Wall clock time and date at job start Wed Apr 1 2020 06:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50700 * 109.47146 * 2 1 4 4 O 1.34251 * 126.52338 * 270.18231 * 3 2 1 5 5 C 1.34053 * 108.22546 * 180.26600 * 4 3 2 6 6 N 1.29925 * 109.24386 * 359.73170 * 5 4 3 7 7 C 1.36066 * 108.48111 * 0.02562 * 6 5 4 8 8 C 1.47420 * 126.45568 * 179.97438 * 7 6 5 9 9 O 1.21611 * 120.00168 * 173.87282 * 8 7 6 10 10 N 1.34774 * 119.99638 * 353.87090 * 8 7 6 11 11 C 1.46927 * 120.63304 * 352.86563 * 10 8 7 12 12 C 1.53194 * 108.77303 * 233.62953 * 11 10 8 13 13 C 1.53045 * 109.31123 * 305.36136 * 12 11 10 14 14 C 1.53042 * 109.53814 * 61.36485 * 13 12 11 15 15 H 1.09002 * 109.52061 * 58.60162 * 14 13 12 16 16 C 1.53001 * 109.49929 * 178.68184 * 14 13 12 17 17 H 1.09003 * 110.88358 * 55.95382 * 16 14 13 18 18 C 1.55145 * 111.00684 * 179.83951 * 16 14 13 19 19 C 1.54322 * 102.94557 * 153.57862 * 18 16 14 20 20 N 1.47027 * 107.26691 * 337.80586 * 19 18 16 21 21 C 1.36942 * 125.64505 * 178.95885 * 20 19 18 22 22 H 1.07997 * 119.99609 * 179.97438 * 21 20 19 23 23 C 1.38817 * 119.99904 * 359.97438 * 21 20 19 24 24 N 1.31609 * 120.00039 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99313 * 179.97438 * 23 21 20 26 26 H 1.48491 * 109.47583 * 60.00173 * 25 23 21 27 27 H 1.48503 * 109.46627 * 180.02562 * 25 23 21 28 28 H 1.48502 * 109.47253 * 299.99310 * 25 23 21 29 29 C 1.47420 * 108.70629 * 358.94223 * 20 19 18 30 30 C 1.46926 * 120.63144 * 172.87959 * 10 8 7 31 31 H 1.09004 * 109.46854 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47344 * 300.00265 * 1 2 3 33 33 H 1.08998 * 109.46826 * 60.00698 * 1 2 3 34 34 H 1.09003 * 109.47392 * 239.99305 * 2 1 3 35 35 H 1.09003 * 109.46905 * 119.99789 * 2 1 3 36 36 H 1.08004 * 125.37840 * 179.70216 * 5 4 3 37 37 H 1.09005 * 109.58481 * 353.41017 * 11 10 8 38 38 H 1.08993 * 109.59323 * 113.83966 * 11 10 8 39 39 H 1.08996 * 109.49779 * 65.30963 * 12 11 10 40 40 H 1.08998 * 109.49756 * 185.41284 * 12 11 10 41 41 H 1.08996 * 109.46150 * 301.34699 * 13 12 11 42 42 H 1.09001 * 109.45720 * 181.38488 * 13 12 11 43 43 H 1.09002 * 110.71873 * 271.94398 * 18 16 14 44 44 H 1.09003 * 110.72156 * 35.03582 * 18 16 14 45 45 H 1.09002 * 109.88437 * 97.22247 * 19 18 16 46 46 H 1.08996 * 109.88618 * 218.39351 * 19 18 16 47 47 H 0.97006 * 120.00133 * 180.02562 * 24 23 21 48 48 H 1.09001 * 110.36375 * 265.29108 * 29 20 19 49 49 H 1.08997 * 110.37097 * 142.96232 * 29 20 19 50 50 H 1.09011 * 109.58554 * 6.58553 * 30 10 8 51 51 H 1.08996 * 109.59050 * 246.16193 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2955 2.1753 -1.0789 5 6 2.7265 3.3728 -0.6580 6 7 2.7356 3.3923 0.6411 7 6 2.3028 2.1844 1.0936 8 6 2.1595 1.7772 2.5032 9 8 1.6556 0.7050 2.7782 10 7 2.5869 2.5931 3.4871 11 6 3.3363 3.8170 3.1721 12 6 4.6465 3.8109 3.9658 13 6 4.3362 3.6292 5.4535 14 6 3.6342 2.2866 5.6696 15 1 4.2730 1.4796 5.3107 16 6 3.3538 2.0912 7.1610 17 1 2.7737 2.9235 7.5596 18 6 2.6375 0.7396 7.4198 19 6 3.0458 0.4040 8.8697 20 7 4.2819 1.1461 9.1579 21 6 4.9593 1.1366 10.3479 22 1 5.8625 1.7181 10.4597 23 6 4.4852 0.3795 11.4105 24 7 3.3843 -0.3288 11.2743 25 14 5.4099 0.3661 13.0335 26 1 5.4753 1.7462 13.5775 27 1 4.7030 -0.5139 13.9986 28 1 6.7867 -0.1456 12.8147 29 6 4.6713 1.9018 7.9535 30 6 2.3126 2.2755 4.8951 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5137 -0.8900 34 1 1.8934 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 3.0204 4.1918 -1.2978 37 1 3.5559 3.8465 2.1048 38 1 2.7449 4.6894 3.4498 39 1 5.2760 2.9899 3.6227 40 1 5.1673 4.7566 3.8157 41 1 3.6865 4.4370 5.7901 42 1 5.2652 3.6492 6.0232 43 1 1.5565 0.8546 7.3403 44 1 2.9943 -0.0245 6.7291 45 1 2.2588 0.7133 9.5575 46 1 3.2254 -0.6668 8.9659 47 1 3.0528 -0.8575 12.0169 48 1 5.3899 1.3322 7.3642 49 1 5.0893 2.8693 8.2313 50 1 1.8565 1.2878 4.9648 51 1 1.6376 3.0221 5.3134 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961117304.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:01:43 Heat of formation + Delta-G solvation = 11.890252 kcal Electronic energy + Delta-G solvation = -31373.468766 eV Core-core repulsion = 27275.137586 eV Total energy + Delta-G solvation = -4098.331180 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.85376 -40.17418 -38.24498 -36.66424 -35.33441 -34.46058 -33.44189 -32.22983 -31.04520 -29.66584 -28.84305 -27.32467 -25.84748 -24.79103 -24.16937 -23.53359 -22.81671 -21.88883 -20.80914 -19.80195 -19.52905 -19.41929 -17.67782 -17.19833 -16.81042 -16.67980 -15.99188 -15.42134 -15.30350 -14.88283 -14.66905 -14.41540 -14.40076 -13.93017 -13.86208 -13.67459 -13.39426 -13.10296 -12.93497 -12.92541 -12.30134 -12.21508 -12.06850 -11.92295 -11.74173 -11.68570 -11.51894 -11.23823 -11.07938 -10.94130 -10.80383 -10.71551 -10.53185 -10.37704 -10.06743 -10.02307 -9.84069 -9.69275 -9.59549 -9.47373 -9.32099 -8.56449 -8.52108 -6.73812 -5.63322 -2.96360 0.78000 1.67668 2.17502 2.86850 3.10318 3.44807 3.48611 3.50221 3.64467 4.20753 4.36653 4.55975 4.68869 4.79972 4.86033 4.91519 4.99388 5.02600 5.09072 5.17387 5.32179 5.36701 5.43166 5.52930 5.54968 5.55258 5.64422 5.67623 5.75129 5.80492 5.83143 5.88109 5.89982 6.01561 6.06890 6.10342 6.15487 6.21271 6.36958 6.42457 6.54158 6.58956 6.68523 6.70136 6.85598 7.03570 7.08569 7.37016 7.64383 7.74874 7.91711 8.03224 8.35054 9.30475 9.91257 10.58557 11.48314 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.022060 B = 0.002244 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.988879 B =12475.920323 C =13432.126767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.046 4.046 3 C 0.047 3.953 4 O -0.198 6.198 5 C 0.172 3.828 6 N -0.460 5.460 7 C -0.070 4.070 8 C 0.598 3.402 9 O -0.533 6.533 10 N -0.591 5.591 11 C 0.079 3.921 12 C -0.133 4.133 13 C -0.117 4.117 14 C -0.085 4.085 15 H 0.073 0.927 16 C -0.095 4.095 17 H 0.074 0.926 18 C -0.140 4.140 19 C 0.178 3.822 20 N -0.607 5.607 21 C -0.227 4.227 22 H 0.076 0.924 23 C -0.010 4.010 24 N -0.922 5.922 25 Si 0.911 3.089 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.286 1.286 29 C 0.145 3.855 30 C 0.117 3.883 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.054 0.946 34 H 0.084 0.916 35 H 0.117 0.883 36 H 0.255 0.745 37 H 0.134 0.866 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.072 0.928 41 H 0.062 0.938 42 H 0.069 0.931 43 H 0.057 0.943 44 H 0.056 0.944 45 H 0.044 0.956 46 H 0.040 0.960 47 H 0.252 0.748 48 H 0.016 0.984 49 H 0.035 0.965 50 H 0.096 0.904 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.428 8.221 -28.345 29.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.083 4.083 3 C -0.009 4.009 4 O -0.084 6.084 5 C -0.055 4.055 6 N -0.189 5.189 7 C -0.189 4.189 8 C 0.385 3.615 9 O -0.411 6.411 10 N -0.322 5.322 11 C -0.043 4.043 12 C -0.171 4.171 13 C -0.154 4.154 14 C -0.105 4.105 15 H 0.091 0.909 16 C -0.115 4.115 17 H 0.092 0.908 18 C -0.179 4.179 19 C 0.054 3.946 20 N -0.333 5.333 21 C -0.355 4.355 22 H 0.094 0.906 23 C -0.206 4.206 24 N -0.570 5.570 25 Si 0.742 3.258 26 H -0.212 1.212 27 H -0.216 1.216 28 H -0.212 1.212 29 C 0.019 3.981 30 C -0.005 4.005 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.073 0.927 34 H 0.103 0.897 35 H 0.135 0.865 36 H 0.270 0.730 37 H 0.151 0.849 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.090 0.910 41 H 0.081 0.919 42 H 0.088 0.912 43 H 0.076 0.924 44 H 0.075 0.925 45 H 0.062 0.938 46 H 0.058 0.942 47 H 0.062 0.938 48 H 0.033 0.967 49 H 0.054 0.946 50 H 0.114 0.886 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.552 8.055 -27.609 28.978 hybrid contribution 0.457 -0.168 0.501 0.698 sum -3.095 7.886 -27.108 28.401 Atomic orbital electron populations 1.21703 0.92881 1.03075 1.02471 1.20390 0.97283 0.85239 1.05411 1.23839 0.98351 0.95550 0.83195 1.84380 1.63526 1.24216 1.36316 1.28172 0.98673 0.87160 0.91543 1.70565 1.17754 1.21115 1.09477 1.21526 1.10365 0.91333 0.95678 1.16768 0.78593 0.83653 0.82492 1.90798 1.45877 1.21612 1.82818 1.47902 1.54147 1.23898 1.06285 1.22628 0.91836 0.85564 1.04285 1.21929 0.97158 1.02029 0.96012 1.21617 1.01129 0.97228 0.95442 1.21449 0.95868 0.97875 0.95293 0.90876 1.22314 0.98729 0.98233 0.92193 0.90802 1.22926 0.98849 0.95923 1.00155 1.21118 0.88573 0.95950 0.89005 1.44494 1.27059 1.53014 1.08775 1.19014 1.05138 1.23700 0.87668 0.90625 1.24800 0.97853 0.99694 0.98262 1.69967 1.22614 1.33449 1.30983 0.86210 0.78844 0.77315 0.83459 1.21232 1.21642 1.21248 1.21517 0.93410 0.94719 0.88468 1.21802 0.97439 1.02851 0.78400 0.90932 0.91539 0.92735 0.89719 0.86517 0.72981 0.84949 0.91954 0.91960 0.90974 0.91884 0.91213 0.92403 0.92531 0.93772 0.94211 0.93791 0.96663 0.94642 0.88557 0.91388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 9.89 37.16 0.37 -0.75 16 2 C -0.05 -0.38 5.87 -27.88 -0.16 -0.55 16 3 C 0.05 0.46 6.69 -35.08 -0.23 0.23 16 4 O -0.20 -1.59 10.73 6.52 0.07 -1.52 16 5 C 0.17 1.08 13.19 51.96 0.69 1.77 16 6 N -0.46 -4.39 7.81 -11.48 -0.09 -4.48 16 7 C -0.07 -0.81 6.68 -83.02 -0.55 -1.36 16 8 C 0.60 8.30 7.67 -12.52 -0.10 8.21 16 9 O -0.53 -8.46 14.31 5.27 0.08 -8.39 16 10 N -0.59 -7.76 2.97 -174.04 -0.52 -8.28 16 11 C 0.08 0.87 6.11 -3.71 -0.02 0.85 16 12 C -0.13 -1.42 6.08 -26.61 -0.16 -1.58 16 13 C -0.12 -1.45 5.05 -26.69 -0.13 -1.58 16 14 C -0.09 -1.23 1.86 -90.50 -0.17 -1.40 16 15 H 0.07 1.16 8.07 -51.93 -0.42 0.74 16 16 C -0.09 -1.67 2.56 -88.47 -0.23 -1.90 16 17 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 18 C -0.14 -2.74 5.40 -24.90 -0.13 -2.87 16 19 C 0.18 4.52 5.37 -3.06 -0.02 4.50 16 20 N -0.61 -16.09 3.39 -170.07 -0.58 -16.67 16 21 C -0.23 -6.52 10.28 -15.05 -0.15 -6.68 16 22 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 23 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 24 N -0.92 -27.94 10.31 55.49 0.57 -27.37 16 25 Si 0.91 22.65 29.55 -169.99 -5.02 17.62 16 26 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 27 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 28 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 29 C 0.15 3.08 5.95 -2.53 -0.02 3.06 16 30 C 0.12 1.62 5.39 -3.71 -0.02 1.60 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.12 1.16 6.63 -51.93 -0.34 0.82 16 36 H 0.25 0.22 8.06 -52.48 -0.42 -0.20 16 37 H 0.13 1.40 4.09 -61.27 -0.25 1.15 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.07 0.90 7.46 -51.93 -0.39 0.51 16 43 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.06 1.08 8.04 -51.93 -0.42 0.66 16 45 H 0.04 1.23 7.38 -51.93 -0.38 0.85 16 46 H 0.04 1.12 7.51 -51.93 -0.39 0.73 16 47 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 48 H 0.02 0.33 7.98 -51.93 -0.41 -0.08 16 49 H 0.04 0.73 8.05 -51.93 -0.42 0.31 16 50 H 0.10 1.49 6.37 -51.92 -0.33 1.16 16 51 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 395.29 15.07 5.96 5.96 Total: -1.00 -34.19 395.29 -9.05 -43.25 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -8.38 Total: -1.27 kcal Atomic # 6 Polarization: 2.30 SS G_CDS: -1.15 Total: 1.16 kcal Atomic # 7 Polarization: -56.19 SS G_CDS: -0.61 Total: -56.81 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.15 Total: -9.91 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.19 -9.05 -43.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961117304.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.137 kcal (2) G-P(sol) polarization free energy of solvation -34.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds