Wall clock time and date at job start Wed Apr 1 2020 04:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50702 * 109.46798 * 2 1 4 4 C 1.38014 * 119.51204 * 125.00001 * 3 2 1 5 5 C 1.39927 * 119.13319 * 179.97438 * 4 3 2 6 6 C 1.48167 * 120.89024 * 180.02562 * 5 4 3 7 7 O 1.21505 * 120.00094 * 322.26503 * 6 5 4 8 8 N 1.34780 * 119.99470 * 142.27160 * 6 5 4 9 9 C 1.46494 * 120.00113 * 4.82794 * 8 6 5 10 10 C 1.46506 * 119.99518 * 184.83315 * 8 6 5 11 11 H 1.08994 * 109.20271 * 359.97438 * 10 8 6 12 12 C 1.50121 * 109.20845 * 119.35714 * 10 8 6 13 13 C 1.52531 * 105.41417 * 218.02181 * 12 10 8 14 14 C 1.46231 * 114.27534 * 270.59648 * 13 12 10 15 15 N 1.50163 * 107.53797 * 58.41092 * 14 13 12 16 16 C 1.36940 * 120.54181 * 109.56248 * 15 14 13 17 17 H 1.08000 * 120.00076 * 154.87381 * 16 15 14 18 18 C 1.38810 * 119.99824 * 334.86905 * 16 15 14 19 19 N 1.31626 * 120.00085 * 347.65174 * 18 16 15 20 20 Si 1.86795 * 120.00028 * 167.65494 * 18 16 15 21 21 H 1.48492 * 109.47498 * 59.99744 * 20 18 16 22 22 H 1.48504 * 109.47336 * 180.02562 * 20 18 16 23 23 H 1.48510 * 109.46773 * 299.99444 * 20 18 16 24 24 C 1.43440 * 118.92267 * 289.58634 * 15 14 13 25 25 C 1.54845 * 109.20402 * 240.63712 * 10 8 6 26 26 C 1.39607 * 118.21414 * 0.02562 * 5 4 3 27 27 C 1.38855 * 118.95178 * 359.97438 * 26 5 4 28 28 O 1.35688 * 119.62262 * 179.97438 * 27 26 5 29 29 N 1.31883 * 119.51248 * 305.02057 * 3 2 1 30 30 H 1.08999 * 109.47402 * 60.00203 * 1 2 3 31 31 H 1.09002 * 109.47019 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47303 * 299.99853 * 1 2 3 33 33 H 1.08996 * 109.46869 * 239.99860 * 2 1 3 34 34 H 1.08998 * 109.46663 * 119.99773 * 2 1 3 35 35 H 1.08004 * 120.43210 * 359.97438 * 4 3 2 36 36 H 1.08996 * 109.47430 * 84.11053 * 9 8 6 37 37 H 1.09007 * 109.47152 * 204.11273 * 9 8 6 38 38 H 1.08998 * 109.47180 * 324.10824 * 9 8 6 39 39 H 1.08999 * 110.24921 * 336.99773 * 12 10 8 40 40 H 1.09003 * 110.24727 * 98.90843 * 12 10 8 41 41 H 1.08998 * 108.52389 * 31.83912 * 13 12 10 42 42 H 1.09004 * 108.51945 * 149.51452 * 13 12 10 43 43 H 1.09003 * 109.84651 * 177.91949 * 14 13 12 44 44 H 1.08996 * 109.85022 * 298.89812 * 14 13 12 45 45 H 0.96998 * 120.00123 * 180.02562 * 19 18 16 46 46 H 1.09004 * 108.15710 * 213.28378 * 24 15 14 47 47 H 1.09000 * 108.15934 * 330.05660 * 24 15 14 48 48 H 1.08997 * 109.35694 * 320.99472 * 25 10 8 49 49 H 1.08998 * 109.36032 * 80.57974 * 25 10 8 50 50 H 1.08002 * 120.52392 * 179.71984 * 26 5 4 51 51 H 0.96700 * 113.99573 * 90.00315 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.9084 1.8323 0.9839 5 6 3.3702 3.1531 0.9760 6 6 4.3118 3.6360 2.0130 7 8 4.1971 3.2568 3.1617 8 7 5.2955 4.4959 1.6821 9 6 5.3701 5.0353 0.3222 10 6 6.2902 4.8910 2.6826 11 1 6.0693 4.3900 3.6250 12 6 7.6549 4.4791 2.2117 13 6 8.3908 4.0098 3.4626 14 6 9.1142 5.0675 4.1670 15 7 8.1163 6.1245 4.5438 16 6 7.7581 6.3083 5.8527 17 1 7.3888 7.2684 6.1818 18 6 7.8694 5.2606 6.7564 19 7 8.0824 4.0365 6.3220 20 14 7.7167 5.5878 8.5891 21 1 6.3821 6.1709 8.8785 22 1 7.8726 4.3128 9.3344 23 1 8.7751 6.5401 9.0117 24 6 7.5441 6.9382 3.5104 25 6 6.2207 6.4236 2.8923 26 6 2.9198 4.0037 -0.0353 27 6 2.0381 3.5087 -0.9869 28 8 1.5912 4.3237 -1.9755 29 7 1.6279 2.2529 -0.9399 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.2334 1.1437 1.7499 36 1 4.7105 5.8988 0.2371 37 1 6.3949 5.3383 0.1072 38 1 5.0607 4.2701 -0.3897 39 1 7.5757 3.6640 1.4924 40 1 8.1714 5.3280 1.7637 41 1 7.6649 3.5714 4.1475 42 1 9.1044 3.2375 3.1752 43 1 9.5807 4.6622 5.0649 44 1 9.8756 5.4936 3.5137 45 1 8.1599 3.3044 6.9534 46 1 7.3638 7.9317 3.9211 47 1 8.2756 7.0324 2.7079 48 1 6.0557 6.9125 1.9322 49 1 5.3940 6.6595 3.5624 50 1 3.2488 5.0317 -0.0744 51 1 2.1440 4.3190 -2.7689 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000948621466.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:46 Heat of formation + Delta-G solvation = -22.666007 kcal Electronic energy + Delta-G solvation = -31810.045793 eV Core-core repulsion = 27710.216141 eV Total energy + Delta-G solvation = -4099.829652 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.14948 -40.90740 -39.32341 -38.27454 -36.93791 -35.29352 -34.26253 -33.32842 -33.27812 -31.80470 -30.49096 -28.28557 -27.90573 -26.39588 -25.61820 -25.17698 -24.19633 -23.10284 -21.67043 -21.07822 -20.15268 -19.54387 -18.67129 -18.18355 -17.65919 -17.44336 -17.05370 -16.94596 -16.49712 -16.25195 -15.70301 -15.58375 -15.49539 -15.03963 -14.95238 -14.88218 -14.38253 -14.18650 -14.03773 -13.84174 -13.64311 -13.49693 -13.15947 -13.13288 -12.98712 -12.85511 -12.74155 -12.69263 -12.38130 -12.36593 -12.02832 -11.97002 -11.94015 -11.69616 -11.57364 -11.31254 -11.23545 -11.09121 -10.96256 -10.43988 -10.41479 -9.91713 -9.66950 -8.60134 -7.79957 -5.25939 -0.39595 -0.15517 1.46023 1.46615 1.52929 1.54025 1.83618 2.45729 2.53466 2.54440 3.18683 3.33916 3.42753 3.62988 3.80923 3.82570 3.94536 4.08654 4.15607 4.16996 4.23862 4.37123 4.37930 4.44010 4.47927 4.58338 4.63279 4.65233 4.70795 4.78749 4.81722 4.88379 4.90113 4.91171 5.04355 5.06516 5.16333 5.18486 5.27811 5.28944 5.30733 5.43991 5.45294 5.49922 5.65570 5.66586 5.82604 6.21877 6.29613 6.45704 6.56800 6.80930 6.98613 7.20906 7.93926 8.41998 9.22683 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015370 B = 0.002794 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.323284 B =10019.273231 C =10910.826051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.074 4.074 3 C 0.155 3.845 4 C -0.144 4.144 5 C -0.066 4.066 6 C 0.543 3.457 7 O -0.579 6.579 8 N -0.597 5.597 9 C 0.060 3.940 10 C 0.159 3.841 11 H 0.052 0.948 12 C -0.104 4.104 13 C -0.120 4.120 14 C 0.167 3.833 15 N -0.604 5.604 16 C -0.258 4.258 17 H 0.061 0.939 18 C -0.047 4.047 19 N -0.918 5.918 20 Si 0.958 3.042 21 H -0.286 1.286 22 H -0.297 1.297 23 H -0.277 1.277 24 C 0.155 3.845 25 C -0.138 4.138 26 C -0.161 4.161 27 C 0.317 3.683 28 O -0.482 6.482 29 N -0.501 5.501 30 H 0.056 0.944 31 H 0.080 0.920 32 H 0.041 0.959 33 H 0.101 0.899 34 H 0.095 0.905 35 H 0.142 0.858 36 H 0.081 0.919 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.068 0.932 40 H 0.086 0.914 41 H 0.054 0.946 42 H 0.037 0.963 43 H 0.061 0.939 44 H 0.030 0.970 45 H 0.244 0.756 46 H 0.033 0.967 47 H 0.059 0.941 48 H 0.093 0.907 49 H 0.023 0.977 50 H 0.174 0.826 51 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.206 -2.843 -22.289 23.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.112 4.112 3 C 0.018 3.982 4 C -0.165 4.165 5 C -0.077 4.077 6 C 0.331 3.669 7 O -0.459 6.459 8 N -0.327 5.327 9 C -0.081 4.081 10 C 0.057 3.943 11 H 0.070 0.930 12 C -0.142 4.142 13 C -0.159 4.159 14 C 0.044 3.956 15 N -0.326 5.326 16 C -0.389 4.389 17 H 0.079 0.921 18 C -0.242 4.242 19 N -0.564 5.564 20 Si 0.788 3.212 21 H -0.213 1.213 22 H -0.223 1.223 23 H -0.203 1.203 24 C 0.027 3.973 25 C -0.180 4.180 26 C -0.182 4.182 27 C 0.137 3.863 28 O -0.292 6.292 29 N -0.222 5.222 30 H 0.075 0.925 31 H 0.099 0.901 32 H 0.061 0.939 33 H 0.119 0.881 34 H 0.113 0.887 35 H 0.159 0.841 36 H 0.099 0.901 37 H 0.114 0.886 38 H 0.106 0.894 39 H 0.087 0.913 40 H 0.105 0.895 41 H 0.073 0.927 42 H 0.056 0.944 43 H 0.079 0.921 44 H 0.048 0.952 45 H 0.053 0.947 46 H 0.051 0.949 47 H 0.078 0.922 48 H 0.111 0.889 49 H 0.042 0.958 50 H 0.191 0.809 51 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges -9.197 -3.234 -21.869 23.943 hybrid contribution 0.624 0.186 2.020 2.122 sum -8.574 -3.048 -19.849 21.835 Atomic orbital electron populations 1.21655 0.93669 1.02861 1.01689 1.20664 0.97304 0.88272 1.04916 1.21285 0.91658 0.96829 0.88459 1.22173 0.98657 0.95553 1.00084 1.20129 0.97456 0.95393 0.94730 1.18777 0.81342 0.79232 0.87512 1.90832 1.73229 1.59520 1.22294 1.48234 1.27228 1.43593 1.13691 1.22452 1.05094 0.99854 0.80651 1.21065 0.87110 0.95873 0.90261 0.92989 1.21296 0.94375 1.01200 0.97298 1.20738 1.00119 0.98938 0.96095 1.20132 0.89933 0.88290 0.97250 1.44391 1.45168 1.40845 1.02190 1.19375 1.38617 0.94743 0.86160 0.92087 1.25629 1.01965 0.94979 1.01642 1.70097 1.54813 0.98555 1.32985 0.85488 0.77788 0.76298 0.81664 1.21278 1.22292 1.20275 1.20513 0.92581 0.93151 0.91078 1.23154 1.00206 0.93999 1.00651 1.22749 0.97946 1.02797 0.94725 1.19034 0.90051 0.86429 0.90773 1.84777 1.55542 1.60742 1.28183 1.66848 1.24591 1.04320 1.26406 0.92498 0.90135 0.93950 0.88068 0.88700 0.84064 0.90083 0.88614 0.89432 0.91333 0.89531 0.92719 0.94386 0.92088 0.95204 0.94654 0.94904 0.92236 0.88888 0.95750 0.80888 0.71375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 9.77 71.98 0.70 -1.44 16 2 C -0.07 -1.14 6.33 29.85 0.19 -0.95 16 3 C 0.16 3.32 6.17 42.50 0.26 3.58 16 4 C -0.14 -3.62 9.34 22.63 0.21 -3.41 16 5 C -0.07 -1.77 5.30 -19.90 -0.11 -1.88 16 6 C 0.54 19.07 7.41 86.88 0.64 19.71 16 7 O -0.58 -27.21 16.26 -3.73 -0.06 -27.27 16 8 N -0.60 -17.96 2.62 -827.32 -2.17 -20.13 16 9 C 0.06 1.05 7.59 127.77 0.97 2.02 16 10 C 0.16 5.98 2.28 44.69 0.10 6.08 16 11 H 0.05 2.70 5.57 -2.39 -0.01 2.69 16 12 C -0.10 -3.48 4.42 29.51 0.13 -3.35 16 13 C -0.12 -5.15 4.99 28.35 0.14 -5.01 16 14 C 0.17 7.70 5.24 83.58 0.44 8.13 16 15 N -0.60 -29.22 2.60 -707.93 -1.84 -31.06 16 16 C -0.26 -14.23 9.65 84.03 0.81 -13.42 16 17 H 0.06 3.34 7.85 -2.91 -0.02 3.31 16 18 C -0.05 -2.62 5.08 84.86 0.43 -2.19 16 19 N -0.92 -53.78 9.11 21.65 0.20 -53.58 16 20 Si 0.96 46.45 29.57 68.60 2.03 48.48 16 21 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 22 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 23 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 24 C 0.16 6.01 5.18 87.58 0.45 6.46 16 25 C -0.14 -4.87 5.96 31.86 0.19 -4.68 16 26 C -0.16 -3.25 7.61 22.75 0.17 -3.07 16 27 C 0.32 6.23 7.74 84.79 0.66 6.89 16 28 O -0.48 -7.11 13.56 -90.06 -1.22 -8.33 16 29 N -0.50 -11.02 9.87 -297.16 -2.93 -13.95 16 30 H 0.06 0.97 7.94 -2.39 -0.02 0.95 16 31 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.09 1.26 7.86 -2.39 -0.02 1.24 16 35 H 0.14 3.64 7.94 -2.91 -0.02 3.62 16 36 H 0.08 1.08 6.84 -2.39 -0.02 1.06 16 37 H 0.10 1.39 7.30 -2.38 -0.02 1.37 16 38 H 0.09 1.22 5.88 -2.39 -0.01 1.21 16 39 H 0.07 2.07 7.93 -2.39 -0.02 2.05 16 40 H 0.09 2.49 6.29 -2.39 -0.02 2.48 16 41 H 0.05 2.94 5.33 -2.39 -0.01 2.92 16 42 H 0.04 1.51 8.14 -2.38 -0.02 1.49 16 43 H 0.06 3.26 5.94 -2.39 -0.01 3.25 16 44 H 0.03 1.21 8.12 -2.39 -0.02 1.19 16 45 H 0.24 14.23 8.31 -92.71 -0.77 13.46 16 46 H 0.03 1.28 7.99 -2.38 -0.02 1.26 16 47 H 0.06 1.95 6.88 -2.39 -0.02 1.93 16 48 H 0.09 2.42 7.13 -2.39 -0.02 2.40 16 49 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 50 H 0.17 2.69 5.25 -2.91 -0.02 2.68 16 51 H 0.42 1.49 9.06 -74.06 -0.67 0.82 16 Total: -1.00 -77.06 391.10 0.69 -76.37 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: 0.29 Total: 16.02 kcal Atomic # 6 Polarization: 7.07 SS G_CDS: 6.40 Total: 13.47 kcal Atomic # 7 Polarization: -111.98 SS G_CDS: -6.75 Total: -118.73 kcal Atomic # 8 Polarization: -34.32 SS G_CDS: -1.28 Total: -35.60 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.48 kcal Total: -77.06 0.69 -76.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948621466.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.704 kcal (2) G-P(sol) polarization free energy of solvation -77.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds