Wall clock time and date at job start Wed Apr 1 2020 06:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50706 * 109.46983 * 2 1 4 4 O 1.34255 * 126.52252 * 270.18589 * 3 2 1 5 5 C 1.34057 * 108.22497 * 180.26450 * 4 3 2 6 6 N 1.29937 * 109.24124 * 359.73635 * 5 4 3 7 7 C 1.36061 * 108.47797 * 359.97438 * 6 5 4 8 8 C 1.47424 * 126.44933 * 179.97438 * 7 6 5 9 9 O 1.21614 * 119.99932 * 174.21969 * 8 7 6 10 10 N 1.34774 * 119.99827 * 354.23208 * 8 7 6 11 11 C 1.46930 * 120.63110 * 354.02576 * 10 8 7 12 12 C 1.53188 * 108.77262 * 126.41742 * 11 10 8 13 13 C 1.53045 * 109.31372 * 54.63773 * 12 11 10 14 14 C 1.53036 * 109.53679 * 298.63199 * 13 12 11 15 15 H 1.08995 * 109.52939 * 301.40168 * 14 13 12 16 16 C 1.52999 * 109.49865 * 181.31363 * 14 13 12 17 17 H 1.09004 * 110.78293 * 298.38091 * 16 14 13 18 18 C 1.55155 * 110.72171 * 175.13764 * 16 14 13 19 19 C 1.54906 * 101.58395 * 206.13775 * 18 16 14 20 20 N 1.47747 * 104.84413 * 37.09202 * 19 18 16 21 21 C 1.36934 * 125.82518 * 155.82669 * 20 19 18 22 22 H 1.07995 * 120.00093 * 179.91489 * 21 20 19 23 23 C 1.38815 * 119.99984 * 359.91397 * 21 20 19 24 24 N 1.31618 * 119.99678 * 359.97438 * 23 21 20 25 25 Si 1.86793 * 120.00092 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47091 * 59.99928 * 25 23 21 27 27 H 1.48501 * 109.47273 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.47214 * 300.00195 * 25 23 21 29 29 C 1.47022 * 108.52548 * 335.75534 * 20 19 18 30 30 C 1.46927 * 120.63134 * 174.05718 * 10 8 7 31 31 H 1.09006 * 109.46752 * 60.00240 * 1 2 3 32 32 H 1.08993 * 109.46851 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47065 * 300.00595 * 1 2 3 34 34 H 1.08998 * 109.47713 * 239.99759 * 2 1 3 35 35 H 1.08999 * 109.46930 * 119.99103 * 2 1 3 36 36 H 1.07999 * 125.37674 * 179.69550 * 5 4 3 37 37 H 1.08998 * 109.59050 * 246.20599 * 11 10 8 38 38 H 1.09005 * 109.58665 * 6.49028 * 11 10 8 39 39 H 1.09006 * 109.49835 * 174.58931 * 12 11 10 40 40 H 1.09005 * 109.50038 * 294.68403 * 12 11 10 41 41 H 1.08997 * 109.46118 * 178.61115 * 13 12 11 42 42 H 1.08996 * 109.45730 * 58.65608 * 13 12 11 43 43 H 1.08997 * 111.00707 * 324.21188 * 18 16 14 44 44 H 1.09001 * 111.00222 * 88.06485 * 18 16 14 45 45 H 1.08999 * 110.36741 * 155.85130 * 19 18 16 46 46 H 1.09005 * 110.36516 * 278.06623 * 19 18 16 47 47 H 0.97001 * 119.99951 * 179.97438 * 24 23 21 48 48 H 1.08994 * 109.88226 * 241.67789 * 29 20 19 49 49 H 1.09003 * 109.88318 * 120.66835 * 29 20 19 50 50 H 1.09000 * 109.58765 * 113.79285 * 30 10 8 51 51 H 1.09005 * 109.58618 * 353.36926 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 2.2953 2.1754 -1.0789 5 6 2.7264 3.3730 -0.6581 6 7 2.7356 3.3924 0.6411 7 6 2.3019 2.1848 1.0936 8 6 2.1583 1.7776 2.5032 9 8 1.6594 0.7032 2.7780 10 7 2.5799 2.5963 3.4873 11 6 3.3013 3.8368 3.1716 12 6 2.5928 5.0079 3.8595 13 6 2.4698 4.7160 5.3568 14 6 1.6298 3.4539 5.5649 15 1 0.6446 3.5945 5.1203 16 6 1.4799 3.1814 7.0629 17 1 2.4524 3.0072 7.5236 18 6 0.5321 1.9781 7.3099 19 6 -0.0083 2.2935 8.7270 20 7 -0.1636 3.7625 8.7546 21 6 -1.0113 4.4636 9.5700 22 1 -1.0479 5.5414 9.5120 23 6 -1.8234 3.7891 10.4713 24 7 -1.7791 2.4755 10.5416 25 14 -2.9792 4.7455 11.5843 26 1 -3.9334 5.5244 10.7548 27 1 -3.7307 3.7995 12.4477 28 1 -2.1918 5.6732 12.4356 29 6 0.7469 4.3473 7.7593 30 6 2.3274 2.2651 4.8963 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8899 34 1 1.8934 -0.5138 -0.8899 35 1 1.8933 -0.5137 0.8901 36 1 3.0203 4.1919 -1.2978 37 1 4.3266 3.7658 3.5347 38 1 3.3057 3.9924 2.0927 39 1 3.1715 5.9200 3.7129 40 1 1.5987 5.1343 3.4306 41 1 1.9880 5.5587 5.8526 42 1 3.4628 4.5653 5.7801 43 1 -0.2760 1.9606 6.5787 44 1 1.0840 1.0381 7.3025 45 1 -0.9719 1.8084 8.8822 46 1 0.7048 1.9704 9.4855 47 1 -2.3463 2.0041 11.1717 48 1 1.4691 4.9966 8.2540 49 1 0.1772 4.9178 7.0258 50 1 3.2732 2.0659 5.4000 51 1 1.6870 1.3850 4.9557 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961117305.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:01:46 Heat of formation + Delta-G solvation = -6.681483 kcal Electronic energy + Delta-G solvation = -31488.432664 eV Core-core repulsion = 27389.296153 eV Total energy + Delta-G solvation = -4099.136511 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -44.51015 -41.23888 -39.66989 -38.02473 -36.12150 -35.17646 -34.98630 -33.56586 -32.51803 -30.72665 -30.35816 -28.88083 -26.83250 -26.56333 -25.09347 -24.33496 -23.95014 -22.79737 -21.98063 -21.65923 -20.75236 -20.40754 -18.90587 -18.53587 -17.83263 -17.60971 -17.06649 -16.83026 -16.46005 -16.04932 -15.81958 -15.61767 -15.51129 -15.38266 -15.05412 -14.52556 -14.42772 -14.33972 -14.12228 -14.05430 -13.63145 -13.56808 -13.41307 -13.30577 -12.91612 -12.71872 -12.70161 -12.53645 -12.44170 -12.35236 -12.11384 -12.06733 -12.01173 -11.84192 -11.71010 -11.48094 -11.36529 -11.33239 -11.03588 -10.75054 -10.49688 -10.06431 -9.57633 -8.88747 -7.77789 -5.22313 0.03589 1.02031 1.44277 1.48415 1.53967 1.54859 1.95954 2.18237 2.49252 3.03318 3.31194 3.52106 3.58854 3.67706 3.71626 3.77836 3.95843 4.07352 4.14083 4.17079 4.22660 4.25409 4.30622 4.37627 4.42979 4.53129 4.57871 4.64676 4.69464 4.76188 4.78343 4.86082 4.87489 4.90544 4.93322 4.98259 5.07915 5.11240 5.13825 5.17934 5.25575 5.27178 5.39225 5.43508 5.45250 5.52835 5.64515 5.79323 5.81199 6.26898 6.30042 6.51802 7.03141 7.09599 7.78022 8.43680 9.24549 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017805 B = 0.002363 C = 0.002226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.258167 B =11844.768571 C =12573.689530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.045 4.045 3 C 0.048 3.952 4 O -0.195 6.195 5 C 0.202 3.798 6 N -0.485 5.485 7 C -0.096 4.096 8 C 0.588 3.412 9 O -0.566 6.566 10 N -0.593 5.593 11 C 0.061 3.939 12 C -0.119 4.119 13 C -0.115 4.115 14 C -0.072 4.072 15 H 0.051 0.949 16 C -0.075 4.075 17 H 0.086 0.914 18 C -0.125 4.125 19 C 0.154 3.846 20 N -0.629 5.629 21 C -0.241 4.241 22 H 0.080 0.920 23 C -0.071 4.071 24 N -0.951 5.951 25 Si 0.983 3.017 26 H -0.277 1.277 27 H -0.292 1.292 28 H -0.276 1.276 29 C 0.143 3.857 30 C 0.122 3.878 31 H 0.066 0.934 32 H 0.085 0.915 33 H 0.036 0.964 34 H 0.112 0.888 35 H 0.098 0.902 36 H 0.307 0.693 37 H 0.069 0.931 38 H 0.158 0.842 39 H 0.096 0.904 40 H 0.049 0.951 41 H 0.062 0.938 42 H 0.076 0.924 43 H 0.051 0.949 44 H 0.080 0.920 45 H 0.067 0.933 46 H -0.011 1.011 47 H 0.247 0.753 48 H 0.023 0.977 49 H 0.020 0.980 50 H 0.082 0.918 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.947 0.862 -28.599 31.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.082 4.082 3 C -0.009 4.009 4 O -0.081 6.081 5 C -0.025 4.025 6 N -0.213 5.213 7 C -0.214 4.214 8 C 0.377 3.623 9 O -0.446 6.446 10 N -0.323 5.323 11 C -0.060 4.060 12 C -0.157 4.157 13 C -0.153 4.153 14 C -0.092 4.092 15 H 0.069 0.931 16 C -0.095 4.095 17 H 0.104 0.896 18 C -0.164 4.164 19 C 0.029 3.971 20 N -0.356 5.356 21 C -0.370 4.370 22 H 0.098 0.902 23 C -0.263 4.263 24 N -0.601 5.601 25 Si 0.810 3.190 26 H -0.203 1.203 27 H -0.219 1.219 28 H -0.202 1.202 29 C 0.018 3.982 30 C 0.000 4.000 31 H 0.085 0.915 32 H 0.104 0.896 33 H 0.055 0.945 34 H 0.130 0.870 35 H 0.116 0.884 36 H 0.322 0.678 37 H 0.088 0.912 38 H 0.174 0.826 39 H 0.115 0.885 40 H 0.067 0.933 41 H 0.081 0.919 42 H 0.094 0.906 43 H 0.069 0.931 44 H 0.098 0.902 45 H 0.085 0.915 46 H 0.007 0.993 47 H 0.056 0.944 48 H 0.041 0.959 49 H 0.038 0.962 50 H 0.100 0.900 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 13.734 0.799 -27.931 31.135 hybrid contribution -1.033 -0.005 0.984 1.427 sum 12.700 0.793 -26.948 29.801 Atomic orbital electron populations 1.21672 0.92864 1.03677 1.01600 1.20399 0.97204 0.84853 1.05758 1.23971 0.97728 0.96019 0.83197 1.84424 1.63577 1.24670 1.35456 1.29398 0.94932 0.87112 0.91080 1.70150 1.19909 1.20214 1.11073 1.21280 1.12542 0.92804 0.94736 1.17189 0.77781 0.83603 0.83733 1.90766 1.47032 1.23174 1.83609 1.47991 1.55364 1.23385 1.05582 1.23121 0.94231 0.81360 1.07320 1.21784 1.00895 0.98743 0.94316 1.21623 1.00201 0.96377 0.97061 1.21302 0.98828 0.95862 0.93203 0.93084 1.22034 0.98400 0.94583 0.94465 0.89590 1.22876 0.98287 0.98037 0.97159 1.21734 0.99166 0.84231 0.91957 1.44925 1.45056 1.03109 1.42476 1.19439 1.13906 0.91051 1.12579 0.90196 1.25691 1.02142 0.96822 1.01620 1.70074 1.43244 1.07001 1.39753 0.85088 0.78466 0.77139 0.78258 1.20278 1.21852 1.20245 1.21421 0.91385 0.94945 0.90466 1.21614 1.00843 0.97703 0.79849 0.91529 0.89640 0.94459 0.86962 0.88368 0.67786 0.91225 0.82636 0.88523 0.93261 0.91932 0.90551 0.93063 0.90171 0.91452 0.99329 0.94352 0.95911 0.96161 0.90005 0.90709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 9.89 71.98 0.71 -1.57 16 2 C -0.04 -0.72 5.87 29.85 0.18 -0.55 16 3 C 0.05 0.89 6.69 25.19 0.17 1.06 16 4 O -0.19 -2.59 10.73 0.33 0.00 -2.59 16 5 C 0.20 1.85 13.19 130.52 1.72 3.58 16 6 N -0.49 -8.32 7.73 -305.14 -2.36 -10.67 16 7 C -0.10 -2.17 6.73 40.41 0.27 -1.90 16 8 C 0.59 16.76 7.68 86.66 0.67 17.42 16 9 O -0.57 -18.87 14.33 -4.08 -0.06 -18.92 16 10 N -0.59 -15.52 2.97 -822.76 -2.45 -17.97 16 11 C 0.06 1.25 6.33 86.36 0.55 1.79 16 12 C -0.12 -2.41 6.08 30.67 0.19 -2.22 16 13 C -0.12 -2.75 4.98 30.62 0.15 -2.60 16 14 C -0.07 -2.12 1.71 -10.72 -0.02 -2.14 16 15 H 0.05 1.74 8.13 -2.39 -0.02 1.72 16 16 C -0.08 -2.65 2.49 -9.61 -0.02 -2.68 16 17 H 0.09 2.80 8.14 -2.38 -0.02 2.78 16 18 C -0.13 -5.07 5.73 31.98 0.18 -4.89 16 19 C 0.15 8.12 5.91 86.79 0.51 8.63 16 20 N -0.63 -34.43 3.41 -691.17 -2.35 -36.78 16 21 C -0.24 -14.17 10.28 84.03 0.86 -13.31 16 22 H 0.08 4.48 7.83 -2.91 -0.02 4.46 16 23 C -0.07 -4.17 5.49 84.86 0.47 -3.71 16 24 N -0.95 -59.18 10.11 21.65 0.22 -58.96 16 25 Si 0.98 47.24 29.55 68.60 2.03 49.27 16 26 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 27 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 28 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 29 C 0.14 6.18 5.83 86.73 0.51 6.68 16 30 C 0.12 3.40 5.44 86.36 0.47 3.87 16 31 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 32 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.10 1.96 6.62 -2.39 -0.02 1.95 16 36 H 0.31 -1.09 8.06 -2.91 -0.02 -1.11 16 37 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.16 3.00 3.66 -52.97 -0.19 2.81 16 39 H 0.10 1.48 8.14 -2.38 -0.02 1.46 16 40 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 41 H 0.06 1.60 7.11 -2.39 -0.02 1.59 16 42 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.05 2.15 8.04 -2.39 -0.02 2.13 16 44 H 0.08 2.87 8.14 -2.39 -0.02 2.85 16 45 H 0.07 4.05 5.88 -2.39 -0.01 4.03 16 46 H -0.01 -0.63 8.14 -2.38 -0.02 -0.65 16 47 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 48 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 49 H 0.02 0.88 7.56 -2.39 -0.02 0.87 16 50 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 51 H 0.07 2.40 6.55 -2.38 -0.02 2.38 16 Total: -1.00 -77.77 394.05 3.33 -74.43 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: 0.74 Total: 14.72 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: 7.56 Total: 7.47 kcal Atomic # 7 Polarization: -117.44 SS G_CDS: -6.94 Total: -124.38 kcal Atomic # 8 Polarization: -21.46 SS G_CDS: -0.05 Total: -21.51 kcal Atomic # 14 Polarization: 47.24 SS G_CDS: 2.03 Total: 49.27 kcal Total: -77.77 3.33 -74.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961117305.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.752 kcal (2) G-P(sol) polarization free energy of solvation -77.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds