Wall clock time and date at job start Wed Apr 1 2020 05:50:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.50702 * 109.47272 * 2 1
4 4 N 1.30014 * 127.33521 * 90.02393 * 3 2 1
5 5 O 1.20649 * 112.30234 * 179.97438 * 4 3 2
6 6 C 1.33497 * 113.15745 * 0.02562 * 5 4 3
7 7 C 1.37359 * 106.34178 * 0.02562 * 6 5 4
8 8 C 1.47394 * 128.56639 * 180.02562 * 7 6 5
9 9 O 1.21601 * 120.00423 * 147.97576 * 8 7 6
10 10 N 1.34782 * 119.99577 * 327.96966 * 8 7 6
11 11 C 1.46931 * 120.64162 * 184.13066 * 10 8 7
12 12 C 1.53616 * 108.53964 * 126.32494 * 11 10 8
13 13 C 1.53048 * 109.25937 * 54.87182 * 12 11 10
14 14 C 1.53025 * 109.44058 * 58.56872 * 13 12 11
15 15 C 1.53196 * 109.33345 * 181.23527 * 14 13 12
16 16 N 1.46934 * 108.77825 * 305.37352 * 15 14 13
17 17 C 1.36933 * 120.64077 * 233.61740 * 16 15 14
18 18 H 1.07994 * 120.00741 * 21.78680 * 17 16 15
19 19 C 1.38816 * 119.99856 * 201.78610 * 17 16 15
20 20 N 1.31626 * 120.00017 * 16.22797 * 19 17 16
21 21 Si 1.86806 * 120.00229 * 196.22140 * 19 17 16
22 22 H 1.48500 * 109.46869 * 90.00239 * 21 19 17
23 23 H 1.48498 * 109.47075 * 210.00374 * 21 19 17
24 24 H 1.48493 * 109.46838 * 330.00404 * 21 19 17
25 25 C 1.46921 * 118.71567 * 53.63716 * 16 15 14
26 26 C 1.53043 * 109.39090 * 178.60057 * 13 12 11
27 27 C 1.53032 * 109.54408 * 298.55848 * 13 12 11
28 28 C 1.46929 * 120.64583 * 4.41195 * 10 8 7
29 29 H 1.09001 * 109.47089 * 179.97438 * 1 2 3
30 30 H 1.09001 * 109.46837 * 299.99791 * 1 2 3
31 31 H 1.09004 * 109.46839 * 59.99751 * 1 2 3
32 32 H 1.09001 * 109.47542 * 239.99963 * 2 1 3
33 33 H 1.09004 * 109.47360 * 120.00174 * 2 1 3
34 34 H 1.08005 * 126.82896 * 179.97438 * 6 5 4
35 35 H 1.08998 * 109.58493 * 246.16355 * 11 10 8
36 36 H 1.09008 * 109.58505 * 6.58719 * 11 10 8
37 37 H 1.08997 * 109.63230 * 294.86833 * 12 11 10
38 38 H 1.09003 * 109.42448 * 174.74109 * 12 11 10
39 39 H 1.08996 * 109.49925 * 301.18815 * 14 13 12
40 40 H 1.08997 * 109.49647 * 61.28034 * 14 13 12
41 41 H 1.09000 * 109.58558 * 185.58966 * 15 14 13
42 42 H 1.08989 * 109.70318 * 65.23025 * 15 14 13
43 43 H 0.97001 * 119.99792 * 179.97438 * 20 19 17
44 44 H 1.09000 * 109.59163 * 186.56353 * 25 16 15
45 45 H 1.09004 * 109.70105 * 66.21517 * 25 16 15
46 46 H 1.08998 * 109.49618 * 298.68281 * 26 13 12
47 47 H 1.09000 * 109.49639 * 58.76959 * 26 13 12
48 48 H 1.09007 * 109.49344 * 301.34445 * 27 13 12
49 49 H 1.09004 * 109.49458 * 181.25983 * 27 13 12
50 50 H 1.08999 * 109.58741 * 353.40711 * 28 10 8
51 51 H 1.09001 * 109.58686 * 113.68634 * 28 10 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0324 1.4208 0.0000
4 7 2.2956 2.1641 1.0337
5 8 2.6844 3.2625 0.7208
6 6 2.7466 3.4406 -0.6008
7 6 2.3284 2.2624 -1.1696
8 6 2.2081 1.9241 -2.5992
9 8 2.3951 0.7817 -2.9716
10 7 1.8905 2.8810 -3.4936
11 6 1.6782 2.5434 -4.9078
12 6 0.3053 3.0820 -5.3378
13 6 0.2323 4.5799 -5.0322
14 6 1.3565 5.3064 -5.7739
15 6 1.3001 6.8009 -5.4419
16 7 -0.0468 7.3027 -5.7471
17 6 -0.2188 8.3866 -6.5660
18 1 0.5579 8.6660 -7.2624
19 6 -1.3916 9.1264 -6.5010
20 7 -2.1918 9.0015 -5.4634
21 14 -1.8340 10.2993 -7.8859
22 1 -2.6377 9.5796 -8.9064
23 1 -2.6251 11.4321 -7.3415
24 1 -0.5911 10.8187 -8.5107
25 6 -1.2054 6.6192 -5.1562
26 6 -1.1213 5.1268 -5.4913
27 6 0.3876 4.8033 -3.5262
28 6 1.7558 4.2828 -3.0747
29 1 -0.3633 -1.0277 -0.0005
30 1 -0.3633 0.5138 0.8900
31 1 -0.3633 0.5139 -0.8900
32 1 1.8934 -0.5138 -0.8900
33 1 1.8934 -0.5139 0.8900
34 1 3.0622 4.3338 -1.1195
35 1 2.4597 3.0014 -5.5140
36 1 1.7030 1.4608 -5.0328
37 1 -0.4803 2.5605 -4.7911
38 1 0.1721 2.9222 -6.4077
39 1 2.3191 4.9008 -5.4627
40 1 1.2328 5.1675 -6.8479
41 1 2.0345 7.3367 -6.0433
42 1 1.5148 6.9506 -4.3840
43 1 -3.0111 9.5188 -5.4178
44 1 -2.1246 7.0352 -5.5686
45 1 -1.1977 6.7517 -4.0742
46 1 -1.2229 4.9896 -6.5678
47 1 -1.9219 4.5933 -4.9791
48 1 -0.3989 4.2664 -2.9958
49 1 0.3132 5.8685 -3.3069
50 1 1.8318 4.3487 -1.9893
51 1 2.5451 4.8786 -3.5330
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000957598594.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:50:57
Heat of formation + Delta-G solvation = 54.767390 kcal
Electronic energy + Delta-G solvation = -32380.681698 eV
Core-core repulsion = 28284.209810 eV
Total energy + Delta-G solvation = -4096.471888 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.99 seconds
Orbital eigenvalues (eV)
-45.16215 -40.63531 -38.78275 -36.07525 -35.44337 -33.93321 -32.72817 -31.47629
-31.28879 -30.75804 -30.00435 -28.13263 -25.87052 -24.78391 -24.28045 -23.54582
-23.05486 -21.96620 -21.19044 -20.79355 -19.72385 -18.17424 -17.95552 -17.42950
-17.11044 -16.53023 -16.21212 -15.36279 -14.97186 -14.87692 -14.57671 -14.31668
-14.19483 -14.05002 -13.77993 -13.63159 -13.49019 -13.23528 -12.94135 -12.91437
-12.76631 -12.29348 -11.86283 -11.81811 -11.71823 -11.50299 -11.40460 -11.22070
-11.19268 -11.09963 -10.77110 -10.62629 -10.42955 -10.23772 -10.18004 -10.14261
-10.11043 -9.84389 -9.70016 -9.56637 -9.44614 -8.65050 -8.45658 -6.75422
-5.78833 -3.19610 0.86048 1.57499 2.48626 2.84747 3.03650 3.35486
3.42685 3.43408 3.75263 4.02624 4.37015 4.46550 4.63280 4.71930
4.90027 4.96363 4.98399 5.01844 5.05992 5.11607 5.21255 5.24304
5.33029 5.37100 5.38974 5.57776 5.59768 5.61857 5.67860 5.76439
5.82579 5.87398 5.94152 5.96592 6.03628 6.05614 6.17519 6.24743
6.34920 6.45266 6.50847 6.58790 6.67550 6.77888 6.85672 6.93139
7.21165 7.40404 7.69263 7.80241 7.92040 7.98039 8.42103 9.19106
9.83423 10.35535 11.26741
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.019269 B = 0.002680 C = 0.002587
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1452.735396 B =10443.736743 C =10818.739480
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C -0.050 4.050
3 C 0.069 3.931
4 N -0.357 5.357
5 O 0.098 5.902
6 C -0.016 4.016
7 C -0.245 4.245
8 C 0.595 3.405
9 O -0.536 6.536
10 N -0.596 5.596
11 C 0.115 3.885
12 C -0.124 4.124
13 C -0.047 4.047
14 C -0.126 4.126
15 C 0.145 3.855
16 N -0.592 5.592
17 C -0.243 4.243
18 H 0.068 0.932
19 C -0.005 4.005
20 N -0.907 5.907
21 Si 0.904 3.096
22 H -0.289 1.289
23 H -0.292 1.292
24 H -0.280 1.280
25 C 0.160 3.840
26 C -0.130 4.130
27 C -0.124 4.124
28 C 0.084 3.916
29 H 0.067 0.933
30 H 0.056 0.944
31 H 0.058 0.942
32 H 0.100 0.900
33 H 0.083 0.917
34 H 0.235 0.765
35 H 0.073 0.927
36 H 0.089 0.911
37 H 0.062 0.938
38 H 0.074 0.926
39 H 0.050 0.950
40 H 0.059 0.941
41 H 0.049 0.951
42 H 0.018 0.982
43 H 0.253 0.747
44 H 0.104 0.896
45 H 0.016 0.984
46 H 0.054 0.946
47 H 0.046 0.954
48 H 0.060 0.940
49 H 0.093 0.907
50 H 0.086 0.914
51 H 0.081 0.919
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.010 -14.262 8.163 18.281
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.202 4.202
2 C -0.088 4.088
3 C -0.093 4.093
4 N -0.063 5.063
5 O 0.037 5.963
6 C -0.098 4.098
7 C -0.252 4.252
8 C 0.383 3.617
9 O -0.414 6.414
10 N -0.328 5.328
11 C -0.007 4.007
12 C -0.162 4.162
13 C -0.047 4.047
14 C -0.165 4.165
15 C 0.019 3.981
16 N -0.315 5.315
17 C -0.373 4.373
18 H 0.085 0.915
19 C -0.202 4.202
20 N -0.553 5.553
21 Si 0.734 3.266
22 H -0.216 1.216
23 H -0.218 1.218
24 H -0.206 1.206
25 C 0.035 3.965
26 C -0.169 4.169
27 C -0.162 4.162
28 C -0.038 4.038
29 H 0.086 0.914
30 H 0.076 0.924
31 H 0.077 0.923
32 H 0.118 0.882
33 H 0.102 0.898
34 H 0.250 0.750
35 H 0.092 0.908
36 H 0.107 0.893
37 H 0.081 0.919
38 H 0.092 0.908
39 H 0.069 0.931
40 H 0.078 0.922
41 H 0.068 0.932
42 H 0.035 0.965
43 H 0.063 0.937
44 H 0.122 0.878
45 H 0.034 0.966
46 H 0.073 0.927
47 H 0.064 0.936
48 H 0.079 0.921
49 H 0.111 0.889
50 H 0.104 0.896
51 H 0.099 0.901
Dipole moment (debyes) X Y Z Total
from point charges 7.912 -14.904 9.296 19.265
hybrid contribution -0.331 0.798 -1.597 1.815
sum 7.581 -14.106 7.699 17.768
Atomic orbital electron populations
1.21699 0.93616 1.02552 1.02373 1.20069 0.96626 0.87482 1.04630
1.24820 0.99518 0.98757 0.86235 1.73652 1.16433 0.92602 1.23603
1.84592 1.61949 1.26585 1.23141 1.26850 0.99351 0.99780 0.83816
1.22309 1.12188 0.95019 0.95713 1.16871 0.76970 0.84766 0.83116
1.90768 1.50884 1.19963 1.79754 1.47957 1.68092 1.07891 1.08868
1.21805 0.97817 1.01604 0.79471 1.22113 0.95987 0.96649 1.01464
1.20393 0.97421 0.92840 0.94040 1.22156 0.96228 0.98176 0.99945
1.20904 0.88784 0.91402 0.97039 1.44102 0.99417 1.32240 1.55762
1.19277 1.02511 1.03740 1.11740 0.91464 1.24901 0.99377 0.98543
0.97416 1.69965 1.14280 1.43496 1.27578 0.86255 0.78208 0.80272
0.81859 1.21583 1.21816 1.20586 1.21064 0.93647 0.86432 0.95385
1.22233 0.93956 1.00420 1.00270 1.22026 0.95023 1.02777 0.96369
1.22437 0.99918 0.80907 1.00528 0.91370 0.92449 0.92302 0.88165
0.89814 0.74967 0.90844 0.89313 0.91948 0.90788 0.93103 0.92247
0.93197 0.96456 0.93685 0.87812 0.96627 0.92704 0.93573 0.92136
0.88913 0.89608 0.90100
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.33 9.89 37.16 0.37 -0.96 16
2 C -0.05 -0.51 6.50 -27.88 -0.18 -0.69 16
3 C 0.07 0.82 6.84 -79.77 -0.55 0.28 16
4 N -0.36 -4.33 12.01 34.78 0.42 -3.91 16
5 O 0.10 1.03 11.06 18.64 0.21 1.24 16
6 C -0.02 -0.15 10.10 30.41 0.31 0.16 16
7 C -0.25 -2.82 5.98 -102.89 -0.62 -3.44 16
8 C 0.60 7.74 7.67 -12.53 -0.10 7.64 16
9 O -0.54 -8.36 15.59 5.28 0.08 -8.28 16
10 N -0.60 -6.98 2.97 -173.78 -0.52 -7.49 16
11 C 0.11 1.34 5.98 -3.49 -0.02 1.32 16
12 C -0.12 -1.55 4.92 -26.39 -0.13 -1.67 16
13 C -0.05 -0.67 0.51 -154.43 -0.08 -0.75 16
14 C -0.13 -1.89 4.15 -26.62 -0.11 -2.00 16
15 C 0.15 2.69 6.04 -3.70 -0.02 2.67 16
16 N -0.59 -13.72 3.02 -172.32 -0.52 -14.24 16
17 C -0.24 -6.36 9.67 -15.06 -0.15 -6.50 16
18 H 0.07 1.73 7.84 -52.49 -0.41 1.32 16
19 C -0.01 -0.14 5.02 -17.43 -0.09 -0.23 16
20 N -0.91 -25.27 10.68 55.49 0.59 -24.67 16
21 Si 0.90 21.18 29.58 -169.99 -5.03 16.15 16
22 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16
23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16
24 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16
25 C 0.16 3.55 4.92 -3.72 -0.02 3.53 16
26 C -0.13 -2.29 4.90 -26.61 -0.13 -2.42 16
27 C -0.12 -1.65 4.15 -26.62 -0.11 -1.76 16
28 C 0.08 0.88 5.29 -3.71 -0.02 0.87 16
29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16
30 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16
31 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16
32 H 0.10 1.09 7.23 -51.93 -0.38 0.71 16
33 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16
34 H 0.23 1.24 6.24 -52.48 -0.33 0.91 16
35 H 0.07 0.81 6.66 -51.93 -0.35 0.46 16
36 H 0.09 1.09 7.03 -51.92 -0.36 0.72 16
37 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16
38 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16
39 H 0.05 0.65 4.98 -51.93 -0.26 0.39 16
40 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16
41 H 0.05 0.93 7.90 -51.93 -0.41 0.52 16
42 H 0.02 0.31 6.73 -51.94 -0.35 -0.04 16
43 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16
44 H 0.10 2.69 5.50 -51.93 -0.29 2.40 16
45 H 0.02 0.36 6.67 -51.93 -0.35 0.01 16
46 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16
47 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16
48 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16
49 H 0.09 1.42 4.99 -51.93 -0.26 1.16 16
50 H 0.09 0.75 3.38 -51.93 -0.18 0.57 16
51 H 0.08 0.79 6.74 -51.93 -0.35 0.44 16
LS Contribution 380.38 15.07 5.73 5.73
Total: -1.00 -30.57 380.38 -8.29 -38.86
By element:
Atomic # 1 Polarization: 8.20 SS G_CDS: -7.62 Total: 0.57 kcal
Atomic # 6 Polarization: -2.32 SS G_CDS: -1.64 Total: -3.96 kcal
Atomic # 7 Polarization: -50.30 SS G_CDS: -0.03 Total: -50.32 kcal
Atomic # 8 Polarization: -7.33 SS G_CDS: 0.29 Total: -7.04 kcal
Atomic # 14 Polarization: 21.18 SS G_CDS: -5.03 Total: 16.15 kcal
Total LS contribution 5.73 Total: 5.73 kcal
Total: -30.57 -8.29 -38.86 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000957598594.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 93.629 kcal
(2) G-P(sol) polarization free energy of solvation -30.568 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.061 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.294 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.862 kcal
(6) G-S(sol) free energy of system = (1) + (5) 54.767 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.00 seconds