Wall clock time and date at job start Wed Apr 1 2020 05:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50702 * 109.47272 * 2 1 4 4 N 1.30014 * 127.33521 * 90.02393 * 3 2 1 5 5 O 1.20649 * 112.30234 * 179.97438 * 4 3 2 6 6 C 1.33497 * 113.15745 * 0.02562 * 5 4 3 7 7 C 1.37359 * 106.34178 * 0.02562 * 6 5 4 8 8 C 1.47394 * 128.56639 * 180.02562 * 7 6 5 9 9 O 1.21601 * 120.00423 * 147.97576 * 8 7 6 10 10 N 1.34782 * 119.99577 * 327.96966 * 8 7 6 11 11 C 1.46931 * 120.64162 * 184.13066 * 10 8 7 12 12 C 1.53616 * 108.53964 * 126.32494 * 11 10 8 13 13 C 1.53048 * 109.25937 * 54.87182 * 12 11 10 14 14 C 1.53025 * 109.44058 * 58.56872 * 13 12 11 15 15 C 1.53196 * 109.33345 * 181.23527 * 14 13 12 16 16 N 1.46934 * 108.77825 * 305.37352 * 15 14 13 17 17 C 1.36933 * 120.64077 * 233.61740 * 16 15 14 18 18 H 1.07994 * 120.00741 * 21.78680 * 17 16 15 19 19 C 1.38816 * 119.99856 * 201.78610 * 17 16 15 20 20 N 1.31626 * 120.00017 * 16.22797 * 19 17 16 21 21 Si 1.86806 * 120.00229 * 196.22140 * 19 17 16 22 22 H 1.48500 * 109.46869 * 90.00239 * 21 19 17 23 23 H 1.48498 * 109.47075 * 210.00374 * 21 19 17 24 24 H 1.48493 * 109.46838 * 330.00404 * 21 19 17 25 25 C 1.46921 * 118.71567 * 53.63716 * 16 15 14 26 26 C 1.53043 * 109.39090 * 178.60057 * 13 12 11 27 27 C 1.53032 * 109.54408 * 298.55848 * 13 12 11 28 28 C 1.46929 * 120.64583 * 4.41195 * 10 8 7 29 29 H 1.09001 * 109.47089 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46837 * 299.99791 * 1 2 3 31 31 H 1.09004 * 109.46839 * 59.99751 * 1 2 3 32 32 H 1.09001 * 109.47542 * 239.99963 * 2 1 3 33 33 H 1.09004 * 109.47360 * 120.00174 * 2 1 3 34 34 H 1.08005 * 126.82896 * 179.97438 * 6 5 4 35 35 H 1.08998 * 109.58493 * 246.16355 * 11 10 8 36 36 H 1.09008 * 109.58505 * 6.58719 * 11 10 8 37 37 H 1.08997 * 109.63230 * 294.86833 * 12 11 10 38 38 H 1.09003 * 109.42448 * 174.74109 * 12 11 10 39 39 H 1.08996 * 109.49925 * 301.18815 * 14 13 12 40 40 H 1.08997 * 109.49647 * 61.28034 * 14 13 12 41 41 H 1.09000 * 109.58558 * 185.58966 * 15 14 13 42 42 H 1.08989 * 109.70318 * 65.23025 * 15 14 13 43 43 H 0.97001 * 119.99792 * 179.97438 * 20 19 17 44 44 H 1.09000 * 109.59163 * 186.56353 * 25 16 15 45 45 H 1.09004 * 109.70105 * 66.21517 * 25 16 15 46 46 H 1.08998 * 109.49618 * 298.68281 * 26 13 12 47 47 H 1.09000 * 109.49639 * 58.76959 * 26 13 12 48 48 H 1.09007 * 109.49344 * 301.34445 * 27 13 12 49 49 H 1.09004 * 109.49458 * 181.25983 * 27 13 12 50 50 H 1.08999 * 109.58741 * 353.40711 * 28 10 8 51 51 H 1.09001 * 109.58686 * 113.68634 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2956 2.1641 1.0337 5 8 2.6844 3.2625 0.7208 6 6 2.7466 3.4406 -0.6008 7 6 2.3284 2.2624 -1.1696 8 6 2.2081 1.9241 -2.5992 9 8 2.3951 0.7817 -2.9716 10 7 1.8905 2.8810 -3.4936 11 6 1.6782 2.5434 -4.9078 12 6 0.3053 3.0820 -5.3378 13 6 0.2323 4.5799 -5.0322 14 6 1.3565 5.3064 -5.7739 15 6 1.3001 6.8009 -5.4419 16 7 -0.0468 7.3027 -5.7471 17 6 -0.2188 8.3866 -6.5660 18 1 0.5579 8.6660 -7.2624 19 6 -1.3916 9.1264 -6.5010 20 7 -2.1918 9.0015 -5.4634 21 14 -1.8340 10.2993 -7.8859 22 1 -2.6377 9.5796 -8.9064 23 1 -2.6251 11.4321 -7.3415 24 1 -0.5911 10.8187 -8.5107 25 6 -1.2054 6.6192 -5.1562 26 6 -1.1213 5.1268 -5.4913 27 6 0.3876 4.8033 -3.5262 28 6 1.7558 4.2828 -3.0747 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.0622 4.3338 -1.1195 35 1 2.4597 3.0014 -5.5140 36 1 1.7030 1.4608 -5.0328 37 1 -0.4803 2.5605 -4.7911 38 1 0.1721 2.9222 -6.4077 39 1 2.3191 4.9008 -5.4627 40 1 1.2328 5.1675 -6.8479 41 1 2.0345 7.3367 -6.0433 42 1 1.5148 6.9506 -4.3840 43 1 -3.0111 9.5188 -5.4178 44 1 -2.1246 7.0352 -5.5686 45 1 -1.1977 6.7517 -4.0742 46 1 -1.2229 4.9896 -6.5678 47 1 -1.9219 4.5933 -4.9791 48 1 -0.3989 4.2664 -2.9958 49 1 0.3132 5.8685 -3.3069 50 1 1.8318 4.3487 -1.9893 51 1 2.5451 4.8786 -3.5330 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957598594.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:50:56 Heat of formation + Delta-G solvation = 38.002514 kcal Electronic energy + Delta-G solvation = -32381.408677 eV Core-core repulsion = 28284.209810 eV Total energy + Delta-G solvation = -4097.198867 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -46.00232 -41.70517 -39.97256 -37.41685 -36.27299 -35.30238 -33.82911 -32.81774 -32.28247 -31.79204 -31.51710 -29.52476 -27.15660 -25.91541 -25.36723 -24.51847 -24.31874 -23.40786 -22.16028 -21.90393 -20.89209 -19.40174 -18.85956 -18.66098 -18.14381 -17.77974 -17.21980 -16.81425 -16.30571 -15.88077 -15.75793 -15.44185 -15.31700 -15.22887 -15.03897 -14.85648 -14.67008 -14.49678 -14.30131 -14.03233 -13.68333 -13.33377 -13.12772 -13.00246 -12.87682 -12.77298 -12.67416 -12.56665 -12.50545 -12.23853 -12.13906 -12.00656 -11.97927 -11.70034 -11.64597 -11.21788 -11.16523 -11.09378 -11.01080 -10.88373 -10.63810 -10.39642 -9.65433 -8.63506 -7.78713 -5.20584 0.07500 0.71479 1.47821 1.50063 1.57359 1.60268 1.97013 2.22472 2.54551 2.93410 3.25165 3.32143 3.51898 3.73414 3.79222 3.81690 3.85896 3.92954 4.12188 4.16978 4.21784 4.26292 4.30175 4.37299 4.43665 4.50770 4.55805 4.62240 4.74744 4.77782 4.81758 4.82619 4.85215 4.89912 4.91061 5.04346 5.05388 5.08866 5.11164 5.19720 5.21505 5.33348 5.39435 5.44660 5.53223 5.58782 5.65163 5.75359 5.95360 6.27032 6.45806 6.98440 7.16778 7.21441 7.96969 8.42427 9.23761 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019269 B = 0.002680 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.735396 B =10443.736743 C =10818.739480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.050 4.050 3 C 0.058 3.942 4 N -0.375 5.375 5 O 0.097 5.903 6 C 0.011 3.989 7 C -0.272 4.272 8 C 0.597 3.403 9 O -0.567 6.567 10 N -0.592 5.592 11 C 0.118 3.882 12 C -0.114 4.114 13 C -0.042 4.042 14 C -0.113 4.113 15 C 0.140 3.860 16 N -0.610 5.610 17 C -0.248 4.248 18 H 0.068 0.932 19 C -0.058 4.058 20 N -0.935 5.935 21 Si 0.961 3.039 22 H -0.290 1.290 23 H -0.298 1.298 24 H -0.270 1.270 25 C 0.169 3.831 26 C -0.119 4.119 27 C -0.119 4.119 28 C 0.089 3.911 29 H 0.085 0.915 30 H 0.056 0.944 31 H 0.043 0.957 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.272 0.728 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.058 0.942 38 H 0.080 0.920 39 H 0.085 0.915 40 H 0.049 0.951 41 H 0.047 0.953 42 H 0.030 0.970 43 H 0.246 0.754 44 H 0.063 0.937 45 H 0.002 0.998 46 H 0.043 0.957 47 H 0.053 0.947 48 H 0.055 0.945 49 H 0.073 0.927 50 H 0.106 0.894 51 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.830 -14.875 8.269 19.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.088 4.088 3 C -0.105 4.105 4 N -0.082 5.082 5 O 0.038 5.962 6 C -0.071 4.071 7 C -0.279 4.279 8 C 0.386 3.614 9 O -0.448 6.448 10 N -0.324 5.324 11 C -0.004 4.004 12 C -0.153 4.153 13 C -0.042 4.042 14 C -0.151 4.151 15 C 0.015 3.985 16 N -0.334 5.334 17 C -0.379 4.379 18 H 0.086 0.914 19 C -0.252 4.252 20 N -0.583 5.583 21 Si 0.790 3.210 22 H -0.218 1.218 23 H -0.225 1.225 24 H -0.195 1.195 25 C 0.043 3.957 26 C -0.158 4.158 27 C -0.157 4.157 28 C -0.032 4.032 29 H 0.103 0.897 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.109 0.891 33 H 0.114 0.886 34 H 0.287 0.713 35 H 0.107 0.893 36 H 0.103 0.897 37 H 0.076 0.924 38 H 0.099 0.901 39 H 0.103 0.897 40 H 0.068 0.932 41 H 0.065 0.935 42 H 0.048 0.952 43 H 0.056 0.944 44 H 0.081 0.919 45 H 0.020 0.980 46 H 0.061 0.939 47 H 0.072 0.928 48 H 0.074 0.926 49 H 0.092 0.908 50 H 0.124 0.876 51 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 9.760 -15.519 9.401 20.603 hybrid contribution -0.885 1.009 -1.611 2.097 sum 8.875 -14.510 7.790 18.708 Atomic orbital electron populations 1.21660 0.93032 1.03461 1.01536 1.20105 0.97079 0.86962 1.04685 1.25132 0.99433 0.99421 0.86468 1.73656 1.17343 0.93187 1.24043 1.84574 1.61617 1.26075 1.23899 1.27465 0.96723 0.99864 0.83006 1.22266 1.14378 0.96230 0.95039 1.17000 0.76378 0.84371 0.83633 1.90752 1.52437 1.21241 1.80319 1.47974 1.67531 1.08114 1.08754 1.21793 0.97430 1.01515 0.79646 1.21991 0.96648 0.94695 1.01917 1.20320 0.95047 0.94013 0.94801 1.22016 0.98037 0.95607 0.99481 1.21112 0.86240 0.93477 0.97659 1.44346 1.01484 1.31882 1.55658 1.19588 1.02339 1.04052 1.11873 0.91420 1.25565 0.99762 1.00585 0.99330 1.70137 1.14450 1.44586 1.29161 0.85343 0.77943 0.78284 0.79387 1.21775 1.22499 1.19492 1.20792 0.91922 0.88901 0.94066 1.22048 0.96696 0.97423 0.99649 1.21912 0.96852 1.01600 0.95353 1.22503 0.98516 0.80232 1.01992 0.89654 0.92531 0.93733 0.89130 0.88646 0.71268 0.89316 0.89735 0.92365 0.90139 0.89679 0.93168 0.93453 0.95211 0.94433 0.91932 0.98008 0.93857 0.92803 0.92608 0.90850 0.87608 0.88185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 9.89 71.98 0.71 -1.73 16 2 C -0.05 -0.98 6.50 29.85 0.19 -0.78 16 3 C 0.06 1.30 6.84 45.16 0.31 1.61 16 4 N -0.38 -8.54 12.01 -44.79 -0.54 -9.08 16 5 O 0.10 1.83 11.06 76.96 0.85 2.68 16 6 C 0.01 0.16 10.10 67.61 0.68 0.84 16 7 C -0.27 -5.68 5.98 -18.75 -0.11 -5.79 16 8 C 0.60 14.25 7.67 86.65 0.66 14.92 16 9 O -0.57 -16.99 15.59 -4.03 -0.06 -17.05 16 10 N -0.59 -12.06 2.97 -821.97 -2.44 -14.50 16 11 C 0.12 2.39 5.98 86.50 0.52 2.91 16 12 C -0.11 -2.57 4.92 30.82 0.15 -2.42 16 13 C -0.04 -1.11 0.51 -52.13 -0.03 -1.14 16 14 C -0.11 -3.06 4.15 30.67 0.13 -2.94 16 15 C 0.14 4.94 6.04 86.36 0.52 5.46 16 16 N -0.61 -28.26 3.02 -699.10 -2.11 -30.37 16 17 C -0.25 -13.04 9.67 84.04 0.81 -12.23 16 18 H 0.07 3.47 7.84 -2.91 -0.02 3.45 16 19 C -0.06 -3.16 5.02 84.86 0.43 -2.74 16 20 N -0.94 -53.66 10.68 21.65 0.23 -53.42 16 21 Si 0.96 44.12 29.58 68.60 2.03 46.15 16 22 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 23 H -0.30 -13.88 7.11 99.48 0.71 -13.18 16 24 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 25 C 0.17 7.62 4.92 86.36 0.42 8.05 16 26 C -0.12 -4.16 4.90 30.67 0.15 -4.01 16 27 C -0.12 -2.90 4.15 30.67 0.13 -2.77 16 28 C 0.09 1.54 5.29 86.36 0.46 2.00 16 29 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.09 1.94 7.23 -2.39 -0.02 1.92 16 33 H 0.10 1.58 8.14 -2.38 -0.02 1.56 16 34 H 0.27 1.55 6.24 -2.91 -0.02 1.54 16 35 H 0.09 1.57 6.66 -2.39 -0.02 1.56 16 36 H 0.08 1.87 7.03 -2.38 -0.02 1.86 16 37 H 0.06 1.38 8.14 -2.39 -0.02 1.37 16 38 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.08 1.77 4.98 -2.39 -0.01 1.76 16 40 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.05 1.68 7.90 -2.39 -0.02 1.66 16 42 H 0.03 0.99 6.73 -2.39 -0.02 0.98 16 43 H 0.25 13.85 8.31 -92.71 -0.77 13.07 16 44 H 0.06 3.37 5.50 -2.39 -0.01 3.36 16 45 H 0.00 0.09 6.67 -2.38 -0.02 0.07 16 46 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 47 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 48 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 49 H 0.07 2.13 4.99 -2.39 -0.01 2.11 16 50 H 0.11 1.41 3.38 -2.39 -0.01 1.40 16 51 H 0.10 1.44 6.74 -2.39 -0.02 1.42 16 Total: -1.00 -68.24 380.38 5.05 -63.18 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: 0.95 Total: 13.16 kcal Atomic # 6 Polarization: -6.90 SS G_CDS: 6.14 Total: -0.76 kcal Atomic # 7 Polarization: -102.51 SS G_CDS: -4.86 Total: -107.37 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: 0.79 Total: -14.37 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -68.24 5.05 -63.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957598594.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.186 kcal (2) G-P(sol) polarization free energy of solvation -68.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds