Wall clock time and date at job start Wed Apr 1 2020 06:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50706 * 109.46983 * 2 1 4 4 O 1.34255 * 126.52252 * 270.18589 * 3 2 1 5 5 C 1.34057 * 108.22497 * 180.26450 * 4 3 2 6 6 N 1.29937 * 109.24124 * 359.73635 * 5 4 3 7 7 C 1.36061 * 108.47797 * 359.97438 * 6 5 4 8 8 C 1.47424 * 126.44933 * 179.97438 * 7 6 5 9 9 O 1.21614 * 119.99932 * 174.21969 * 8 7 6 10 10 N 1.34774 * 119.99827 * 354.23208 * 8 7 6 11 11 C 1.46930 * 120.63110 * 354.02576 * 10 8 7 12 12 C 1.53188 * 108.77262 * 126.41742 * 11 10 8 13 13 C 1.53045 * 109.31372 * 54.63773 * 12 11 10 14 14 C 1.53036 * 109.53679 * 298.63199 * 13 12 11 15 15 H 1.08995 * 109.52939 * 301.40168 * 14 13 12 16 16 C 1.52999 * 109.49865 * 181.31363 * 14 13 12 17 17 H 1.09004 * 110.78293 * 298.38091 * 16 14 13 18 18 C 1.55155 * 110.72171 * 175.13764 * 16 14 13 19 19 C 1.54906 * 101.58395 * 206.13775 * 18 16 14 20 20 N 1.47747 * 104.84413 * 37.09202 * 19 18 16 21 21 C 1.36934 * 125.82518 * 155.82669 * 20 19 18 22 22 H 1.07995 * 120.00093 * 179.91489 * 21 20 19 23 23 C 1.38815 * 119.99984 * 359.91397 * 21 20 19 24 24 N 1.31618 * 119.99678 * 359.97438 * 23 21 20 25 25 Si 1.86793 * 120.00092 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47091 * 59.99928 * 25 23 21 27 27 H 1.48501 * 109.47273 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.47214 * 300.00195 * 25 23 21 29 29 C 1.47022 * 108.52548 * 335.75534 * 20 19 18 30 30 C 1.46927 * 120.63134 * 174.05718 * 10 8 7 31 31 H 1.09006 * 109.46752 * 60.00240 * 1 2 3 32 32 H 1.08993 * 109.46851 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47065 * 300.00595 * 1 2 3 34 34 H 1.08998 * 109.47713 * 239.99759 * 2 1 3 35 35 H 1.08999 * 109.46930 * 119.99103 * 2 1 3 36 36 H 1.07999 * 125.37674 * 179.69550 * 5 4 3 37 37 H 1.08998 * 109.59050 * 246.20599 * 11 10 8 38 38 H 1.09005 * 109.58665 * 6.49028 * 11 10 8 39 39 H 1.09006 * 109.49835 * 174.58931 * 12 11 10 40 40 H 1.09005 * 109.50038 * 294.68403 * 12 11 10 41 41 H 1.08997 * 109.46118 * 178.61115 * 13 12 11 42 42 H 1.08996 * 109.45730 * 58.65608 * 13 12 11 43 43 H 1.08997 * 111.00707 * 324.21188 * 18 16 14 44 44 H 1.09001 * 111.00222 * 88.06485 * 18 16 14 45 45 H 1.08999 * 110.36741 * 155.85130 * 19 18 16 46 46 H 1.09005 * 110.36516 * 278.06623 * 19 18 16 47 47 H 0.97001 * 119.99951 * 179.97438 * 24 23 21 48 48 H 1.08994 * 109.88226 * 241.67789 * 29 20 19 49 49 H 1.09003 * 109.88318 * 120.66835 * 29 20 19 50 50 H 1.09000 * 109.58765 * 113.79285 * 30 10 8 51 51 H 1.09005 * 109.58618 * 353.36926 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 2.2953 2.1754 -1.0789 5 6 2.7264 3.3730 -0.6581 6 7 2.7356 3.3924 0.6411 7 6 2.3019 2.1848 1.0936 8 6 2.1583 1.7776 2.5032 9 8 1.6594 0.7032 2.7780 10 7 2.5799 2.5963 3.4873 11 6 3.3013 3.8368 3.1716 12 6 2.5928 5.0079 3.8595 13 6 2.4698 4.7160 5.3568 14 6 1.6298 3.4539 5.5649 15 1 0.6446 3.5945 5.1203 16 6 1.4799 3.1814 7.0629 17 1 2.4524 3.0072 7.5236 18 6 0.5321 1.9781 7.3099 19 6 -0.0083 2.2935 8.7270 20 7 -0.1636 3.7625 8.7546 21 6 -1.0113 4.4636 9.5700 22 1 -1.0479 5.5414 9.5120 23 6 -1.8234 3.7891 10.4713 24 7 -1.7791 2.4755 10.5416 25 14 -2.9792 4.7455 11.5843 26 1 -3.9334 5.5244 10.7548 27 1 -3.7307 3.7995 12.4477 28 1 -2.1918 5.6732 12.4356 29 6 0.7469 4.3473 7.7593 30 6 2.3274 2.2651 4.8963 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8899 34 1 1.8934 -0.5138 -0.8899 35 1 1.8933 -0.5137 0.8901 36 1 3.0203 4.1919 -1.2978 37 1 4.3266 3.7658 3.5347 38 1 3.3057 3.9924 2.0927 39 1 3.1715 5.9200 3.7129 40 1 1.5987 5.1343 3.4306 41 1 1.9880 5.5587 5.8526 42 1 3.4628 4.5653 5.7801 43 1 -0.2760 1.9606 6.5787 44 1 1.0840 1.0381 7.3025 45 1 -0.9719 1.8084 8.8822 46 1 0.7048 1.9704 9.4855 47 1 -2.3463 2.0041 11.1717 48 1 1.4691 4.9966 8.2540 49 1 0.1772 4.9178 7.0258 50 1 3.2732 2.0659 5.4000 51 1 1.6870 1.3850 4.9557 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961117305.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:01:47 Heat of formation + Delta-G solvation = 14.815505 kcal Electronic energy + Delta-G solvation = -31487.500484 eV Core-core repulsion = 27389.296153 eV Total energy + Delta-G solvation = -4098.204331 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.85749 -40.16068 -38.25502 -36.63638 -35.34371 -34.44872 -33.43906 -32.19437 -31.02754 -29.66019 -28.85974 -27.30436 -25.80659 -24.81831 -24.17254 -23.53057 -22.75597 -21.92575 -20.78441 -19.91125 -19.50642 -19.27706 -17.70324 -17.16328 -16.82865 -16.69704 -16.00394 -15.43362 -15.27607 -14.83848 -14.74126 -14.45721 -14.36088 -13.90273 -13.80958 -13.68204 -13.41896 -13.07692 -13.01994 -12.87577 -12.35373 -12.24467 -11.98484 -11.79447 -11.73317 -11.50514 -11.44701 -11.28516 -11.14445 -10.94401 -10.85913 -10.76562 -10.49761 -10.33235 -10.07407 -10.01181 -9.84393 -9.67880 -9.56919 -9.31893 -9.31165 -8.58786 -8.54723 -6.74312 -5.57882 -2.98961 0.78569 1.67248 2.17563 2.88421 3.11773 3.44514 3.48253 3.49946 3.64231 4.21425 4.37545 4.55052 4.69616 4.82807 4.88174 4.92979 5.01261 5.05277 5.12607 5.19076 5.32775 5.36522 5.43722 5.53688 5.54857 5.56472 5.61854 5.70474 5.76343 5.81011 5.84466 5.89577 5.94005 6.03644 6.10242 6.14632 6.17628 6.27388 6.40358 6.46983 6.54195 6.64477 6.72927 6.74970 6.88065 7.04242 7.09063 7.39108 7.61257 7.70011 7.94565 8.04359 8.44663 9.29488 9.91109 10.57751 11.46173 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017805 B = 0.002363 C = 0.002226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.258167 B =11844.768571 C =12573.689530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.045 4.045 3 C 0.047 3.953 4 O -0.198 6.198 5 C 0.174 3.826 6 N -0.459 5.459 7 C -0.068 4.068 8 C 0.598 3.402 9 O -0.534 6.534 10 N -0.590 5.590 11 C 0.063 3.937 12 C -0.127 4.127 13 C -0.118 4.118 14 C -0.085 4.085 15 H 0.073 0.927 16 C -0.092 4.092 17 H 0.070 0.930 18 C -0.140 4.140 19 C 0.152 3.848 20 N -0.606 5.606 21 C -0.220 4.220 22 H 0.075 0.925 23 C -0.013 4.013 24 N -0.923 5.923 25 Si 0.914 3.086 26 H -0.286 1.286 27 H -0.290 1.290 28 H -0.286 1.286 29 C 0.145 3.855 30 C 0.118 3.882 31 H 0.054 0.946 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.084 0.916 35 H 0.116 0.884 36 H 0.255 0.745 37 H 0.057 0.943 38 H 0.148 0.852 39 H 0.070 0.930 40 H 0.063 0.937 41 H 0.070 0.930 42 H 0.061 0.939 43 H 0.059 0.941 44 H 0.056 0.944 45 H 0.104 0.896 46 H 0.010 0.990 47 H 0.252 0.748 48 H 0.017 0.983 49 H 0.021 0.979 50 H 0.067 0.933 51 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.296 -0.752 -26.061 28.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.082 4.082 3 C -0.009 4.009 4 O -0.084 6.084 5 C -0.053 4.053 6 N -0.188 5.188 7 C -0.188 4.188 8 C 0.385 3.615 9 O -0.412 6.412 10 N -0.321 5.321 11 C -0.060 4.060 12 C -0.166 4.166 13 C -0.156 4.156 14 C -0.104 4.104 15 H 0.092 0.908 16 C -0.112 4.112 17 H 0.088 0.912 18 C -0.179 4.179 19 C 0.027 3.973 20 N -0.332 5.332 21 C -0.349 4.349 22 H 0.093 0.907 23 C -0.208 4.208 24 N -0.572 5.572 25 Si 0.744 3.256 26 H -0.212 1.212 27 H -0.216 1.216 28 H -0.213 1.213 29 C 0.019 3.981 30 C -0.004 4.004 31 H 0.073 0.927 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.102 0.898 35 H 0.134 0.866 36 H 0.271 0.729 37 H 0.075 0.925 38 H 0.164 0.836 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.088 0.912 42 H 0.080 0.920 43 H 0.078 0.922 44 H 0.075 0.925 45 H 0.122 0.878 46 H 0.028 0.972 47 H 0.062 0.938 48 H 0.035 0.965 49 H 0.039 0.961 50 H 0.085 0.915 51 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 12.053 -0.852 -25.379 28.108 hybrid contribution -0.536 0.456 0.278 0.757 sum 11.517 -0.396 -25.100 27.619 Atomic orbital electron populations 1.21713 0.92797 1.03110 1.02628 1.20387 0.97355 0.85197 1.05290 1.23838 0.98367 0.95583 0.83156 1.84384 1.63519 1.24182 1.36283 1.28204 0.98393 0.87164 0.91537 1.70294 1.18226 1.20909 1.09367 1.21528 1.10308 0.91250 0.95679 1.16770 0.78354 0.83901 0.82496 1.90795 1.45710 1.21846 1.82849 1.47893 1.55328 1.22661 1.06178 1.22931 0.94038 0.82537 1.06478 1.21834 1.01155 0.97603 0.95971 1.21644 1.00175 0.98183 0.95581 1.21483 0.99214 0.94061 0.95682 0.90841 1.22130 0.98912 0.97499 0.92620 0.91162 1.23060 0.97913 0.95867 1.01016 1.21947 1.01340 0.84626 0.89373 1.44587 1.44345 1.02406 1.41819 1.19028 1.13347 0.90459 1.12067 0.90670 1.24783 1.00345 0.95793 0.99901 1.69804 1.42561 1.05525 1.39267 0.86165 0.80624 0.78491 0.80300 1.21230 1.21598 1.21288 1.21260 0.91852 0.93640 0.91336 1.21784 1.00728 0.99078 0.78817 0.92691 0.90924 0.91424 0.89758 0.86581 0.72939 0.92472 0.83558 0.91133 0.91844 0.91175 0.92031 0.92238 0.92492 0.87847 0.97178 0.93766 0.96505 0.96093 0.91477 0.88671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.89 37.16 0.37 -0.83 16 2 C -0.05 -0.38 5.87 -27.88 -0.16 -0.54 16 3 C 0.05 0.46 6.69 -35.08 -0.23 0.23 16 4 O -0.20 -1.60 10.73 6.50 0.07 -1.53 16 5 C 0.17 1.12 13.19 51.96 0.69 1.80 16 6 N -0.46 -4.46 7.73 -11.48 -0.09 -4.55 16 7 C -0.07 -0.80 6.73 -83.02 -0.56 -1.36 16 8 C 0.60 8.43 7.68 -12.52 -0.10 8.33 16 9 O -0.53 -8.55 14.33 5.26 0.08 -8.47 16 10 N -0.59 -7.90 2.97 -174.03 -0.52 -8.41 16 11 C 0.06 0.70 6.33 -3.71 -0.02 0.68 16 12 C -0.13 -1.42 6.08 -26.61 -0.16 -1.59 16 13 C -0.12 -1.52 4.98 -26.69 -0.13 -1.65 16 14 C -0.08 -1.27 1.71 -90.50 -0.15 -1.42 16 15 H 0.07 1.23 8.13 -51.93 -0.42 0.81 16 16 C -0.09 -1.64 2.49 -88.79 -0.22 -1.86 16 17 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 18 C -0.14 -2.78 5.73 -24.59 -0.14 -2.92 16 19 C 0.15 3.84 5.91 -2.35 -0.01 3.83 16 20 N -0.61 -16.15 3.41 -169.82 -0.58 -16.73 16 21 C -0.22 -6.36 10.28 -15.06 -0.15 -6.52 16 22 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 23 C -0.01 -0.38 5.49 -17.43 -0.10 -0.47 16 24 N -0.92 -27.72 10.11 55.49 0.56 -27.16 16 25 Si 0.91 22.64 29.55 -169.99 -5.02 17.61 16 26 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 27 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 28 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 29 C 0.15 3.13 5.83 -3.06 -0.02 3.11 16 30 C 0.12 1.66 5.44 -3.71 -0.02 1.64 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.12 1.12 6.62 -51.93 -0.34 0.78 16 36 H 0.25 0.25 8.06 -52.49 -0.42 -0.18 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.15 1.58 3.66 -77.55 -0.28 1.29 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.07 0.95 7.11 -51.93 -0.37 0.59 16 42 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.06 1.21 8.04 -51.93 -0.42 0.79 16 44 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 45 H 0.10 2.94 5.88 -51.93 -0.31 2.64 16 46 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 47 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 48 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 49 H 0.02 0.46 7.56 -51.93 -0.39 0.06 16 50 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 51 H 0.09 1.50 6.55 -51.93 -0.34 1.16 16 LS Contribution 394.05 15.07 5.94 5.94 Total: -1.00 -33.99 394.05 -9.04 -43.03 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -8.34 Total: -0.19 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: -1.14 Total: 0.46 kcal Atomic # 7 Polarization: -56.23 SS G_CDS: -0.62 Total: -56.85 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: 0.15 Total: -10.00 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.61 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.99 -9.04 -43.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961117305.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.841 kcal (2) G-P(sol) polarization free energy of solvation -33.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds