Wall clock time and date at job start Wed Apr 1 2020 05:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50706 * 109.47120 * 2 1 4 4 C 1.35129 * 125.61475 * 89.99963 * 3 2 1 5 5 C 1.40372 * 107.11577 * 180.02562 * 4 3 2 6 6 C 1.50696 * 126.64297 * 179.97438 * 5 4 3 7 7 C 1.36541 * 106.70209 * 0.02562 * 5 4 3 8 8 C 1.46659 * 125.98229 * 179.97438 * 7 5 4 9 9 O 1.21700 * 119.99886 * 7.25190 * 8 7 5 10 10 N 1.34774 * 120.00233 * 187.24167 * 8 7 5 11 11 C 1.47075 * 120.88485 * 176.19763 * 10 8 7 12 12 C 1.53235 * 108.52620 * 231.20990 * 11 10 8 13 13 N 1.46898 * 109.34241 * 306.17364 * 12 11 10 14 14 C 1.46894 * 111.00171 * 187.25002 * 13 12 11 15 15 C 1.53947 * 113.74330 * 273.74259 * 14 13 12 16 16 N 1.47812 * 86.03618 * 222.08314 * 15 14 13 17 17 C 1.36941 * 134.45465 * 204.64025 * 16 15 14 18 18 H 1.08004 * 119.99436 * 184.60899 * 17 16 15 19 19 C 1.38802 * 120.00280 * 4.61038 * 17 16 15 20 20 N 1.31623 * 120.00121 * 354.65273 * 19 17 16 21 21 Si 1.86803 * 120.00245 * 174.64815 * 19 17 16 22 22 H 1.48498 * 109.47142 * 94.99784 * 21 19 17 23 23 H 1.48498 * 109.47098 * 214.99742 * 21 19 17 24 24 H 1.48503 * 109.46903 * 334.99867 * 21 19 17 25 25 C 1.47581 * 91.05165 * 24.54711 * 16 15 14 26 26 C 1.46902 * 111.26767 * 63.09867 * 13 12 11 27 27 C 1.47087 * 120.87757 * 356.22977 * 10 8 7 28 28 O 1.33925 * 125.61665 * 270.29665 * 3 2 1 29 29 H 1.08998 * 109.47041 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46843 * 300.00126 * 1 2 3 31 31 H 1.09002 * 109.47261 * 59.99865 * 1 2 3 32 32 H 1.08999 * 109.47333 * 240.00467 * 2 1 3 33 33 H 1.08993 * 109.47012 * 120.00033 * 2 1 3 34 34 H 1.08008 * 126.44574 * 0.02562 * 4 3 2 35 35 H 1.08999 * 109.46846 * 270.03414 * 6 5 4 36 36 H 1.08993 * 109.47468 * 30.04433 * 6 5 4 37 37 H 1.09005 * 109.46696 * 150.04501 * 6 5 4 38 38 H 1.09006 * 109.62774 * 111.50317 * 11 10 8 39 39 H 1.09003 * 109.62755 * 350.92538 * 11 10 8 40 40 H 1.09002 * 109.49675 * 186.20962 * 12 11 10 41 41 H 1.09000 * 109.49198 * 66.13120 * 12 11 10 42 42 H 1.09006 * 112.94734 * 45.33181 * 14 13 12 43 43 H 1.09004 * 113.76769 * 336.34606 * 15 14 13 44 44 H 1.08994 * 113.77319 * 107.74433 * 15 14 13 45 45 H 0.97002 * 120.00059 * 180.02562 * 20 19 17 46 46 H 1.09002 * 113.76913 * 221.15057 * 25 16 15 47 47 H 1.08998 * 113.87286 * 89.76717 * 25 16 15 48 48 H 1.09002 * 109.49383 * 56.85896 * 26 13 12 49 49 H 1.09003 * 109.49388 * 176.93593 * 26 13 12 50 50 H 1.08993 * 109.63002 * 9.07756 * 27 10 8 51 51 H 1.08999 * 109.62220 * 248.49714 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2947 2.1628 1.0985 5 6 2.7378 3.4180 0.6531 6 6 3.1493 4.5841 1.5144 7 6 2.7227 3.3780 -0.7116 8 6 3.1078 4.4713 -1.6101 9 8 3.6066 5.4845 -1.1565 10 7 2.9094 4.3539 -2.9379 11 6 3.2110 5.4694 -3.8478 12 6 1.9859 5.7202 -4.7335 13 7 1.5986 4.4668 -5.3944 14 6 0.5370 4.6991 -6.3828 15 6 -0.8824 4.6641 -5.7876 16 7 -1.2579 3.8950 -6.9928 17 6 -2.4281 3.6910 -7.6742 18 1 -2.4541 3.0072 -8.5098 19 6 -3.5806 4.3629 -7.2911 20 7 -3.5759 5.1145 -6.2105 21 14 -5.1385 4.2008 -8.3091 22 1 -5.9958 3.1327 -7.7354 23 1 -5.8763 5.4895 -8.2936 24 1 -4.7817 3.8514 -9.7077 25 6 0.1342 3.4376 -7.1679 26 6 1.1922 3.4509 -4.4142 27 6 2.3848 3.1071 -3.5155 28 8 2.2870 2.1581 -1.0887 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8934 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 2.1841 1.8490 2.1261 35 1 2.2793 5.2070 1.7224 36 1 3.5643 4.2147 2.4521 37 1 3.9019 5.1743 0.9915 38 1 4.0671 5.2119 -4.4715 39 1 3.4332 6.3652 -3.2678 40 1 2.2292 6.4689 -5.4874 41 1 1.1598 6.0776 -4.1187 42 1 0.7267 5.5671 -7.0143 43 1 -0.9566 4.0938 -4.8617 44 1 -1.3566 5.6435 -5.7246 45 1 -4.3815 5.5837 -5.9426 46 1 0.4701 3.4396 -8.2049 47 1 0.3611 2.5062 -6.6491 48 1 0.3771 3.8399 -3.8039 49 1 0.8599 2.5538 -4.9366 50 1 2.0607 2.4411 -2.7159 51 1 3.1615 2.6226 -4.1072 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941639445.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:41 Heat of formation + Delta-G solvation = 60.878143 kcal Electronic energy + Delta-G solvation = -31697.424551 eV Core-core repulsion = 27601.217645 eV Total energy + Delta-G solvation = -4096.206906 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.98827 -40.10165 -38.81562 -36.71702 -34.67721 -34.19792 -33.62866 -31.93895 -31.19829 -29.55767 -28.47068 -27.50766 -26.14812 -24.86806 -24.50309 -23.78235 -22.72121 -21.79573 -21.48969 -20.18615 -19.52765 -18.58878 -17.33734 -16.89171 -16.76838 -16.34365 -15.77056 -15.33663 -15.10215 -14.96669 -14.75627 -14.68448 -14.33241 -14.16700 -13.79176 -13.53564 -13.43311 -13.30169 -13.02529 -12.85790 -12.70405 -12.34195 -12.26464 -12.23682 -11.90427 -11.74852 -11.68177 -11.55581 -11.33221 -11.19072 -10.96743 -10.81904 -10.65554 -10.56363 -10.19306 -10.07287 -9.91152 -9.80048 -9.54825 -8.90597 -8.74486 -8.49928 -7.83287 -6.87290 -5.78745 -3.11186 0.91175 2.13843 2.37445 2.92717 3.08820 3.36984 3.42310 3.44663 4.12575 4.21575 4.44740 4.48538 4.61089 4.75422 4.89310 4.96985 5.02541 5.07634 5.17921 5.27593 5.29137 5.34544 5.38916 5.41023 5.42736 5.47722 5.51497 5.57115 5.58295 5.66798 5.68092 5.82058 5.85194 5.90343 5.96003 5.97770 6.06191 6.12849 6.18421 6.29842 6.32491 6.44886 6.54707 6.62031 6.75231 6.99572 7.20473 7.27960 7.37576 7.51984 7.60994 7.96197 7.96638 9.01970 9.69023 10.57985 11.37858 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011648 B = 0.002891 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2403.199980 B = 9683.999086 C =10984.901639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.048 4.048 3 C 0.019 3.981 4 C -0.221 4.221 5 C -0.083 4.083 6 C -0.096 4.096 7 C -0.085 4.085 8 C 0.603 3.397 9 O -0.527 6.527 10 N -0.601 5.601 11 C 0.119 3.881 12 C 0.042 3.958 13 N -0.529 5.529 14 C 0.035 3.965 15 C 0.130 3.870 16 N -0.609 5.609 17 C -0.222 4.222 18 H 0.080 0.920 19 C -0.007 4.007 20 N -0.921 5.921 21 Si 0.911 3.089 22 H -0.290 1.290 23 H -0.290 1.290 24 H -0.280 1.280 25 C 0.127 3.873 26 C 0.039 3.961 27 C 0.097 3.903 28 O -0.152 6.152 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.085 0.915 33 H 0.095 0.905 34 H 0.153 0.847 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.088 0.912 38 H 0.077 0.923 39 H 0.094 0.906 40 H 0.088 0.912 41 H 0.041 0.959 42 H 0.100 0.900 43 H 0.029 0.971 44 H 0.070 0.930 45 H 0.253 0.747 46 H 0.046 0.954 47 H 0.036 0.964 48 H 0.047 0.953 49 H 0.093 0.907 50 H 0.109 0.891 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.117 -6.996 14.250 21.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.085 4.085 3 C -0.033 4.033 4 C -0.240 4.240 5 C -0.086 4.086 6 C -0.153 4.153 7 C -0.136 4.136 8 C 0.392 3.608 9 O -0.407 6.407 10 N -0.332 5.332 11 C -0.003 4.003 12 C -0.087 4.087 13 N -0.254 5.254 14 C -0.073 4.073 15 C 0.003 3.997 16 N -0.335 5.335 17 C -0.350 4.350 18 H 0.098 0.902 19 C -0.204 4.204 20 N -0.568 5.568 21 Si 0.741 3.259 22 H -0.217 1.217 23 H -0.216 1.216 24 H -0.205 1.205 25 C 0.000 4.000 26 C -0.090 4.090 27 C -0.025 4.025 28 O -0.049 6.049 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.104 0.896 33 H 0.114 0.886 34 H 0.171 0.829 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.107 0.893 38 H 0.095 0.905 39 H 0.112 0.888 40 H 0.106 0.894 41 H 0.059 0.941 42 H 0.118 0.882 43 H 0.047 0.953 44 H 0.088 0.912 45 H 0.063 0.937 46 H 0.064 0.936 47 H 0.054 0.946 48 H 0.065 0.935 49 H 0.111 0.889 50 H 0.126 0.874 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 15.423 -6.650 13.818 21.749 hybrid contribution -1.829 0.050 0.072 1.831 sum 13.594 -6.600 13.889 20.525 Atomic orbital electron populations 1.21811 0.93330 1.02739 1.03152 1.20216 0.96818 0.87022 1.04450 1.22983 1.00508 0.95105 0.84704 1.21422 1.08971 0.93933 0.99654 1.20578 0.99200 0.96685 0.92115 1.20442 1.02452 0.94460 0.97907 1.21779 1.11877 0.85911 0.94018 1.16665 0.78507 0.84587 0.81027 1.90808 1.45234 1.29126 1.75506 1.48086 1.63533 1.16070 1.05558 1.21815 0.97730 0.89636 0.91085 1.22418 0.96549 0.92693 0.97073 1.62040 1.40222 1.08187 1.14903 1.24274 0.89315 0.99590 0.94163 1.22990 0.89206 0.97612 0.89893 1.45836 1.03181 1.56416 1.28109 1.19011 0.85490 1.21152 1.09317 0.90226 1.24795 0.97915 0.99744 0.97923 1.69835 1.27854 1.34595 1.24484 0.86118 0.83114 0.77035 0.79606 1.21699 1.21600 1.20508 1.22645 0.85565 0.94330 0.97416 1.22562 0.95377 0.97291 0.93747 1.22497 0.96733 0.85447 0.97818 1.84170 1.65093 1.22304 1.33354 0.91307 0.92072 0.91755 0.89595 0.88639 0.82950 0.90896 0.91548 0.89313 0.90506 0.88761 0.89417 0.94096 0.88221 0.95334 0.91151 0.93712 0.93617 0.94631 0.93465 0.88915 0.87377 0.90469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.90 37.16 0.37 -0.74 16 2 C -0.05 -0.33 6.47 -27.88 -0.18 -0.51 16 3 C 0.02 0.19 6.57 -35.41 -0.23 -0.04 16 4 C -0.22 -2.25 10.73 -39.89 -0.43 -2.68 16 5 C -0.08 -1.02 6.20 -104.43 -0.65 -1.66 16 6 C -0.10 -1.03 9.90 36.00 0.36 -0.67 16 7 C -0.08 -1.16 6.86 -36.80 -0.25 -1.41 16 8 C 0.60 8.96 7.67 -12.86 -0.10 8.87 16 9 O -0.53 -8.67 14.19 5.19 0.07 -8.60 16 10 N -0.60 -8.28 3.01 -174.01 -0.52 -8.81 16 11 C 0.12 1.52 6.59 -3.61 -0.02 1.50 16 12 C 0.04 0.58 5.61 -3.70 -0.02 0.56 16 13 N -0.53 -8.20 4.76 -228.24 -1.09 -9.29 16 14 C 0.04 0.66 4.03 -69.92 -0.28 0.38 16 15 C 0.13 3.03 6.88 -2.84 -0.02 3.01 16 16 N -0.61 -15.55 3.70 -177.87 -0.66 -16.21 16 17 C -0.22 -6.23 10.69 -15.06 -0.16 -6.40 16 18 H 0.08 2.16 7.83 -52.48 -0.41 1.74 16 19 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 20 N -0.92 -27.44 11.36 55.49 0.63 -26.81 16 21 Si 0.91 22.16 29.56 -169.99 -5.02 17.13 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 25 C 0.13 2.57 8.42 -2.97 -0.02 2.55 16 26 C 0.04 0.59 4.47 -3.70 -0.02 0.57 16 27 C 0.10 1.25 6.46 -3.60 -0.02 1.23 16 28 O -0.15 -1.87 7.09 5.01 0.04 -1.84 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.15 1.16 8.06 -52.48 -0.42 0.74 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.09 1.08 6.32 -51.93 -0.33 0.75 16 38 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.09 1.20 7.08 -51.93 -0.37 0.83 16 40 H 0.09 1.10 8.04 -51.93 -0.42 0.69 16 41 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.10 1.85 8.04 -51.93 -0.42 1.44 16 43 H 0.03 0.69 5.65 -51.93 -0.29 0.40 16 44 H 0.07 1.86 7.08 -51.93 -0.37 1.50 16 45 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 46 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 47 H 0.04 0.70 6.22 -51.93 -0.32 0.37 16 48 H 0.05 0.82 6.45 -51.93 -0.33 0.49 16 49 H 0.09 1.44 6.06 -51.93 -0.31 1.13 16 50 H 0.11 1.37 3.87 -54.92 -0.21 1.16 16 51 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 396.49 15.07 5.98 5.98 Total: -1.00 -32.72 396.49 -10.36 -43.07 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -8.00 Total: 1.13 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: -1.78 Total: 4.24 kcal Atomic # 7 Polarization: -59.48 SS G_CDS: -1.64 Total: -61.11 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.11 Total: -10.44 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.72 -10.36 -43.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941639445.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.951 kcal (2) G-P(sol) polarization free energy of solvation -32.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds