Wall clock time and date at job start Wed Apr 1 2020 06:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50703 * 109.46787 * 2 1 4 4 N 1.33694 * 126.27550 * 270.13406 * 3 2 1 5 5 C 1.30619 * 108.99168 * 180.26020 * 4 3 2 6 6 O 1.33654 * 109.15818 * 359.76590 * 5 4 3 7 7 C 1.35348 * 107.68833 * 0.02562 * 6 5 4 8 8 C 1.46718 * 126.64650 * 179.97438 * 7 6 5 9 9 O 1.21685 * 119.99715 * 187.97939 * 8 7 6 10 10 N 1.34776 * 120.00248 * 7.97488 * 8 7 6 11 11 C 1.46939 * 120.64068 * 355.96685 * 10 8 7 12 12 C 1.53620 * 108.53488 * 126.32800 * 11 10 8 13 13 C 1.53049 * 109.26290 * 54.86831 * 12 11 10 14 14 C 1.53031 * 109.43932 * 58.57064 * 13 12 11 15 15 C 1.53188 * 109.33245 * 181.23249 * 14 13 12 16 16 N 1.46932 * 108.78166 * 305.37261 * 15 14 13 17 17 C 1.36937 * 120.64453 * 233.61619 * 16 15 14 18 18 H 1.08008 * 119.99498 * 36.50366 * 17 16 15 19 19 C 1.38806 * 120.00119 * 216.50245 * 17 16 15 20 20 N 1.31620 * 120.00046 * 359.21837 * 19 17 16 21 21 Si 1.86801 * 119.99947 * 179.21511 * 19 17 16 22 22 H 1.48501 * 109.46972 * 90.00365 * 21 19 17 23 23 H 1.48505 * 109.47077 * 209.99867 * 21 19 17 24 24 H 1.48493 * 109.47064 * 329.99978 * 21 19 17 25 25 C 1.46925 * 118.71320 * 53.63835 * 16 15 14 26 26 C 1.53046 * 109.39156 * 178.59996 * 13 12 11 27 27 C 1.53032 * 109.54456 * 298.56139 * 13 12 11 28 28 C 1.46933 * 120.64628 * 176.25289 * 10 8 7 29 29 H 1.08999 * 109.46939 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47376 * 299.99880 * 1 2 3 31 31 H 1.09005 * 109.47146 * 59.99788 * 1 2 3 32 32 H 1.08994 * 109.47549 * 240.00303 * 2 1 3 33 33 H 1.09001 * 109.46708 * 119.99622 * 2 1 3 34 34 H 1.08008 * 125.41758 * 179.78697 * 5 4 3 35 35 H 1.09000 * 109.58358 * 246.16109 * 11 10 8 36 36 H 1.09000 * 109.58777 * 6.58494 * 11 10 8 37 37 H 1.08998 * 109.62993 * 294.86468 * 12 11 10 38 38 H 1.09005 * 109.42298 * 174.74108 * 12 11 10 39 39 H 1.08998 * 109.49431 * 301.19158 * 14 13 12 40 40 H 1.09000 * 109.48921 * 61.27584 * 14 13 12 41 41 H 1.09001 * 109.58182 * 185.58994 * 15 14 13 42 42 H 1.09002 * 109.70281 * 65.23721 * 15 14 13 43 43 H 0.96996 * 120.00130 * 180.02562 * 20 19 17 44 44 H 1.08997 * 109.58581 * 186.56562 * 25 16 15 45 45 H 1.09007 * 109.70189 * 66.21617 * 25 16 15 46 46 H 1.09000 * 109.48909 * 298.68872 * 26 13 12 47 47 H 1.09002 * 109.49490 * 58.77040 * 26 13 12 48 48 H 1.08999 * 109.49336 * 301.33595 * 27 13 12 49 49 H 1.08994 * 109.49043 * 181.25876 * 27 13 12 50 50 H 1.09001 * 109.58197 * 353.40004 * 28 10 8 51 51 H 1.09000 * 109.58819 * 113.68608 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2935 2.1675 -1.0778 5 6 2.7153 3.3412 -0.6898 6 8 2.7315 3.3819 0.6461 7 6 2.3016 2.1812 1.0993 8 6 2.1582 1.7748 2.5017 9 8 1.8992 0.6180 2.7765 10 7 2.3134 2.6826 3.4857 11 6 2.7127 4.0622 3.1756 12 6 1.6932 5.0201 3.8104 13 6 1.5823 4.7200 5.3071 14 6 2.9564 4.8790 5.9616 15 6 2.8489 4.5482 7.4534 16 7 1.7969 5.3836 8.0486 17 6 2.0578 6.1560 9.1488 18 1 3.0191 6.6370 9.2553 19 6 1.0871 6.3209 10.1272 20 7 -0.0896 5.7474 9.9900 21 14 1.4508 7.3567 11.6386 22 1 1.0706 8.7677 11.3748 23 1 0.6699 6.8410 12.7917 24 1 2.9007 7.2847 11.9508 25 6 0.4593 5.3738 7.4407 26 6 0.5932 5.6956 5.9491 27 6 1.0856 3.2863 5.5063 28 6 2.0926 2.3103 4.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8934 -0.5137 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.0046 4.1502 -1.3443 35 1 3.7043 4.2562 3.5844 36 1 2.7264 4.2046 2.0950 37 1 0.7199 4.8839 3.3389 38 1 2.0254 6.0486 3.6693 39 1 3.6655 4.1997 5.4885 40 1 3.3001 5.9063 5.8406 41 1 3.8005 4.7552 7.9430 42 1 2.5947 3.4957 7.5791 43 1 -0.7681 5.8629 10.6734 44 1 -0.1663 6.1255 7.9220 45 1 0.0073 4.3895 7.5631 46 1 0.9582 6.7156 5.8283 47 1 -0.3795 5.5974 5.4670 48 1 0.1176 3.1658 5.0199 49 1 0.9857 3.0808 6.5720 50 1 1.6967 1.2960 4.9410 51 1 3.0355 2.3624 5.4343 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000957601272.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:02:25 Heat of formation + Delta-G solvation = 14.176757 kcal Electronic energy + Delta-G solvation = -32299.028473 eV Core-core repulsion = 28200.796443 eV Total energy + Delta-G solvation = -4098.232030 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.78997 -40.49092 -38.77159 -36.45347 -35.58402 -33.59232 -33.23164 -31.39929 -31.15304 -30.14837 -29.67275 -27.97724 -25.41920 -24.74026 -23.91097 -23.30179 -23.12696 -21.91859 -21.55601 -20.70388 -19.84261 -18.03396 -17.46328 -17.28726 -16.95982 -16.45669 -16.12585 -15.28350 -15.11036 -14.85588 -14.53146 -14.39764 -14.08245 -14.02365 -13.73349 -13.64399 -13.53864 -13.22319 -12.95327 -12.89717 -12.70396 -12.25787 -11.75251 -11.64535 -11.44248 -11.38628 -11.38108 -11.29596 -11.20562 -11.00669 -10.91514 -10.82301 -10.52168 -10.42345 -10.22230 -10.13226 -10.00681 -9.69547 -9.50974 -9.42611 -9.25604 -8.59395 -8.44414 -6.51099 -5.79533 -3.32936 0.56792 2.12319 2.15134 2.84027 2.95997 3.35146 3.42232 3.43485 3.71360 4.27228 4.40635 4.46854 4.76384 4.96094 4.97296 5.04045 5.10836 5.18399 5.19798 5.24637 5.32348 5.34306 5.42529 5.43656 5.59409 5.71618 5.74104 5.75937 5.81179 5.91996 5.93198 5.98859 6.00775 6.06138 6.08771 6.13173 6.20944 6.33617 6.37550 6.52203 6.56063 6.67338 6.70532 6.84877 6.92506 7.00744 7.11686 7.31344 7.43079 7.76629 7.79423 7.85527 8.52431 9.24788 9.83638 10.44577 11.27259 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.026524 B = 0.002465 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.378166 B =11354.417874 C =11715.786016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.054 4.054 3 C 0.080 3.920 4 N -0.491 5.491 5 C 0.189 3.811 6 O -0.183 6.183 7 C -0.105 4.105 8 C 0.603 3.397 9 O -0.519 6.519 10 N -0.592 5.592 11 C 0.090 3.910 12 C -0.122 4.122 13 C -0.047 4.047 14 C -0.125 4.125 15 C 0.145 3.855 16 N -0.591 5.591 17 C -0.254 4.254 18 H 0.061 0.939 19 C 0.010 3.990 20 N -0.904 5.904 21 Si 0.902 3.098 22 H -0.288 1.288 23 H -0.290 1.290 24 H -0.279 1.279 25 C 0.171 3.829 26 C -0.131 4.131 27 C -0.124 4.124 28 C 0.112 3.888 29 H 0.065 0.935 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.081 0.919 33 H 0.102 0.898 34 H 0.254 0.746 35 H 0.076 0.924 36 H 0.102 0.898 37 H 0.061 0.939 38 H 0.073 0.927 39 H 0.049 0.951 40 H 0.057 0.943 41 H 0.050 0.950 42 H 0.019 0.981 43 H 0.254 0.746 44 H 0.089 0.911 45 H 0.018 0.982 46 H 0.053 0.947 47 H 0.045 0.955 48 H 0.059 0.941 49 H 0.094 0.906 50 H 0.090 0.910 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.387 -5.505 -20.922 22.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.092 4.092 3 C -0.044 4.044 4 N -0.220 5.220 5 C -0.036 4.036 6 O -0.070 6.070 7 C -0.160 4.160 8 C 0.390 3.610 9 O -0.398 6.398 10 N -0.324 5.324 11 C -0.032 4.032 12 C -0.160 4.160 13 C -0.047 4.047 14 C -0.165 4.165 15 C 0.019 3.981 16 N -0.314 5.314 17 C -0.384 4.384 18 H 0.079 0.921 19 C -0.189 4.189 20 N -0.548 5.548 21 Si 0.732 3.268 22 H -0.215 1.215 23 H -0.216 1.216 24 H -0.204 1.204 25 C 0.045 3.955 26 C -0.170 4.170 27 C -0.162 4.162 28 C -0.009 4.009 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.099 0.901 33 H 0.121 0.879 34 H 0.269 0.731 35 H 0.095 0.905 36 H 0.119 0.881 37 H 0.080 0.920 38 H 0.092 0.908 39 H 0.068 0.932 40 H 0.076 0.924 41 H 0.068 0.932 42 H 0.036 0.964 43 H 0.064 0.936 44 H 0.107 0.893 45 H 0.036 0.964 46 H 0.072 0.928 47 H 0.064 0.936 48 H 0.078 0.922 49 H 0.112 0.888 50 H 0.109 0.891 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.061 -6.228 -21.191 22.457 hybrid contribution 0.280 1.192 1.262 1.758 sum 4.341 -5.036 -19.929 21.008 Atomic orbital electron populations 1.21646 0.93813 1.02333 1.01998 1.20195 0.96634 0.87808 1.04540 1.22053 0.97859 0.98129 0.86335 1.70349 1.16874 1.03278 1.31456 1.28464 0.97113 0.97586 0.80425 1.84679 1.65020 1.33682 1.23602 1.23029 1.11704 0.84951 0.96294 1.16495 0.77918 0.85250 0.81327 1.90837 1.50161 1.17320 1.81482 1.48065 1.66267 1.10902 1.07117 1.22478 0.98852 0.80197 1.01682 1.22092 0.98672 0.98656 0.96603 1.20400 0.96795 0.94918 0.92611 1.22152 0.94983 1.00737 0.98583 1.20938 0.92999 0.93617 0.90577 1.43935 1.06900 1.49067 1.31544 1.19120 1.00364 1.22832 0.96076 0.92141 1.25328 0.97047 0.99110 0.97450 1.69913 1.04401 1.46082 1.34379 0.86307 0.77804 0.79664 0.83057 1.21456 1.21585 1.20422 1.20849 0.87690 0.99947 0.86985 1.22262 0.96516 0.97847 1.00370 1.22046 0.97558 0.94126 1.02468 1.21836 1.00344 1.00014 0.78663 0.91610 0.92444 0.92724 0.90085 0.87946 0.73068 0.90550 0.88119 0.92023 0.90835 0.93206 0.92415 0.93191 0.96353 0.93568 0.89269 0.96351 0.92802 0.93649 0.92217 0.88822 0.89129 0.90590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.89 37.16 0.37 -1.00 16 2 C -0.05 -0.57 6.01 -27.88 -0.17 -0.74 16 3 C 0.08 0.94 6.41 -82.46 -0.53 0.41 16 4 N -0.49 -5.27 11.26 -10.88 -0.12 -5.39 16 5 C 0.19 1.46 13.21 52.25 0.69 2.15 16 6 O -0.18 -1.80 7.28 4.44 0.03 -1.76 16 7 C -0.11 -1.28 6.88 -36.84 -0.25 -1.53 16 8 C 0.60 8.30 7.66 -12.84 -0.10 8.20 16 9 O -0.52 -8.11 14.20 5.20 0.07 -8.03 16 10 N -0.59 -7.69 2.97 -174.02 -0.52 -8.20 16 11 C 0.09 1.02 5.88 -3.48 -0.02 1.00 16 12 C -0.12 -1.52 4.92 -26.38 -0.13 -1.65 16 13 C -0.05 -0.71 0.51 -154.43 -0.08 -0.79 16 14 C -0.13 -2.00 4.15 -26.62 -0.11 -2.11 16 15 C 0.15 2.87 6.04 -3.71 -0.02 2.85 16 16 N -0.59 -14.20 2.98 -172.32 -0.51 -14.72 16 17 C -0.25 -6.80 9.54 -15.06 -0.14 -6.95 16 18 H 0.06 1.61 7.83 -52.48 -0.41 1.19 16 19 C 0.01 0.26 5.26 -17.43 -0.09 0.17 16 20 N -0.90 -25.64 10.84 55.49 0.60 -25.03 16 21 Si 0.90 21.36 29.55 -169.99 -5.02 16.33 16 22 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 25 C 0.17 3.90 4.75 -3.72 -0.02 3.88 16 26 C -0.13 -2.36 4.90 -26.61 -0.13 -2.49 16 27 C -0.12 -1.87 4.15 -26.62 -0.11 -1.98 16 28 C 0.11 1.54 5.95 -3.71 -0.02 1.51 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.10 1.18 6.34 -51.93 -0.33 0.85 16 34 H 0.25 0.57 8.06 -52.48 -0.42 0.15 16 35 H 0.08 0.84 6.66 -51.93 -0.35 0.49 16 36 H 0.10 1.04 3.81 -54.94 -0.21 0.83 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.05 0.69 4.98 -51.93 -0.26 0.44 16 40 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.05 1.00 7.93 -51.93 -0.41 0.58 16 42 H 0.02 0.37 6.74 -51.93 -0.35 0.02 16 43 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 44 H 0.09 2.34 6.13 -51.93 -0.32 2.03 16 45 H 0.02 0.44 6.67 -51.93 -0.35 0.09 16 46 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 47 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 48 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 49 H 0.09 1.63 4.99 -51.93 -0.26 1.37 16 50 H 0.09 1.28 7.03 -51.93 -0.36 0.91 16 51 H 0.08 1.01 6.74 -51.93 -0.35 0.66 16 LS Contribution 380.13 15.07 5.73 5.73 Total: -1.00 -31.03 380.13 -8.35 -39.37 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -7.74 Total: 0.77 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: -0.87 Total: 0.94 kcal Atomic # 7 Polarization: -52.80 SS G_CDS: -0.55 Total: -53.35 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: 0.11 Total: -9.80 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.03 -8.35 -39.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957601272.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.551 kcal (2) G-P(sol) polarization free energy of solvation -31.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds