Wall clock time and date at job start Wed Apr 1 2020 05:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47384 * 2 1 4 4 O 1.33490 * 126.82659 * 270.00035 * 3 2 1 5 5 N 1.20668 * 113.15423 * 179.97438 * 4 3 2 6 6 C 1.30012 * 112.30102 * 359.73442 * 5 4 3 7 7 C 1.50699 * 127.33626 * 180.27362 * 6 5 4 8 8 C 1.37363 * 126.82755 * 89.99383 * 3 2 1 9 9 C 1.47394 * 128.56888 * 359.97076 * 8 3 2 10 10 O 1.21604 * 119.99943 * 89.99103 * 9 8 3 11 11 N 1.34773 * 119.99987 * 269.99986 * 9 8 3 12 12 C 1.43510 * 122.55164 * 0.02562 * 11 9 8 13 13 C 1.51723 * 114.25727 * 122.92255 * 12 11 9 14 14 C 1.51161 * 111.88558 * 82.64592 * 13 12 11 15 15 H 1.08999 * 110.22913 * 34.32129 * 14 13 12 16 16 C 1.53398 * 110.92969 * 156.74548 * 14 13 12 17 17 N 1.46599 * 108.10661 * 102.74363 * 16 14 13 18 18 C 1.36935 * 125.31610 * 178.64696 * 17 16 14 19 19 H 1.08002 * 120.00358 * 349.99639 * 18 17 16 20 20 C 1.38821 * 120.00084 * 169.99568 * 18 17 16 21 21 N 1.31621 * 119.99562 * 350.54370 * 20 18 17 22 22 Si 1.86790 * 120.00188 * 170.54404 * 20 18 17 23 23 H 1.48502 * 109.47362 * 94.62633 * 22 20 18 24 24 H 1.48506 * 109.47203 * 214.63073 * 22 20 18 25 25 H 1.48504 * 109.47401 * 334.62583 * 22 20 18 26 26 C 1.46661 * 109.36577 * 358.65122 * 17 16 14 27 27 C 1.54185 * 106.90009 * 18.24939 * 26 17 16 28 28 H 1.09001 * 111.45153 * 91.58213 * 27 26 17 29 29 C 1.51855 * 109.37174 * 214.09952 * 27 26 17 30 30 C 1.49544 * 122.54846 * 179.97438 * 11 9 8 31 31 H 1.08993 * 109.47276 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47267 * 300.00554 * 1 2 3 33 33 H 1.09003 * 109.46734 * 60.00107 * 1 2 3 34 34 H 1.09000 * 109.47148 * 239.99952 * 2 1 3 35 35 H 1.09001 * 109.47256 * 119.99890 * 2 1 3 36 36 H 1.09010 * 109.46585 * 270.14766 * 7 6 5 37 37 H 1.08998 * 109.47233 * 30.14315 * 7 6 5 38 38 H 1.08996 * 109.47340 * 150.14756 * 7 6 5 39 39 H 1.08995 * 108.52660 * 244.16404 * 12 11 9 40 40 H 1.09000 * 108.52120 * 1.84352 * 12 11 9 41 41 H 1.09006 * 108.99559 * 203.26324 * 13 12 11 42 42 H 1.09000 * 109.00006 * 322.10679 * 13 12 11 43 43 H 1.09004 * 109.74191 * 222.40993 * 16 14 13 44 44 H 1.08999 * 109.74907 * 343.06880 * 16 14 13 45 45 H 0.96997 * 119.99477 * 180.02562 * 21 20 18 46 46 H 1.08999 * 109.96629 * 137.64619 * 26 17 16 47 47 H 1.09006 * 109.96603 * 258.86467 * 26 17 16 48 48 H 1.09006 * 109.00200 * 54.38912 * 29 27 26 49 49 H 1.08995 * 109.00687 * 295.52766 * 29 27 26 50 50 H 1.09007 * 110.26503 * 131.26183 * 30 11 9 51 51 H 1.08998 * 110.26947 * 9.16735 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2991 2.1752 -1.0685 5 7 2.6895 3.2808 -0.7833 6 6 2.7489 3.4667 0.5021 7 6 3.1818 4.7156 1.2259 8 6 2.3068 2.1972 1.0995 9 6 2.1822 1.8470 2.5258 10 8 3.1235 1.3510 3.1146 11 7 1.0250 2.0765 3.1774 12 6 -0.1198 2.6582 2.5366 13 6 -1.3747 1.8088 2.6115 14 6 -2.1015 1.9919 3.9242 15 1 -1.9988 3.0199 4.2718 16 6 -3.5842 1.6234 3.7858 17 7 -3.7815 0.2976 4.3794 18 6 -4.9798 -0.3591 4.4693 19 1 -5.8982 0.1587 4.2352 20 6 -5.0140 -1.6904 4.8612 21 7 -3.8944 -2.3744 4.9662 22 14 -6.6488 -2.5108 5.2397 23 1 -7.1415 -3.2149 4.0286 24 1 -6.4682 -3.4894 6.3421 25 1 -7.6367 -1.4805 5.6495 26 6 -2.4951 -0.2155 4.8620 27 6 -1.5465 0.9940 4.9817 28 1 -1.5832 1.4322 5.9790 29 6 -0.1314 0.5599 4.6425 30 6 0.8358 1.7433 4.6230 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 4.2570 4.6790 1.4023 37 1 2.9427 5.5887 0.6189 38 1 2.6592 4.7822 2.1801 39 1 -0.3253 3.6217 3.0029 40 1 0.1195 2.8268 1.4867 41 1 -2.0411 2.0876 1.7951 42 1 -1.1001 0.7596 2.5026 43 1 -4.1964 2.3567 4.3107 44 1 -3.8609 1.5999 2.7318 45 1 -3.9184 -3.3047 5.2397 46 1 -2.6242 -0.6862 5.8366 47 1 -2.0918 -0.9368 4.1511 48 1 -0.1314 0.0853 3.6611 49 1 0.2061 -0.1624 5.3858 50 1 0.4039 2.5924 5.1528 51 1 1.7874 1.4603 5.0729 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000946887495.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:30 Heat of formation + Delta-G solvation = 31.114833 kcal Electronic energy + Delta-G solvation = -32766.455903 eV Core-core repulsion = 28668.958364 eV Total energy + Delta-G solvation = -4097.497540 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -45.95402 -41.55739 -39.89370 -37.33490 -35.92950 -35.59959 -34.81717 -33.54799 -32.49347 -31.37891 -29.82351 -29.15907 -28.88898 -26.55797 -25.57394 -24.60612 -24.28724 -23.44553 -21.95987 -21.40897 -20.41496 -19.70114 -19.00124 -18.85736 -18.64826 -17.70117 -17.04786 -16.83468 -16.63789 -16.11784 -15.81370 -15.42298 -15.33544 -15.09490 -14.63197 -14.52400 -14.38491 -14.34979 -14.15101 -13.88937 -13.80414 -13.66219 -13.45679 -13.38608 -13.15803 -12.87720 -12.71179 -12.57888 -12.49510 -12.44055 -12.36182 -12.10294 -11.86032 -11.80796 -11.74428 -11.46758 -11.27206 -11.19032 -10.96678 -10.90601 -10.62662 -10.42698 -9.75826 -8.79081 -7.85611 -5.19232 0.22531 0.82495 1.23311 1.46121 1.47140 1.56554 1.64780 2.06591 2.50959 3.03714 3.17589 3.32824 3.53496 3.68205 3.71538 3.78969 3.86890 3.95487 4.03683 4.10422 4.16701 4.17984 4.23815 4.27778 4.47071 4.47682 4.57974 4.63832 4.65980 4.69508 4.72661 4.74242 4.75978 4.90986 4.92640 4.96999 5.01150 5.07546 5.08886 5.11657 5.13721 5.19971 5.29145 5.35304 5.43071 5.53519 5.64113 5.75287 5.84637 6.25203 6.34163 6.92552 7.13766 7.14192 7.84553 8.47355 9.25309 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017345 B = 0.003001 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.879700 B = 9329.432407 C = 9783.594658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.046 4.046 3 C 0.034 3.966 4 O 0.091 5.909 5 N -0.374 5.374 6 C 0.056 3.944 7 C -0.077 4.077 8 C -0.265 4.265 9 C 0.611 3.389 10 O -0.566 6.566 11 N -0.589 5.589 12 C 0.113 3.887 13 C -0.122 4.122 14 C -0.077 4.077 15 H 0.104 0.896 16 C 0.134 3.866 17 N -0.622 5.622 18 C -0.244 4.244 19 H 0.077 0.923 20 C -0.062 4.062 21 N -0.945 5.945 22 Si 0.972 3.028 23 H -0.287 1.287 24 H -0.295 1.295 25 H -0.269 1.269 26 C 0.195 3.805 27 C -0.094 4.094 28 H 0.079 0.921 29 C -0.117 4.117 30 C 0.123 3.877 31 H 0.076 0.924 32 H 0.057 0.943 33 H 0.072 0.928 34 H 0.118 0.882 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.097 0.903 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.076 0.924 41 H 0.082 0.918 42 H 0.060 0.940 43 H 0.025 0.975 44 H 0.021 0.979 45 H 0.246 0.754 46 H 0.009 0.991 47 H -0.003 1.003 48 H 0.060 0.940 49 H 0.061 0.939 50 H 0.109 0.891 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.706 13.696 -7.967 20.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.084 4.084 3 C -0.030 4.030 4 O 0.032 5.968 5 N -0.082 5.082 6 C -0.106 4.106 7 C -0.135 4.135 8 C -0.272 4.272 9 C 0.399 3.601 10 O -0.445 6.445 11 N -0.320 5.320 12 C -0.010 4.010 13 C -0.160 4.160 14 C -0.095 4.095 15 H 0.122 0.878 16 C 0.010 3.990 17 N -0.348 5.348 18 C -0.373 4.373 19 H 0.095 0.905 20 C -0.255 4.255 21 N -0.593 5.593 22 Si 0.800 3.200 23 H -0.214 1.214 24 H -0.222 1.222 25 H -0.194 1.194 26 C 0.070 3.930 27 C -0.114 4.114 28 H 0.097 0.903 29 C -0.155 4.155 30 C 0.002 3.998 31 H 0.095 0.905 32 H 0.076 0.924 33 H 0.091 0.909 34 H 0.137 0.863 35 H 0.109 0.891 36 H 0.110 0.890 37 H 0.116 0.884 38 H 0.110 0.890 39 H 0.110 0.890 40 H 0.095 0.905 41 H 0.100 0.900 42 H 0.079 0.921 43 H 0.043 0.957 44 H 0.039 0.961 45 H 0.055 0.945 46 H 0.028 0.972 47 H 0.015 0.985 48 H 0.079 0.921 49 H 0.080 0.920 50 H 0.127 0.873 51 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 13.389 14.009 -8.702 21.243 hybrid contribution -1.161 -1.546 0.967 2.161 sum 12.229 12.463 -7.735 19.097 Atomic orbital electron populations 1.21952 0.92414 1.03904 1.03281 1.20365 0.97258 0.84789 1.06031 1.25003 0.96624 0.96671 0.84697 1.84519 1.61739 1.17471 1.33056 1.73609 1.18505 0.99073 1.17053 1.25190 0.99623 0.97024 0.88804 1.20366 1.02925 0.90339 0.99823 1.21824 1.14338 0.96374 0.94668 1.16865 0.81993 0.77170 0.84101 1.90795 1.39696 1.45462 1.68542 1.47945 1.11441 1.60865 1.11764 1.20791 0.84726 0.96866 0.98657 1.21497 0.96144 1.00898 0.97501 1.21737 0.92959 0.99693 0.95153 0.87788 1.21372 0.95479 0.86591 0.95606 1.44480 1.04671 1.17032 1.68630 1.19379 0.85406 0.93129 1.39381 0.90501 1.25597 1.00168 0.96858 1.02915 1.70180 1.26483 1.08511 1.54174 0.85171 0.79563 0.78096 0.77151 1.21409 1.22166 1.19417 1.20807 0.84215 0.92271 0.95689 1.22238 0.93992 0.96071 0.99067 0.90275 1.21729 0.93635 0.98116 1.02029 1.22327 0.99672 0.98195 0.79616 0.90525 0.92414 0.90867 0.86345 0.89120 0.88962 0.88390 0.89014 0.88975 0.90542 0.90004 0.92131 0.95709 0.96100 0.94511 0.97206 0.98498 0.92121 0.92025 0.87308 0.89407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.99 9.89 71.98 0.71 -2.28 16 2 C -0.05 -0.84 6.38 29.85 0.19 -0.65 16 3 C 0.03 0.73 6.79 25.48 0.17 0.90 16 4 O 0.09 2.06 11.06 77.00 0.85 2.91 16 5 N -0.37 -8.79 12.01 -44.77 -0.54 -9.32 16 6 C 0.06 1.20 7.59 45.16 0.34 1.54 16 7 C -0.08 -1.12 10.49 71.24 0.75 -0.37 16 8 C -0.26 -6.19 4.30 -18.74 -0.08 -6.27 16 9 C 0.61 15.90 7.54 86.65 0.65 16.56 16 10 O -0.57 -18.70 16.78 -4.04 -0.07 -18.77 16 11 N -0.59 -13.00 2.61 -827.82 -2.16 -15.17 16 12 C 0.11 2.13 5.33 86.51 0.46 2.59 16 13 C -0.12 -2.92 3.66 29.57 0.11 -2.81 16 14 C -0.08 -2.12 2.78 -10.36 -0.03 -2.14 16 15 H 0.10 2.20 7.68 -2.39 -0.02 2.18 16 16 C 0.13 5.05 6.82 86.49 0.59 5.63 16 17 N -0.62 -30.75 3.38 -698.24 -2.36 -33.11 16 18 C -0.24 -13.44 10.21 84.04 0.86 -12.58 16 19 H 0.08 4.09 7.85 -2.91 -0.02 4.06 16 20 C -0.06 -3.47 5.40 84.86 0.46 -3.02 16 21 N -0.94 -56.20 10.61 21.65 0.23 -55.97 16 22 Si 0.97 45.30 29.56 68.60 2.03 47.33 16 23 H -0.29 -13.18 7.11 99.48 0.71 -12.48 16 24 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 25 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 26 C 0.20 9.15 4.85 86.75 0.42 9.57 16 27 C -0.09 -3.03 2.93 -9.86 -0.03 -3.06 16 28 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 29 C -0.12 -3.28 4.50 30.17 0.14 -3.14 16 30 C 0.12 2.69 6.17 85.74 0.53 3.22 16 31 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.06 1.26 4.67 -2.39 -0.01 1.25 16 33 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.09 1.83 8.11 -2.39 -0.02 1.81 16 36 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 37 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.09 1.33 7.68 -2.39 -0.02 1.31 16 40 H 0.08 1.41 6.32 -2.39 -0.02 1.39 16 41 H 0.08 1.85 7.53 -2.38 -0.02 1.83 16 42 H 0.06 1.76 4.29 -2.39 -0.01 1.75 16 43 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.02 0.79 7.40 -2.39 -0.02 0.77 16 45 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 46 H 0.01 0.52 7.23 -2.39 -0.02 0.50 16 47 H 0.00 -0.16 7.36 -2.38 -0.02 -0.17 16 48 H 0.06 1.91 5.47 -2.38 -0.01 1.89 16 49 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 50 H 0.11 1.86 7.81 -2.38 -0.02 1.84 16 51 H 0.09 2.05 7.31 -2.39 -0.02 2.03 16 Total: -1.00 -71.76 391.28 5.16 -66.59 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: 0.94 Total: 11.82 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: 6.24 Total: 3.69 kcal Atomic # 7 Polarization: -108.73 SS G_CDS: -4.83 Total: -113.56 kcal Atomic # 8 Polarization: -16.65 SS G_CDS: 0.78 Total: -15.86 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -71.76 5.16 -66.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000946887495.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.708 kcal (2) G-P(sol) polarization free energy of solvation -71.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds