300.00100 * 21 19 17 25 25 C 1.46928 * 118.73761 * 306.64597 * 16 15 14 26 26 C 1.52768 * 109.00701 * 53.30366 * 25 16 15 27 27 C 1.52996 * 109.56311 * 185.55450 * 26 25 16 28 28 C 1.52999 * 109.35774 * 65.50170 * 26 25 16 29 29 C 1.38340 * 120.26971 * 270.25977 * 3 2 1 30 30 H 1.08996 * 109.47704 * 59.99855 * 1 2 3 31 31 H 1.09001 * 109.46968 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.47100 * 300.00272 * 1 2 3 33 33 H 1.08994 * 109.47240 * 240.00242 * 2 1 3 34 34 H 1.09000 * 109.47337 * 119.99515 * 2 1 3 35 35 H 1.08006 * 119.40763 * 0.02562 * 4 3 2 36 36 H 0.96706 * 114.00369 * 269.98163 * 7 6 5 37 37 H 0.96996 * 119.99388 * 359.97438 * 11 9 8 38 38 H 1.08992 * 109.49955 * 58.66780 * 14 12 11 39 39 H 1.09002 * 109.52699 * 298.57824 * 14 12 11 40 40 H 1.09001 * 109.59242 * 294.84995 * 15 14 12 41 41 H 1.08999 * 109.70796 * 174.48794 * 15 14 12 42 42 H 0.97008 * 120.00026 * 354.25254 * 20 19 17 43 43 H 1.08992 * 109.58881 * 173.13939 * 25 16 15 44 44 H 1.08996 * 109.58116 * 293.56697 * 25 16 15 45 45 H 1.09002 * 109.47461 * 179.97438 * 27 26 25 46 46 H 1.09001 * 109.47181 * 299.96595 * 27 26 25 47 47 H 1.08999 * 109.47728 * 59.96496 * 27 26 25 48 48 H 1.08995 * 109.47216 * 300.15416 * 28 26 25 49 49 H 1.08996 * 109.47442 * 60.15530 * 28 26 25 50 50 H 1.09007 * 109.47167 * 180.15838 * 28 26 25 51 51 H 1.07999 * 120.82711 * 359.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2648 2.0784 1.1948 5 7 2.7039 3.3219 1.2158 6 6 2.9420 3.9957 0.1033 7 8 3.3928 5.2708 0.1722 8 6 2.7304 3.3976 -1.1479 9 6 2.9941 4.1455 -2.3919 10 8 3.3990 5.2908 -2.3384 11 7 2.7872 3.5590 -3.5876 12 6 3.0496 4.3015 -4.8229 13 1 3.9064 4.9591 -4.6760 14 6 1.8207 5.1385 -5.1853 15 6 2.1111 5.9399 -6.4582 16 7 2.5420 5.0124 -7.5131 17 6 1.9148 5.0001 -8.7303 18 1 0.8812 5.3037 -8.8083 19 6 2.6073 4.5975 -9.8639 20 7 3.9190 4.6984 -9.9043 21 14 1.6777 3.9122 -11.3322 22 1 0.7268 4.9350 -11.8371 23 1 2.6403 3.5577 -12.4059 24 1 0.9272 2.6988 -10.9205 25 6 3.6546 4.0939 -7.2351 26 6 3.3505 3.3171 -5.9553 27 6 4.5593 2.4585 -5.5778 28 6 2.1354 2.4164 -6.1854 29 6 2.2596 2.0801 -1.1948 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 2.0835 1.5642 2.1272 36 1 2.6908 5.9357 0.1920 37 1 2.4653 2.6450 -3.6301 38 1 1.5930 5.8232 -4.3684 39 1 0.9690 4.4801 -5.3564 40 1 2.9025 6.6632 -6.2621 41 1 1.2093 6.4625 -6.7773 42 1 4.3948 5.1302 -9.1775 43 1 3.7695 3.3972 -8.0653 44 1 4.5744 4.6637 -7.1035 45 1 4.3409 1.9052 -4.6643 46 1 4.7733 1.7575 -6.3846 47 1 5.4248 3.1007 -5.4155 48 1 1.2752 3.0288 -6.4557 49 1 2.3501 1.7155 -6.9921 50 1 1.9150 1.8631 -5.2724 51 1 2.0819 1.5893 -2.1402 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941129181.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:41 Heat of formation + Delta-G solvation = -53.075581 kcal Electronic energy + Delta-G solvation = -31973.637574 eV Core-core repulsion = 27872.489264 eV Total energy + Delta-G solvation = -4101.148310 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.10496 -41.06949 -39.47972 -38.37187 -36.50436 -35.21828 -34.59902 -34.04051 -33.16055 -30.91439 -30.04636 -28.25263 -27.79927 -26.97560 -25.63764 -24.99209 -24.05684 -22.70961 -22.45485 -21.43280 -20.11887 -19.68399 -19.42431 -18.40611 -18.18796 -17.15737 -16.86954 -16.34306 -16.14993 -16.06586 -15.54753 -15.44521 -15.41280 -15.24475 -15.00631 -14.87401 -14.62035 -14.26773 -14.21323 -13.99949 -13.72754 -13.62651 -13.11151 -13.01606 -12.94192 -12.82265 -12.69311 -12.53959 -12.44976 -12.32831 -12.14915 -11.91242 -11.82261 -11.80905 -11.70621 -11.41699 -11.26618 -11.09843 -11.01815 -10.48122 -10.44392 -10.11783 -9.79666 -8.92861 -8.22963 -5.37759 -0.51611 0.00026 1.60458 1.66891 1.75887 1.85919 1.96683 2.46376 2.67071 2.72701 3.22539 3.39640 3.51338 3.56553 3.66090 3.68252 3.81437 3.85672 3.97330 4.12891 4.22445 4.26892 4.30647 4.45133 4.51415 4.53325 4.54468 4.67334 4.70619 4.74543 4.80118 4.83515 4.87635 4.92584 4.93932 4.99964 5.09584 5.12444 5.19111 5.19459 5.27236 5.33753 5.35323 5.37997 5.43459 5.50782 5.61037 5.86251 6.39937 6.41567 6.52175 6.77844 7.05220 7.13321 7.78853 8.23305 9.02245 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016659 B = 0.002782 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.328338 B =10062.147678 C =10942.076376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.076 4.076 3 C -0.140 4.140 4 C 0.149 3.851 5 N -0.527 5.527 6 C 0.343 3.657 7 O -0.482 6.482 8 C -0.212 4.212 9 C 0.559 3.441 10 O -0.561 6.561 11 N -0.700 5.700 12 C 0.178 3.822 13 H 0.054 0.946 14 C -0.126 4.126 15 C 0.146 3.854 16 N -0.609 5.609 17 C -0.348 4.348 18 H 0.052 0.948 19 C -0.073 4.073 20 N -0.943 5.943 21 Si 1.112 2.888 22 H -0.280 1.280 23 H -0.295 1.295 24 H -0.275 1.275 25 C 0.175 3.825 26 C -0.082 4.082 27 C -0.132 4.132 28 C -0.122 4.122 29 C -0.024 4.024 30 H 0.050 0.950 31 H 0.073 0.927 32 H 0.056 0.944 33 H 0.089 0.911 34 H 0.097 0.903 35 H 0.196 0.804 36 H 0.415 0.585 37 H 0.409 0.591 38 H 0.059 0.941 39 H 0.075 0.925 40 H 0.003 0.997 41 H 0.055 0.945 42 H 0.252 0.748 43 H 0.055 0.945 44 H -0.010 1.010 45 H 0.078 0.922 46 H 0.059 0.941 47 H 0.040 0.960 48 H 0.051 0.949 49 H 0.047 0.953 50 H 0.075 0.925 51 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.838 -14.052 22.469 27.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.113 4.113 3 C -0.142 4.142 4 C -0.009 4.009 5 N -0.245 5.245 6 C 0.164 3.836 7 O -0.291 6.291 8 C -0.218 4.218 9 C 0.346 3.654 10 O -0.440 6.440 11 N -0.352 5.352 12 C 0.073 3.927 13 H 0.072 0.928 14 C -0.166 4.166 15 C 0.020 3.980 16 N -0.333 5.333 17 C -0.478 4.478 18 H 0.069 0.931 19 C -0.270 4.270 20 N -0.585 5.585 21 Si 0.937 3.063 22 H -0.206 1.206 23 H -0.221 1.221 24 H -0.200 1.200 25 C 0.049 3.951 26 C -0.084 4.084 27 C -0.189 4.189 28 C -0.179 4.179 29 C -0.050 4.050 30 H 0.069 0.931 31 H 0.092 0.908 32 H 0.075 0.925 33 H 0.107 0.893 34 H 0.116 0.884 35 H 0.213 0.787 36 H 0.276 0.724 37 H 0.248 0.752 38 H 0.078 0.922 39 H 0.093 0.907 40 H 0.021 0.979 41 H 0.073 0.927 42 H 0.062 0.938 43 H 0.074 0.926 44 H 0.008 0.992 45 H 0.096 0.904 46 H 0.078 0.922 47 H 0.059 0.941 48 H 0.070 0.930 49 H 0.066 0.934 50 H 0.094 0.906 51 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -6.693 -13.649 21.732 26.521 hybrid contribution -0.342 1.230 0.367 1.328 sum -7.035 -12.419 22.099 26.308 Atomic orbital electron populations 1.21796 0.94070 1.02854 1.02058 1.20573 0.96390 0.89098 1.05268 1.21176 1.00841 0.99572 0.92606 1.23302 0.90006 0.87819 0.99752 1.67373 1.14753 1.11316 1.31107 1.19363 0.90124 0.87117 0.87039 1.84671 1.36388 1.12619 1.95437 1.21016 1.09523 0.97971 0.93319 1.18198 0.77387 0.86083 0.83736 1.90807 1.46574 1.19076 1.87553 1.45884 1.67269 1.17723 1.04346 1.20585 0.96947 0.92639 0.82547 0.92814 1.22224 0.98298 0.99035 0.97058 1.20939 0.97134 0.91330 0.88586 1.44294 1.39068 1.38640 1.11290 1.20168 0.94554 1.46788 0.86281 0.93061 1.27118 0.96842 1.00988 1.02003 1.70909 1.08863 1.44827 1.33886 0.82895 0.73832 0.76720 0.72872 1.20570 1.22122 1.20044 1.20726 0.88156 0.91330 0.94937 1.21168 0.97455 0.95571 0.94245 1.21759 0.96090 0.99131 1.01959 1.21692 0.96755 0.98243 1.01199 1.21932 0.91462 0.90854 1.00721 0.93129 0.90825 0.92508 0.89251 0.88425 0.78713 0.72403 0.75206 0.92200 0.90650 0.97901 0.92672 0.93821 0.92635 0.99206 0.90361 0.92160 0.94067 0.93022 0.93379 0.90629 0.81728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 9.89 71.98 0.71 -0.10 16 2 C -0.08 -0.38 6.08 29.85 0.18 -0.20 16 3 C -0.14 -1.57 5.14 -19.81 -0.10 -1.67 16 4 C 0.15 2.03 10.84 84.71 0.92 2.95 16 5 N -0.53 -11.47 10.37 -308.00 -3.19 -14.66 16 6 C 0.34 8.60 7.77 85.13 0.66 9.26 16 7 O -0.48 -13.26 11.66 -66.37 -0.77 -14.03 16 8 C -0.21 -4.82 5.90 -19.91 -0.12 -4.94 16 9 C 0.56 16.01 7.74 86.69 0.67 16.68 16 10 O -0.56 -20.80 14.85 16.79 0.25 -20.56 16 11 N -0.70 -17.71 4.24 -445.58 -1.89 -19.61 16 12 C 0.18 5.87 1.57 45.02 0.07 5.94 16 13 H 0.05 2.13 7.57 -2.39 -0.02 2.11 16 14 C -0.13 -4.42 5.31 30.67 0.16 -4.25 16 15 C 0.15 6.32 6.52 86.36 0.56 6.88 16 16 N -0.61 -29.98 2.30 -699.91 -1.61 -31.59 16 17 C -0.35 -19.01 9.49 84.03 0.80 -18.21 16 18 H 0.05 2.80 7.94 -2.91 -0.02 2.78 16 19 C -0.07 -4.09 4.68 84.86 0.40 -3.69 16 20 N -0.94 -57.02 12.41 21.65 0.27 -56.75 16 21 Si 1.11 49.81 29.99 68.60 2.06 51.87 16 22 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 23 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 24 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 25 C 0.17 8.03 3.33 86.22 0.29 8.32 16 26 C -0.08 -2.77 0.56 -52.25 -0.03 -2.80 16 27 C -0.13 -3.76 8.31 71.98 0.60 -3.16 16 28 C -0.12 -3.64 7.82 71.98 0.56 -3.07 16 29 C -0.02 -0.35 9.31 22.72 0.21 -0.14 16 30 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.07 0.27 8.14 -2.39 -0.02 0.25 16 32 H 0.06 0.32 8.14 -2.38 -0.02 0.30 16 33 H 0.09 0.32 8.09 -2.39 -0.02 0.30 16 34 H 0.10 0.19 8.09 -2.39 -0.02 0.17 16 35 H 0.20 1.24 8.06 -2.91 -0.02 1.21 16 36 H 0.41 8.27 9.06 -74.05 -0.67 7.59 16 37 H 0.41 7.58 4.76 -92.71 -0.44 7.14 16 38 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.07 2.50 6.34 -2.39 -0.02 2.49 16 40 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 41 H 0.05 2.36 7.93 -2.39 -0.02 2.35 16 42 H 0.25 15.72 6.71 -92.70 -0.62 15.10 16 43 H 0.06 2.88 6.30 -2.39 -0.02 2.86 16 44 H -0.01 -0.50 7.87 -2.39 -0.02 -0.52 16 45 H 0.08 1.72 7.36 -2.39 -0.02 1.70 16 46 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 47 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 48 H 0.05 1.79 5.97 -2.39 -0.01 1.77 16 49 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 50 H 0.07 1.55 6.58 -2.38 -0.02 1.54 16 51 H 0.17 1.49 6.52 -2.91 -0.02 1.47 16 Total: -1.00 -76.26 397.70 1.65 -74.61 By element: Atomic # 1 Polarization: 22.91 SS G_CDS: -0.01 Total: 22.90 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: 6.55 Total: 7.82 kcal Atomic # 7 Polarization: -116.18 SS G_CDS: -6.42 Total: -122.61 kcal Atomic # 8 Polarization: -34.06 SS G_CDS: -0.52 Total: -34.59 kcal Atomic # 14 Polarization: 49.81 SS G_CDS: 2.06 Total: 51.87 kcal Total: -76.26 1.65 -74.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941129181.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.534 kcal (2) G-P(sol) polarization free energy of solvation -76.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds