Wall clock time and date at job start Wed Apr 1 2020 06:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50703 * 109.46787 * 2 1 4 4 N 1.33694 * 126.27550 * 270.13406 * 3 2 1 5 5 C 1.30619 * 108.99168 * 180.26020 * 4 3 2 6 6 O 1.33654 * 109.15818 * 359.76590 * 5 4 3 7 7 C 1.35348 * 107.68833 * 0.02562 * 6 5 4 8 8 C 1.46718 * 126.64650 * 179.97438 * 7 6 5 9 9 O 1.21685 * 119.99715 * 187.97939 * 8 7 6 10 10 N 1.34776 * 120.00248 * 7.97488 * 8 7 6 11 11 C 1.46939 * 120.64068 * 355.96685 * 10 8 7 12 12 C 1.53620 * 108.53488 * 126.32800 * 11 10 8 13 13 C 1.53049 * 109.26290 * 54.86831 * 12 11 10 14 14 C 1.53031 * 109.43932 * 58.57064 * 13 12 11 15 15 C 1.53188 * 109.33245 * 181.23249 * 14 13 12 16 16 N 1.46932 * 108.78166 * 305.37261 * 15 14 13 17 17 C 1.36937 * 120.64453 * 233.61619 * 16 15 14 18 18 H 1.08008 * 119.99498 * 36.50366 * 17 16 15 19 19 C 1.38806 * 120.00119 * 216.50245 * 17 16 15 20 20 N 1.31620 * 120.00046 * 359.21837 * 19 17 16 21 21 Si 1.86801 * 119.99947 * 179.21511 * 19 17 16 22 22 H 1.48501 * 109.46972 * 90.00365 * 21 19 17 23 23 H 1.48505 * 109.47077 * 209.99867 * 21 19 17 24 24 H 1.48493 * 109.47064 * 329.99978 * 21 19 17 25 25 C 1.46925 * 118.71320 * 53.63835 * 16 15 14 26 26 C 1.53046 * 109.39156 * 178.59996 * 13 12 11 27 27 C 1.53032 * 109.54456 * 298.56139 * 13 12 11 28 28 C 1.46933 * 120.64628 * 176.25289 * 10 8 7 29 29 H 1.08999 * 109.46939 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47376 * 299.99880 * 1 2 3 31 31 H 1.09005 * 109.47146 * 59.99788 * 1 2 3 32 32 H 1.08994 * 109.47549 * 240.00303 * 2 1 3 33 33 H 1.09001 * 109.46708 * 119.99622 * 2 1 3 34 34 H 1.08008 * 125.41758 * 179.78697 * 5 4 3 35 35 H 1.09000 * 109.58358 * 246.16109 * 11 10 8 36 36 H 1.09000 * 109.58777 * 6.58494 * 11 10 8 37 37 H 1.08998 * 109.62993 * 294.86468 * 12 11 10 38 38 H 1.09005 * 109.42298 * 174.74108 * 12 11 10 39 39 H 1.08998 * 109.49431 * 301.19158 * 14 13 12 40 40 H 1.09000 * 109.48921 * 61.27584 * 14 13 12 41 41 H 1.09001 * 109.58182 * 185.58994 * 15 14 13 42 42 H 1.09002 * 109.70281 * 65.23721 * 15 14 13 43 43 H 0.96996 * 120.00130 * 180.02562 * 20 19 17 44 44 H 1.08997 * 109.58581 * 186.56562 * 25 16 15 45 45 H 1.09007 * 109.70189 * 66.21617 * 25 16 15 46 46 H 1.09000 * 109.48909 * 298.68872 * 26 13 12 47 47 H 1.09002 * 109.49490 * 58.77040 * 26 13 12 48 48 H 1.08999 * 109.49336 * 301.33595 * 27 13 12 49 49 H 1.08994 * 109.49043 * 181.25876 * 27 13 12 50 50 H 1.09001 * 109.58197 * 353.40004 * 28 10 8 51 51 H 1.09000 * 109.58819 * 113.68608 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2935 2.1675 -1.0778 5 6 2.7153 3.3412 -0.6898 6 8 2.7315 3.3819 0.6461 7 6 2.3016 2.1812 1.0993 8 6 2.1582 1.7748 2.5017 9 8 1.8992 0.6180 2.7765 10 7 2.3134 2.6826 3.4857 11 6 2.7127 4.0622 3.1756 12 6 1.6932 5.0201 3.8104 13 6 1.5823 4.7200 5.3071 14 6 2.9564 4.8790 5.9616 15 6 2.8489 4.5482 7.4534 16 7 1.7969 5.3836 8.0486 17 6 2.0578 6.1560 9.1488 18 1 3.0191 6.6370 9.2553 19 6 1.0871 6.3209 10.1272 20 7 -0.0896 5.7474 9.9900 21 14 1.4508 7.3567 11.6386 22 1 1.0706 8.7677 11.3748 23 1 0.6699 6.8410 12.7917 24 1 2.9007 7.2847 11.9508 25 6 0.4593 5.3738 7.4407 26 6 0.5932 5.6956 5.9491 27 6 1.0856 3.2863 5.5063 28 6 2.0926 2.3103 4.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8934 -0.5137 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.0046 4.1502 -1.3443 35 1 3.7043 4.2562 3.5844 36 1 2.7264 4.2046 2.0950 37 1 0.7199 4.8839 3.3389 38 1 2.0254 6.0486 3.6693 39 1 3.6655 4.1997 5.4885 40 1 3.3001 5.9063 5.8406 41 1 3.8005 4.7552 7.9430 42 1 2.5947 3.4957 7.5791 43 1 -0.7681 5.8629 10.6734 44 1 -0.1663 6.1255 7.9220 45 1 0.0073 4.3895 7.5631 46 1 0.9582 6.7156 5.8283 47 1 -0.3795 5.5974 5.4670 48 1 0.1176 3.1658 5.0199 49 1 0.9857 3.0808 6.5720 50 1 1.6967 1.2960 4.9410 51 1 3.0355 2.3624 5.4343 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957601272.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:02:24 Heat of formation + Delta-G solvation = -5.855150 kcal Electronic energy + Delta-G solvation = -32299.897121 eV Core-core repulsion = 28200.796443 eV Total energy + Delta-G solvation = -4099.100678 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.53751 -41.63715 -39.99018 -37.63407 -36.63262 -35.10973 -34.03446 -33.04723 -32.31923 -31.63708 -30.69931 -29.40038 -26.85484 -25.88445 -24.88415 -24.50831 -24.18414 -23.41747 -22.52611 -21.96831 -20.96348 -19.41053 -18.68682 -18.24223 -17.87138 -17.69742 -17.16744 -16.86461 -16.16889 -16.02569 -15.72778 -15.62059 -15.32593 -15.15884 -15.07692 -14.82729 -14.74369 -14.56964 -14.41108 -14.04542 -13.74094 -13.34613 -13.16367 -12.96047 -12.84655 -12.77297 -12.60465 -12.49311 -12.29318 -12.21979 -12.19560 -12.12918 -12.08338 -11.84638 -11.77010 -11.56863 -11.19270 -11.07610 -11.03903 -10.88480 -10.47942 -10.12982 -9.63404 -8.46990 -7.84170 -5.40708 -0.23733 1.32336 1.41614 1.45885 1.47121 1.56002 1.89549 2.03069 2.50445 3.11075 3.30788 3.39908 3.63215 3.75355 3.79921 3.81355 3.85534 4.09616 4.16592 4.26335 4.31444 4.32913 4.38358 4.41219 4.48016 4.57136 4.62015 4.68662 4.73989 4.78269 4.81929 4.82316 4.95686 4.98701 5.01555 5.04289 5.08162 5.13686 5.17804 5.24007 5.29447 5.30214 5.40932 5.42380 5.50432 5.58807 5.63038 5.69638 5.89780 6.16286 6.48152 6.53569 6.85646 7.21608 7.90773 8.44825 9.19449 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.026524 B = 0.002465 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.378166 B =11354.417874 C =11715.786016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.056 4.056 3 C 0.078 3.922 4 N -0.521 5.521 5 C 0.220 3.780 6 O -0.183 6.183 7 C -0.130 4.130 8 C 0.601 3.399 9 O -0.548 6.548 10 N -0.593 5.593 11 C 0.092 3.908 12 C -0.113 4.113 13 C -0.042 4.042 14 C -0.111 4.111 15 C 0.141 3.859 16 N -0.609 5.609 17 C -0.263 4.263 18 H 0.062 0.938 19 C -0.045 4.045 20 N -0.934 5.934 21 Si 0.965 3.035 22 H -0.284 1.284 23 H -0.295 1.295 24 H -0.269 1.269 25 C 0.180 3.820 26 C -0.119 4.119 27 C -0.115 4.115 28 C 0.121 3.879 29 H 0.079 0.921 30 H 0.038 0.962 31 H 0.058 0.942 32 H 0.093 0.907 33 H 0.088 0.912 34 H 0.307 0.693 35 H 0.088 0.912 36 H 0.119 0.881 37 H 0.062 0.938 38 H 0.090 0.910 39 H 0.078 0.922 40 H 0.057 0.943 41 H 0.046 0.954 42 H 0.016 0.984 43 H 0.249 0.751 44 H 0.049 0.951 45 H -0.003 1.003 46 H 0.051 0.949 47 H 0.056 0.944 48 H 0.056 0.944 49 H 0.064 0.936 50 H 0.082 0.918 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.079 -4.456 -23.701 24.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.093 4.093 3 C -0.045 4.045 4 N -0.249 5.249 5 C -0.003 4.003 6 O -0.071 6.071 7 C -0.184 4.184 8 C 0.390 3.610 9 O -0.429 6.429 10 N -0.324 5.324 11 C -0.028 4.028 12 C -0.151 4.151 13 C -0.042 4.042 14 C -0.150 4.150 15 C 0.016 3.984 16 N -0.333 5.333 17 C -0.393 4.393 18 H 0.079 0.921 19 C -0.241 4.241 20 N -0.579 5.579 21 Si 0.793 3.207 22 H -0.211 1.211 23 H -0.222 1.222 24 H -0.194 1.194 25 C 0.054 3.946 26 C -0.158 4.158 27 C -0.154 4.154 28 C -0.001 4.001 29 H 0.098 0.902 30 H 0.057 0.943 31 H 0.077 0.923 32 H 0.111 0.889 33 H 0.106 0.894 34 H 0.322 0.678 35 H 0.106 0.894 36 H 0.136 0.864 37 H 0.080 0.920 38 H 0.108 0.892 39 H 0.096 0.904 40 H 0.076 0.924 41 H 0.065 0.935 42 H 0.034 0.966 43 H 0.058 0.942 44 H 0.067 0.933 45 H 0.015 0.985 46 H 0.069 0.931 47 H 0.075 0.925 48 H 0.074 0.926 49 H 0.083 0.917 50 H 0.100 0.900 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.780 -5.175 -23.997 25.220 hybrid contribution -0.233 0.864 2.038 2.226 sum 5.547 -4.311 -21.959 23.056 Atomic orbital electron populations 1.21593 0.93327 1.03068 1.01185 1.20205 0.97018 0.87728 1.04392 1.22247 0.97057 0.98463 0.86755 1.70393 1.18732 1.04560 1.31240 1.29706 0.93211 0.97588 0.79839 1.84613 1.65160 1.32634 1.24657 1.22602 1.14211 0.86164 0.95429 1.16694 0.77299 0.84940 0.82116 1.90816 1.51388 1.18501 1.82172 1.48090 1.66212 1.11610 1.06482 1.22591 0.98731 0.78675 1.02841 1.21989 0.99377 0.99962 0.93744 1.20337 0.95396 0.93837 0.94665 1.21993 0.96014 1.01354 0.95613 1.21082 0.91462 0.92835 0.93046 1.44177 1.07950 1.49634 1.31574 1.19435 1.00201 1.22841 0.96849 0.92080 1.26050 0.97011 1.00851 1.00155 1.70104 1.05118 1.47819 1.34902 0.85310 0.77826 0.78074 0.79463 1.21109 1.22158 1.19400 1.20580 0.86768 0.97413 0.89799 1.22061 0.98220 0.98453 0.97028 1.21890 0.98040 0.94712 1.00714 1.21642 0.99951 0.99071 0.79430 0.90195 0.94275 0.92316 0.88852 0.89374 0.67842 0.89412 0.86411 0.91968 0.89153 0.90386 0.92381 0.93532 0.96600 0.94196 0.93268 0.98531 0.93063 0.92532 0.92562 0.91703 0.89964 0.89987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.52 9.89 71.98 0.71 -1.81 16 2 C -0.06 -1.13 6.01 29.85 0.18 -0.95 16 3 C 0.08 1.71 6.41 41.83 0.27 1.98 16 4 N -0.52 -9.67 11.26 -303.12 -3.41 -13.08 16 5 C 0.22 2.46 13.21 130.42 1.72 4.18 16 6 O -0.18 -2.93 7.28 -7.04 -0.05 -2.98 16 7 C -0.13 -2.90 6.88 24.05 0.17 -2.73 16 8 C 0.60 15.93 7.66 86.46 0.66 16.59 16 9 O -0.55 -17.20 14.20 -4.30 -0.06 -17.26 16 10 N -0.59 -14.36 2.97 -822.70 -2.44 -16.80 16 11 C 0.09 1.79 5.88 86.50 0.51 2.30 16 12 C -0.11 -2.46 4.92 30.82 0.15 -2.31 16 13 C -0.04 -1.22 0.51 -52.13 -0.03 -1.24 16 14 C -0.11 -3.33 4.15 30.67 0.13 -3.20 16 15 C 0.14 5.57 6.04 86.36 0.52 6.09 16 16 N -0.61 -29.90 2.98 -699.10 -2.09 -31.99 16 17 C -0.26 -14.31 9.54 84.03 0.80 -13.51 16 18 H 0.06 3.26 7.83 -2.91 -0.02 3.23 16 19 C -0.05 -2.51 5.26 84.86 0.45 -2.06 16 20 N -0.93 -55.03 10.84 21.65 0.23 -54.80 16 21 Si 0.97 44.68 29.55 68.60 2.03 46.71 16 22 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 23 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 24 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 25 C 0.18 8.52 4.75 86.36 0.41 8.93 16 26 C -0.12 -4.25 4.90 30.67 0.15 -4.10 16 27 C -0.12 -3.47 4.15 30.67 0.13 -3.35 16 28 C 0.12 3.21 5.95 86.36 0.51 3.72 16 29 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 32 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.09 2.05 6.34 -2.39 -0.02 2.04 16 34 H 0.31 -0.51 8.06 -2.91 -0.02 -0.54 16 35 H 0.09 1.55 6.66 -2.39 -0.02 1.53 16 36 H 0.12 1.96 3.81 -50.02 -0.19 1.77 16 37 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.09 1.74 8.14 -2.38 -0.02 1.73 16 39 H 0.08 1.94 4.98 -2.39 -0.01 1.92 16 40 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 41 H 0.05 1.84 7.93 -2.39 -0.02 1.82 16 42 H 0.02 0.64 6.74 -2.39 -0.02 0.63 16 43 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 44 H 0.05 2.71 6.13 -2.39 -0.01 2.70 16 45 H 0.00 -0.17 6.67 -2.38 -0.02 -0.18 16 46 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 47 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 48 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 49 H 0.06 2.34 4.99 -2.39 -0.01 2.33 16 50 H 0.08 2.34 7.03 -2.39 -0.02 2.33 16 51 H 0.08 2.08 6.74 -2.39 -0.02 2.06 16 Total: -1.00 -70.51 380.13 2.42 -68.09 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: 0.77 Total: 13.57 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: 7.44 Total: 8.53 kcal Atomic # 7 Polarization: -108.96 SS G_CDS: -7.70 Total: -116.67 kcal Atomic # 8 Polarization: -20.12 SS G_CDS: -0.11 Total: -20.24 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -70.51 2.42 -68.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957601272.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.239 kcal (2) G-P(sol) polarization free energy of solvation -70.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds