Wall clock time and date at job start Wed Apr 1 2020 05:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50702 * 109.47272 * 2 1 4 4 N 1.30014 * 127.33521 * 90.02393 * 3 2 1 5 5 O 1.20649 * 112.30234 * 179.97438 * 4 3 2 6 6 C 1.33497 * 113.15745 * 0.02562 * 5 4 3 7 7 C 1.37359 * 106.34178 * 0.02562 * 6 5 4 8 8 C 1.47394 * 128.56639 * 180.02562 * 7 6 5 9 9 O 1.21601 * 120.00423 * 147.97576 * 8 7 6 10 10 N 1.34782 * 119.99577 * 327.96966 * 8 7 6 11 11 C 1.46931 * 120.64162 * 184.13066 * 10 8 7 12 12 C 1.53616 * 108.53964 * 126.32494 * 11 10 8 13 13 C 1.53048 * 109.25937 * 54.87182 * 12 11 10 14 14 C 1.53025 * 109.44058 * 58.56872 * 13 12 11 15 15 C 1.53196 * 109.33345 * 181.23527 * 14 13 12 16 16 N 1.46934 * 108.77825 * 305.37352 * 15 14 13 17 17 C 1.36933 * 120.64077 * 233.61740 * 16 15 14 18 18 H 1.07994 * 120.00741 * 21.78680 * 17 16 15 19 19 C 1.38816 * 119.99856 * 201.78610 * 17 16 15 20 20 N 1.31626 * 120.00017 * 16.22797 * 19 17 16 21 21 Si 1.86806 * 120.00229 * 196.22140 * 19 17 16 22 22 H 1.48500 * 109.46869 * 90.00239 * 21 19 17 23 23 H 1.48498 * 109.47075 * 210.00374 * 21 19 17 24 24 H 1.48493 * 109.46838 * 330.00404 * 21 19 17 25 25 C 1.46921 * 118.71567 * 53.63716 * 16 15 14 26 26 C 1.53043 * 109.39090 * 178.60057 * 13 12 11 27 27 C 1.53032 * 109.54408 * 298.55848 * 13 12 11 28 28 C 1.46929 * 120.64583 * 4.41195 * 10 8 7 29 29 H 1.09001 * 109.47089 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46837 * 299.99791 * 1 2 3 31 31 H 1.09004 * 109.46839 * 59.99751 * 1 2 3 32 32 H 1.09001 * 109.47542 * 239.99963 * 2 1 3 33 33 H 1.09004 * 109.47360 * 120.00174 * 2 1 3 34 34 H 1.08005 * 126.82896 * 179.97438 * 6 5 4 35 35 H 1.08998 * 109.58493 * 246.16355 * 11 10 8 36 36 H 1.09008 * 109.58505 * 6.58719 * 11 10 8 37 37 H 1.08997 * 109.63230 * 294.86833 * 12 11 10 38 38 H 1.09003 * 109.42448 * 174.74109 * 12 11 10 39 39 H 1.08996 * 109.49925 * 301.18815 * 14 13 12 40 40 H 1.08997 * 109.49647 * 61.28034 * 14 13 12 41 41 H 1.09000 * 109.58558 * 185.58966 * 15 14 13 42 42 H 1.08989 * 109.70318 * 65.23025 * 15 14 13 43 43 H 0.97001 * 119.99792 * 179.97438 * 20 19 17 44 44 H 1.09000 * 109.59163 * 186.56353 * 25 16 15 45 45 H 1.09004 * 109.70105 * 66.21517 * 25 16 15 46 46 H 1.08998 * 109.49618 * 298.68281 * 26 13 12 47 47 H 1.09000 * 109.49639 * 58.76959 * 26 13 12 48 48 H 1.09007 * 109.49344 * 301.34445 * 27 13 12 49 49 H 1.09004 * 109.49458 * 181.25983 * 27 13 12 50 50 H 1.08999 * 109.58741 * 353.40711 * 28 10 8 51 51 H 1.09001 * 109.58686 * 113.68634 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2956 2.1641 1.0337 5 8 2.6844 3.2625 0.7208 6 6 2.7466 3.4406 -0.6008 7 6 2.3284 2.2624 -1.1696 8 6 2.2081 1.9241 -2.5992 9 8 2.3951 0.7817 -2.9716 10 7 1.8905 2.8810 -3.4936 11 6 1.6782 2.5434 -4.9078 12 6 0.3053 3.0820 -5.3378 13 6 0.2323 4.5799 -5.0322 14 6 1.3565 5.3064 -5.7739 15 6 1.3001 6.8009 -5.4419 16 7 -0.0468 7.3027 -5.7471 17 6 -0.2188 8.3866 -6.5660 18 1 0.5579 8.6660 -7.2624 19 6 -1.3916 9.1264 -6.5010 20 7 -2.1918 9.0015 -5.4634 21 14 -1.8340 10.2993 -7.8859 22 1 -2.6377 9.5796 -8.9064 23 1 -2.6251 11.4321 -7.3415 24 1 -0.5911 10.8187 -8.5107 25 6 -1.2054 6.6192 -5.1562 26 6 -1.1213 5.1268 -5.4913 27 6 0.3876 4.8033 -3.5262 28 6 1.7558 4.2828 -3.0747 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.0622 4.3338 -1.1195 35 1 2.4597 3.0014 -5.5140 36 1 1.7030 1.4608 -5.0328 37 1 -0.4803 2.5605 -4.7911 38 1 0.1721 2.9222 -6.4077 39 1 2.3191 4.9008 -5.4627 40 1 1.2328 5.1675 -6.8479 41 1 2.0345 7.3367 -6.0433 42 1 1.5148 6.9506 -4.3840 43 1 -3.0111 9.5188 -5.4178 44 1 -2.1246 7.0352 -5.5686 45 1 -1.1977 6.7517 -4.0742 46 1 -1.2229 4.9896 -6.5678 47 1 -1.9219 4.5933 -4.9791 48 1 -0.3989 4.2664 -2.9958 49 1 0.3132 5.8685 -3.3069 50 1 1.8318 4.3487 -1.9893 51 1 2.5451 4.8786 -3.5330 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000957598594.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:50:57 Heat of formation + Delta-G solvation = 54.767390 kcal Electronic energy + Delta-G solvation = -32380.681698 eV Core-core repulsion = 28284.209810 eV Total energy + Delta-G solvation = -4096.471888 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -45.16215 -40.63531 -38.78275 -36.07525 -35.44337 -33.93321 -32.72817 -31.47629 -31.28879 -30.75804 -30.00435 -28.13263 -25.87052 -24.78391 -24.28045 -23.54582 -23.05486 -21.96620 -21.19044 -20.79355 -19.72385 -18.17424 -17.95552 -17.42950 -17.11044 -16.53023 -16.21212 -15.36279 -14.97186 -14.87692 -14.57671 -14.31668 -14.19483 -14.05002 -13.77993 -13.63159 -13.49019 -13.23528 -12.94135 -12.91437 -12.76631 -12.29348 -11.86283 -11.81811 -11.71823 -11.50299 -11.40460 -11.22070 -11.19268 -11.09963 -10.77110 -10.62629 -10.42955 -10.23772 -10.18004 -10.14261 -10.11043 -9.84389 -9.70016 -9.56637 -9.44614 -8.65050 -8.45658 -6.75422 -5.78833 -3.19610 0.86048 1.57499 2.48626 2.84747 3.03650 3.35486 3.42685 3.43408 3.75263 4.02624 4.37015 4.46550 4.63280 4.71930 4.90027 4.96363 4.98399 5.01844 5.05992 5.11607 5.21255 5.24304 5.33029 5.37100 5.38974 5.57776 5.59768 5.61857 5.67860 5.76439 5.82579 5.87398 5.94152 5.96592 6.03628 6.05614 6.17519 6.24743 6.34920 6.45266 6.50847 6.58790 6.67550 6.77888 6.85672 6.93139 7.21165 7.40404 7.69263 7.80241 7.92040 7.98039 8.42103 9.19106 9.83423 10.35535 11.26741 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019269 B = 0.002680 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.735396 B =10443.736743 C =10818.739480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.050 4.050 3 C 0.069 3.931 4 N -0.357 5.357 5 O 0.098 5.902 6 C -0.016 4.016 7 C -0.245 4.245 8 C 0.595 3.405 9 O -0.536 6.536 10 N -0.596 5.596 11 C 0.115 3.885 12 C -0.124 4.124 13 C -0.047 4.047 14 C -0.126 4.126 15 C 0.145 3.855 16 N -0.592 5.592 17 C -0.243 4.243 18 H 0.068 0.932 19 C -0.005 4.005 20 N -0.907 5.907 21 Si 0.904 3.096 22 H -0.289 1.289 23 H -0.292 1.292 24 H -0.280 1.280 25 C 0.160 3.840 26 C -0.130 4.130 27 C -0.124 4.124 28 C 0.084 3.916 29 H 0.067 0.933 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.100 0.900 33 H 0.083 0.917 34 H 0.235 0.765 35 H 0.073 0.927 36 H 0.089 0.911 37 H 0.062 0.938 38 H 0.074 0.926 39 H 0.050 0.950 40 H 0.059 0.941 41 H 0.049 0.951 42 H 0.018 0.982 43 H 0.253 0.747 44 H 0.104 0.896 45 H 0.016 0.984 46 H 0.054 0.946 47 H 0.046 0.954 48 H 0.060 0.940 49 H 0.093 0.907 50 H 0.086 0.914 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.010 -14.262 8.163 18.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.088 4.088 3 C -0.093 4.093 4 N -0.063 5.063 5 O 0.037 5.963 6 C -0.098 4.098 7 C -0.252 4.252 8 C 0.383 3.617 9 O -0.414 6.414 10 N -0.328 5.328 11 C -0.007 4.007 12 C -0.162 4.162 13 C -0.047 4.047 14 C -0.165 4.165 15 C 0.019 3.981 16 N -0.315 5.315 17 C -0.373 4.373 18 H 0.085 0.915 19 C -0.202 4.202 20 N -0.553 5.553 21 Si 0.734 3.266 22 H -0.216 1.216 23 H -0.218 1.218 24 H -0.206 1.206 25 C 0.035 3.965 26 C -0.169 4.169 27 C -0.162 4.162 28 C -0.038 4.038 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.118 0.882 33 H 0.102 0.898 34 H 0.250 0.750 35 H 0.092 0.908 36 H 0.107 0.893 37 H 0.081 0.919 38 H 0.092 0.908 39 H 0.069 0.931 40 H 0.078 0.922 41 H 0.068 0.932 42 H 0.035 0.965 43 H 0.063 0.937 44 H 0.122 0.878 45 H 0.034 0.966 46 H 0.073 0.927 47 H 0.064 0.936 48 H 0.079 0.921 49 H 0.111 0.889 50 H 0.104 0.896 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 7.912 -14.904 9.296 19.265 hybrid contribution -0.331 0.798 -1.597 1.815 sum 7.581 -14.106 7.699 17.768 Atomic orbital electron populations 1.21699 0.93616 1.02552 1.02373 1.20069 0.96626 0.87482 1.04630 1.24820 0.99518 0.98757 0.86235 1.73652 1.16433 0.92602 1.23603 1.84592 1.61949 1.26585 1.23141 1.26850 0.99351 0.99780 0.83816 1.22309 1.12188 0.95019 0.95713 1.16871 0.76970 0.84766 0.83116 1.90768 1.50884 1.19963 1.79754 1.47957 1.68092 1.07891 1.08868 1.21805 0.97817 1.01604 0.79471 1.22113 0.95987 0.96649 1.01464 1.20393 0.97421 0.92840 0.94040 1.22156 0.96228 0.98176 0.99945 1.20904 0.88784 0.91402 0.97039 1.44102 0.99417 1.32240 1.55762 1.19277 1.02511 1.03740 1.11740 0.91464 1.24901 0.99377 0.98543 0.97416 1.69965 1.14280 1.43496 1.27578 0.86255 0.78208 0.80272 0.81859 1.21583 1.21816 1.20586 1.21064 0.93647 0.86432 0.95385 1.22233 0.93956 1.00420 1.00270 1.22026 0.95023 1.02777 0.96369 1.22437 0.99918 0.80907 1.00528 0.91370 0.92449 0.92302 0.88165 0.89814 0.74967 0.90844 0.89313 0.91948 0.90788 0.93103 0.92247 0.93197 0.96456 0.93685 0.87812 0.96627 0.92704 0.93573 0.92136 0.88913 0.89608 0.90100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 9.89 37.16 0.37 -0.96 16 2 C -0.05 -0.51 6.50 -27.88 -0.18 -0.69 16 3 C 0.07 0.82 6.84 -79.77 -0.55 0.28 16 4 N -0.36 -4.33 12.01 34.78 0.42 -3.91 16 5 O 0.10 1.03 11.06 18.64 0.21 1.24 16 6 C -0.02 -0.15 10.10 30.41 0.31 0.16 16 7 C -0.25 -2.82 5.98 -102.89 -0.62 -3.44 16 8 C 0.60 7.74 7.67 -12.53 -0.10 7.64 16 9 O -0.54 -8.36 15.59 5.28 0.08 -8.28 16 10 N -0.60 -6.98 2.97 -173.78 -0.52 -7.49 16 11 C 0.11 1.34 5.98 -3.49 -0.02 1.32 16 12 C -0.12 -1.55 4.92 -26.39 -0.13 -1.67 16 13 C -0.05 -0.67 0.51 -154.43 -0.08 -0.75 16 14 C -0.13 -1.89 4.15 -26.62 -0.11 -2.00 16 15 C 0.15 2.69 6.04 -3.70 -0.02 2.67 16 16 N -0.59 -13.72 3.02 -172.32 -0.52 -14.24 16 17 C -0.24 -6.36 9.67 -15.06 -0.15 -6.50 16 18 H 0.07 1.73 7.84 -52.49 -0.41 1.32 16 19 C -0.01 -0.14 5.02 -17.43 -0.09 -0.23 16 20 N -0.91 -25.27 10.68 55.49 0.59 -24.67 16 21 Si 0.90 21.18 29.58 -169.99 -5.03 16.15 16 22 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 25 C 0.16 3.55 4.92 -3.72 -0.02 3.53 16 26 C -0.13 -2.29 4.90 -26.61 -0.13 -2.42 16 27 C -0.12 -1.65 4.15 -26.62 -0.11 -1.76 16 28 C 0.08 0.88 5.29 -3.71 -0.02 0.87 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.10 1.09 7.23 -51.93 -0.38 0.71 16 33 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.23 1.24 6.24 -52.48 -0.33 0.91 16 35 H 0.07 0.81 6.66 -51.93 -0.35 0.46 16 36 H 0.09 1.09 7.03 -51.92 -0.36 0.72 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.05 0.65 4.98 -51.93 -0.26 0.39 16 40 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.05 0.93 7.90 -51.93 -0.41 0.52 16 42 H 0.02 0.31 6.73 -51.94 -0.35 -0.04 16 43 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 44 H 0.10 2.69 5.50 -51.93 -0.29 2.40 16 45 H 0.02 0.36 6.67 -51.93 -0.35 0.01 16 46 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 47 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 49 H 0.09 1.42 4.99 -51.93 -0.26 1.16 16 50 H 0.09 0.75 3.38 -51.93 -0.18 0.57 16 51 H 0.08 0.79 6.74 -51.93 -0.35 0.44 16 LS Contribution 380.38 15.07 5.73 5.73 Total: -1.00 -30.57 380.38 -8.29 -38.86 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -7.62 Total: 0.57 kcal Atomic # 6 Polarization: -2.32 SS G_CDS: -1.64 Total: -3.96 kcal Atomic # 7 Polarization: -50.30 SS G_CDS: -0.03 Total: -50.32 kcal Atomic # 8 Polarization: -7.33 SS G_CDS: 0.29 Total: -7.04 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.03 Total: 16.15 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.57 -8.29 -38.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957598594.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.629 kcal (2) G-P(sol) polarization free energy of solvation -30.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds