Wall clock time and date at job start Wed Apr 1 2020 05:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47384 * 2 1 4 4 O 1.33490 * 126.82659 * 270.00035 * 3 2 1 5 5 N 1.20668 * 113.15423 * 179.97438 * 4 3 2 6 6 C 1.30012 * 112.30102 * 359.73442 * 5 4 3 7 7 C 1.50699 * 127.33626 * 180.27362 * 6 5 4 8 8 C 1.37363 * 126.82755 * 89.99383 * 3 2 1 9 9 C 1.47394 * 128.56888 * 359.97076 * 8 3 2 10 10 O 1.21604 * 119.99943 * 89.99103 * 9 8 3 11 11 N 1.34773 * 119.99987 * 269.99986 * 9 8 3 12 12 C 1.43510 * 122.55164 * 0.02562 * 11 9 8 13 13 C 1.51723 * 114.25727 * 122.92255 * 12 11 9 14 14 C 1.51161 * 111.88558 * 82.64592 * 13 12 11 15 15 H 1.08999 * 110.22913 * 34.32129 * 14 13 12 16 16 C 1.53398 * 110.92969 * 156.74548 * 14 13 12 17 17 N 1.46599 * 108.10661 * 102.74363 * 16 14 13 18 18 C 1.36935 * 125.31610 * 178.64696 * 17 16 14 19 19 H 1.08002 * 120.00358 * 349.99639 * 18 17 16 20 20 C 1.38821 * 120.00084 * 169.99568 * 18 17 16 21 21 N 1.31621 * 119.99562 * 350.54370 * 20 18 17 22 22 Si 1.86790 * 120.00188 * 170.54404 * 20 18 17 23 23 H 1.48502 * 109.47362 * 94.62633 * 22 20 18 24 24 H 1.48506 * 109.47203 * 214.63073 * 22 20 18 25 25 H 1.48504 * 109.47401 * 334.62583 * 22 20 18 26 26 C 1.46661 * 109.36577 * 358.65122 * 17 16 14 27 27 C 1.54185 * 106.90009 * 18.24939 * 26 17 16 28 28 H 1.09001 * 111.45153 * 91.58213 * 27 26 17 29 29 C 1.51855 * 109.37174 * 214.09952 * 27 26 17 30 30 C 1.49544 * 122.54846 * 179.97438 * 11 9 8 31 31 H 1.08993 * 109.47276 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47267 * 300.00554 * 1 2 3 33 33 H 1.09003 * 109.46734 * 60.00107 * 1 2 3 34 34 H 1.09000 * 109.47148 * 239.99952 * 2 1 3 35 35 H 1.09001 * 109.47256 * 119.99890 * 2 1 3 36 36 H 1.09010 * 109.46585 * 270.14766 * 7 6 5 37 37 H 1.08998 * 109.47233 * 30.14315 * 7 6 5 38 38 H 1.08996 * 109.47340 * 150.14756 * 7 6 5 39 39 H 1.08995 * 108.52660 * 244.16404 * 12 11 9 40 40 H 1.09000 * 108.52120 * 1.84352 * 12 11 9 41 41 H 1.09006 * 108.99559 * 203.26324 * 13 12 11 42 42 H 1.09000 * 109.00006 * 322.10679 * 13 12 11 43 43 H 1.09004 * 109.74191 * 222.40993 * 16 14 13 44 44 H 1.08999 * 109.74907 * 343.06880 * 16 14 13 45 45 H 0.96997 * 119.99477 * 180.02562 * 21 20 18 46 46 H 1.08999 * 109.96629 * 137.64619 * 26 17 16 47 47 H 1.09006 * 109.96603 * 258.86467 * 26 17 16 48 48 H 1.09006 * 109.00200 * 54.38912 * 29 27 26 49 49 H 1.08995 * 109.00687 * 295.52766 * 29 27 26 50 50 H 1.09007 * 110.26503 * 131.26183 * 30 11 9 51 51 H 1.08998 * 110.26947 * 9.16735 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2991 2.1752 -1.0685 5 7 2.6895 3.2808 -0.7833 6 6 2.7489 3.4667 0.5021 7 6 3.1818 4.7156 1.2259 8 6 2.3068 2.1972 1.0995 9 6 2.1822 1.8470 2.5258 10 8 3.1235 1.3510 3.1146 11 7 1.0250 2.0765 3.1774 12 6 -0.1198 2.6582 2.5366 13 6 -1.3747 1.8088 2.6115 14 6 -2.1015 1.9919 3.9242 15 1 -1.9988 3.0199 4.2718 16 6 -3.5842 1.6234 3.7858 17 7 -3.7815 0.2976 4.3794 18 6 -4.9798 -0.3591 4.4693 19 1 -5.8982 0.1587 4.2352 20 6 -5.0140 -1.6904 4.8612 21 7 -3.8944 -2.3744 4.9662 22 14 -6.6488 -2.5108 5.2397 23 1 -7.1415 -3.2149 4.0286 24 1 -6.4682 -3.4894 6.3421 25 1 -7.6367 -1.4805 5.6495 26 6 -2.4951 -0.2155 4.8620 27 6 -1.5465 0.9940 4.9817 28 1 -1.5832 1.4322 5.9790 29 6 -0.1314 0.5599 4.6425 30 6 0.8358 1.7433 4.6230 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 4.2570 4.6790 1.4023 37 1 2.9427 5.5887 0.6189 38 1 2.6592 4.7822 2.1801 39 1 -0.3253 3.6217 3.0029 40 1 0.1195 2.8268 1.4867 41 1 -2.0411 2.0876 1.7951 42 1 -1.1001 0.7596 2.5026 43 1 -4.1964 2.3567 4.3107 44 1 -3.8609 1.5999 2.7318 45 1 -3.9184 -3.3047 5.2397 46 1 -2.6242 -0.6862 5.8366 47 1 -2.0918 -0.9368 4.1511 48 1 -0.1314 0.0853 3.6611 49 1 0.2061 -0.1624 5.3858 50 1 0.4039 2.5924 5.1528 51 1 1.7874 1.4603 5.0729 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000946887495.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:31 Heat of formation + Delta-G solvation = 48.658740 kcal Electronic energy + Delta-G solvation = -32765.695142 eV Core-core repulsion = 28668.958364 eV Total energy + Delta-G solvation = -4096.736779 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -45.06120 -40.43084 -38.57963 -35.97653 -35.05151 -34.75131 -33.14656 -32.35362 -30.91734 -30.34515 -29.06112 -27.76913 -27.42752 -25.26669 -24.17914 -23.64599 -23.07767 -22.35111 -20.56199 -20.16125 -19.46066 -18.39750 -18.01061 -17.77498 -16.90733 -16.70436 -16.06371 -15.58570 -15.08091 -14.82998 -14.59946 -14.27891 -14.13530 -13.74809 -13.68889 -13.54112 -13.37867 -13.16880 -13.15423 -12.93257 -12.68865 -12.59374 -12.29559 -11.84443 -11.78258 -11.70850 -11.43232 -11.34490 -11.17475 -11.07844 -10.88419 -10.81693 -10.67622 -10.34197 -10.13016 -10.03428 -9.96555 -9.80049 -9.73855 -9.58630 -9.47504 -8.74520 -8.55192 -6.79492 -5.76638 -3.08951 1.12468 1.70146 2.26783 2.58015 3.00092 3.37352 3.43737 3.45397 3.85375 4.01308 4.45731 4.48041 4.65494 4.74382 4.86883 4.93873 4.96316 4.99814 5.08016 5.17460 5.21791 5.23949 5.27105 5.35174 5.36131 5.46111 5.51784 5.53664 5.62466 5.69379 5.70519 5.73621 5.76647 5.80894 5.93548 6.01892 6.02493 6.15184 6.26446 6.36088 6.38734 6.50987 6.57127 6.63257 6.73875 6.98493 7.34509 7.49648 7.60846 7.77859 7.95945 8.02204 8.26321 9.20038 9.81771 10.47686 11.35899 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017345 B = 0.003001 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.879700 B = 9329.432407 C = 9783.594658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.049 4.049 3 C 0.026 3.974 4 O 0.096 5.904 5 N -0.357 5.357 6 C 0.052 3.948 7 C -0.076 4.076 8 C -0.246 4.246 9 C 0.607 3.393 10 O -0.529 6.529 11 N -0.595 5.595 12 C 0.108 3.892 13 C -0.130 4.130 14 C -0.090 4.090 15 H 0.066 0.934 16 C 0.142 3.858 17 N -0.600 5.600 18 C -0.231 4.231 19 H 0.075 0.925 20 C -0.006 4.006 21 N -0.916 5.916 22 Si 0.908 3.092 23 H -0.289 1.289 24 H -0.290 1.290 25 H -0.281 1.281 26 C 0.184 3.816 27 C -0.109 4.109 28 H 0.067 0.933 29 C -0.127 4.127 30 C 0.115 3.885 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.064 0.936 40 H 0.069 0.931 41 H 0.073 0.927 42 H 0.082 0.918 43 H 0.019 0.981 44 H 0.021 0.979 45 H 0.252 0.748 46 H 0.053 0.947 47 H 0.032 0.968 48 H 0.075 0.925 49 H 0.069 0.931 50 H 0.081 0.919 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.552 11.191 -7.469 18.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.087 4.087 3 C -0.037 4.037 4 O 0.035 5.965 5 N -0.064 5.064 6 C -0.110 4.110 7 C -0.133 4.133 8 C -0.253 4.253 9 C 0.393 3.607 10 O -0.405 6.405 11 N -0.328 5.328 12 C -0.016 4.016 13 C -0.168 4.168 14 C -0.109 4.109 15 H 0.085 0.915 16 C 0.016 3.984 17 N -0.326 5.326 18 C -0.359 4.359 19 H 0.093 0.907 20 C -0.202 4.202 21 N -0.563 5.563 22 Si 0.739 3.261 23 H -0.216 1.216 24 H -0.216 1.216 25 H -0.206 1.206 26 C 0.059 3.941 27 C -0.129 4.129 28 H 0.086 0.914 29 C -0.165 4.165 30 C -0.006 4.006 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.113 0.887 35 H 0.118 0.882 36 H 0.103 0.897 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.082 0.918 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.101 0.899 43 H 0.037 0.963 44 H 0.039 0.961 45 H 0.062 0.938 46 H 0.071 0.929 47 H 0.050 0.950 48 H 0.093 0.907 49 H 0.088 0.912 50 H 0.099 0.901 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 13.263 11.468 -8.181 19.348 hybrid contribution -1.057 -0.746 0.839 1.542 sum 12.205 10.722 -7.342 17.828 Atomic orbital electron populations 1.21997 0.92286 1.04038 1.03560 1.20313 0.97534 0.85526 1.05296 1.24747 0.97640 0.96387 0.84972 1.84530 1.61565 1.17424 1.32984 1.73613 1.17475 0.98752 1.16512 1.24718 1.00754 0.96444 0.89074 1.20204 1.02431 0.91206 0.99495 1.21842 1.12865 0.95441 0.95139 1.16759 0.82173 0.77943 0.83821 1.90813 1.38329 1.43700 1.67670 1.47949 1.11485 1.61562 1.11777 1.20785 0.86347 0.96601 0.97879 1.21589 0.95149 1.01649 0.98408 1.21752 0.96030 0.98514 0.94638 0.91524 1.21124 0.92263 0.88934 0.96083 1.44157 1.04981 1.15390 1.68072 1.19003 0.84007 0.92700 1.40235 0.90730 1.24807 0.97068 0.96057 1.02300 1.69971 1.24626 1.08749 1.52994 0.86164 0.83046 0.79170 0.77743 1.21645 1.21638 1.20642 1.21066 0.83375 0.90389 0.99234 1.22415 0.94407 0.98419 0.97653 0.91415 1.21861 0.94355 0.97143 1.03123 1.22371 1.00448 0.98438 0.79329 0.90400 0.90990 0.91857 0.88695 0.88225 0.89659 0.89912 0.89936 0.91761 0.91223 0.90860 0.89939 0.96272 0.96123 0.93772 0.92854 0.94985 0.90675 0.91230 0.90066 0.89211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.58 9.89 37.16 0.37 -1.21 16 2 C -0.05 -0.46 6.38 -27.88 -0.18 -0.64 16 3 C 0.03 0.30 6.79 -34.62 -0.24 0.06 16 4 O 0.10 1.15 11.06 18.66 0.21 1.36 16 5 N -0.36 -4.49 12.01 34.78 0.42 -4.07 16 6 C 0.05 0.61 7.59 -79.76 -0.61 0.01 16 7 C -0.08 -0.65 10.49 36.01 0.38 -0.27 16 8 C -0.25 -3.06 4.30 -102.89 -0.44 -3.50 16 9 C 0.61 8.33 7.54 -12.53 -0.09 8.23 16 10 O -0.53 -8.92 16.78 5.27 0.09 -8.83 16 11 N -0.60 -7.26 2.61 -175.63 -0.46 -7.71 16 12 C 0.11 1.19 5.33 -6.27 -0.03 1.16 16 13 C -0.13 -1.69 3.66 -28.31 -0.10 -1.79 16 14 C -0.09 -1.36 2.78 -89.94 -0.25 -1.61 16 15 H 0.07 0.88 7.68 -51.93 -0.40 0.48 16 16 C 0.14 2.76 6.82 -3.78 -0.03 2.73 16 17 N -0.60 -14.61 3.38 -172.05 -0.58 -15.19 16 18 C -0.23 -6.27 10.21 -15.06 -0.15 -6.42 16 19 H 0.07 1.97 7.85 -52.49 -0.41 1.56 16 20 C -0.01 -0.15 5.40 -17.43 -0.09 -0.25 16 21 N -0.92 -26.15 10.61 55.49 0.59 -25.57 16 22 Si 0.91 21.64 29.56 -169.99 -5.03 16.62 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 C 0.18 4.16 4.85 -3.33 -0.02 4.15 16 27 C -0.11 -1.81 2.93 -89.18 -0.26 -2.07 16 28 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 29 C -0.13 -1.81 4.50 -27.39 -0.12 -1.94 16 30 C 0.11 1.40 6.17 -2.42 -0.01 1.38 16 31 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.80 4.67 -51.93 -0.24 0.56 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.10 1.01 8.11 -51.93 -0.42 0.59 16 36 H 0.08 0.67 8.14 -51.92 -0.42 0.25 16 37 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.64 7.68 -51.93 -0.40 0.24 16 40 H 0.07 0.75 6.32 -51.93 -0.33 0.42 16 41 H 0.07 0.92 7.53 -51.93 -0.39 0.53 16 42 H 0.08 1.22 4.29 -51.93 -0.22 1.00 16 43 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 44 H 0.02 0.41 7.40 -51.93 -0.38 0.02 16 45 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 46 H 0.05 1.38 7.23 -51.93 -0.38 1.00 16 47 H 0.03 0.80 7.36 -51.93 -0.38 0.42 16 48 H 0.07 1.17 5.47 -51.93 -0.28 0.88 16 49 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 50 H 0.08 0.87 7.81 -51.93 -0.41 0.47 16 51 H 0.09 1.13 7.31 -51.93 -0.38 0.75 16 LS Contribution 391.28 15.07 5.90 5.90 Total: -1.00 -31.77 391.28 -8.72 -40.49 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -7.97 Total: -1.00 kcal Atomic # 6 Polarization: -0.10 SS G_CDS: -1.89 Total: -1.99 kcal Atomic # 7 Polarization: -52.51 SS G_CDS: -0.03 Total: -52.54 kcal Atomic # 8 Polarization: -7.76 SS G_CDS: 0.29 Total: -7.47 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.03 Total: 16.62 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.77 -8.72 -40.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000946887495.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.147 kcal (2) G-P(sol) polarization free energy of solvation -31.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds