Wall clock time and date at job start Wed Apr 1 2020 05:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50700 * 109.47300 * 2 1 4 4 N 1.30015 * 127.33235 * 269.99816 * 3 2 1 5 5 O 1.20660 * 112.29834 * 179.97438 * 4 3 2 6 6 C 1.33495 * 113.15711 * 359.75732 * 5 4 3 7 7 C 1.37367 * 106.34217 * 0.39256 * 6 5 4 8 8 C 1.47394 * 128.56555 * 179.91615 * 7 6 5 9 9 O 1.21612 * 119.99715 * 227.95574 * 8 7 6 10 10 N 1.34776 * 120.00174 * 47.95153 * 8 7 6 11 11 C 1.46930 * 120.62930 * 355.70225 * 10 8 7 12 12 C 1.53192 * 108.77161 * 126.37099 * 11 10 8 13 13 C 1.53034 * 109.31468 * 54.63612 * 12 11 10 14 14 C 1.53045 * 109.53740 * 298.63220 * 13 12 11 15 15 H 1.09003 * 109.52072 * 301.39907 * 14 13 12 16 16 C 1.52999 * 109.49459 * 181.31745 * 14 13 12 17 17 H 1.08997 * 110.91989 * 302.60756 * 16 14 13 18 18 C 1.55155 * 111.00516 * 66.51450 * 16 14 13 19 19 C 1.54326 * 102.94458 * 153.57141 * 18 16 14 20 20 N 1.47293 * 107.30666 * 337.81568 * 19 18 16 21 21 C 1.36930 * 125.79672 * 178.92324 * 20 19 18 22 22 H 1.08002 * 120.00240 * 180.02562 * 21 20 19 23 23 C 1.38813 * 119.99747 * 0.02562 * 21 20 19 24 24 N 1.31621 * 120.00075 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00077 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47258 * 89.99935 * 25 23 21 27 27 H 1.48497 * 109.47445 * 210.00218 * 25 23 21 28 28 H 1.48498 * 109.46872 * 330.00470 * 25 23 21 29 29 C 1.47432 * 108.55628 * 358.92428 * 20 19 18 30 30 C 1.46924 * 120.62990 * 175.68151 * 10 8 7 31 31 H 1.08994 * 109.47595 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47221 * 300.00012 * 1 2 3 33 33 H 1.08999 * 109.47170 * 59.99407 * 1 2 3 34 34 H 1.09000 * 109.46558 * 239.99634 * 2 1 3 35 35 H 1.09001 * 109.46560 * 120.00165 * 2 1 3 36 36 H 1.07993 * 126.83046 * 180.29828 * 6 5 4 37 37 H 1.09002 * 109.58545 * 246.15170 * 11 10 8 38 38 H 1.08994 * 109.58681 * 6.43886 * 11 10 8 39 39 H 1.09006 * 109.49361 * 174.58642 * 12 11 10 40 40 H 1.09003 * 109.49915 * 294.67887 * 12 11 10 41 41 H 1.09001 * 109.45985 * 178.61366 * 13 12 11 42 42 H 1.09003 * 109.46413 * 58.65187 * 13 12 11 43 43 H 1.08996 * 110.72043 * 271.93733 * 18 16 14 44 44 H 1.09006 * 110.72419 * 35.21118 * 18 16 14 45 45 H 1.09001 * 109.88444 * 97.22146 * 19 18 16 46 46 H 1.09001 * 109.88425 * 218.23702 * 19 18 16 47 47 H 0.97002 * 119.99998 * 179.97438 * 24 23 21 48 48 H 1.08999 * 110.36435 * 265.26521 * 29 20 19 49 49 H 1.08996 * 110.36608 * 143.04555 * 29 20 19 50 50 H 1.08995 * 109.58512 * 113.84389 * 30 10 8 51 51 H 1.08995 * 109.70405 * 353.48283 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2952 2.1641 -1.0338 5 8 2.6832 3.2630 -0.7208 6 6 2.7408 3.4427 0.6007 7 6 2.3292 2.2620 1.1697 8 6 2.2086 1.9239 2.5992 9 8 2.6734 0.8813 3.0187 10 7 1.5832 2.7700 3.4414 11 6 1.0995 4.0747 2.9694 12 6 -0.3858 4.2063 3.3206 13 6 -0.5739 3.9716 4.8211 14 6 -0.1167 2.5555 5.1789 15 1 -0.6921 1.8306 4.6031 16 6 -0.3357 2.3105 6.6731 17 1 0.1950 3.0515 7.2709 18 6 -1.8482 2.2969 7.0186 19 6 -1.9071 1.4076 8.2785 20 7 -0.6987 0.5653 8.2771 21 6 -0.3597 -0.3505 9.2370 22 1 0.5532 -0.9197 9.1418 23 6 -1.1894 -0.5473 10.3323 24 7 -2.3017 0.1467 10.4485 25 14 -0.7273 -1.7971 11.6415 26 1 0.0881 -1.1355 12.6916 27 1 -1.9612 -2.3549 12.2509 28 1 0.0588 -2.8945 11.0226 29 6 0.0864 0.8731 7.0678 30 6 1.3717 2.4052 4.8488 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 1.8932 -0.5139 -0.8900 35 1 1.8932 -0.5139 0.8900 36 1 3.0508 4.3377 1.1194 37 1 1.6621 4.8710 3.4567 38 1 1.2294 4.1436 1.8894 39 1 -0.7333 5.2067 3.0624 40 1 -0.9587 3.4662 2.7619 41 1 -1.6267 4.0889 5.0778 42 1 0.0188 4.6964 5.3792 43 1 -2.2022 3.3037 7.2404 44 1 -2.4254 1.8542 6.2068 45 1 -1.9226 2.0313 9.1722 46 1 -2.7984 0.7808 8.2485 47 1 -2.8817 0.0089 11.2137 48 1 -0.1578 0.1732 6.2686 49 1 1.1531 0.8383 7.2890 50 1 1.9565 3.0654 5.4893 51 1 1.6793 1.3722 5.0109 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961219737.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:52:05 Heat of formation + Delta-G solvation = 21.072335 kcal Electronic energy + Delta-G solvation = -31568.936343 eV Core-core repulsion = 27471.003328 eV Total energy + Delta-G solvation = -4097.933015 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -45.99443 -41.33453 -39.65522 -38.02437 -36.31516 -35.31841 -33.92210 -33.07381 -32.35886 -32.28735 -30.83764 -28.66111 -27.38275 -26.38175 -25.58766 -24.66749 -23.95568 -22.16264 -21.92709 -21.69220 -20.88571 -20.45706 -18.93192 -18.81498 -18.54688 -17.85446 -17.16060 -16.87620 -16.54066 -16.07025 -15.79665 -15.56826 -15.46919 -15.23764 -15.05820 -14.61757 -14.47051 -14.07533 -14.00599 -13.94982 -13.80006 -13.68519 -13.55019 -13.32842 -12.90590 -12.75540 -12.72007 -12.59155 -12.23767 -12.14908 -12.07049 -12.00852 -11.88088 -11.80528 -11.67928 -11.51768 -11.37406 -11.17191 -11.06183 -10.98577 -10.72074 -10.60801 -9.68347 -8.90086 -7.86494 -5.21562 0.19282 0.72681 1.43366 1.45540 1.50168 1.54391 1.88902 2.25447 2.48198 2.93845 3.27607 3.31170 3.53248 3.61730 3.70131 3.85583 3.90632 3.95136 4.09785 4.14687 4.17314 4.22073 4.24310 4.30263 4.34479 4.43683 4.55496 4.57614 4.62858 4.69479 4.78578 4.80475 4.84831 4.88107 4.91038 4.92678 4.97996 5.00931 5.10450 5.16820 5.17489 5.19264 5.37598 5.42102 5.44296 5.50359 5.57183 5.69113 5.78579 6.19572 6.28723 6.99001 7.09909 7.19348 7.77384 8.42483 9.24096 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016770 B = 0.002469 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.276133 B =11338.459086 C =12061.991535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.053 4.053 3 C 0.052 3.948 4 N -0.373 5.373 5 O 0.104 5.896 6 C 0.021 3.979 7 C -0.270 4.270 8 C 0.592 3.408 9 O -0.575 6.575 10 N -0.595 5.595 11 C 0.091 3.909 12 C -0.129 4.129 13 C -0.111 4.111 14 C -0.074 4.074 15 H 0.057 0.943 16 C -0.075 4.075 17 H 0.083 0.917 18 C -0.118 4.118 19 C 0.182 3.818 20 N -0.630 5.630 21 C -0.244 4.244 22 H 0.077 0.923 23 C -0.067 4.067 24 N -0.951 5.951 25 Si 0.978 3.022 26 H -0.283 1.283 27 H -0.292 1.292 28 H -0.272 1.272 29 C 0.135 3.865 30 C 0.120 3.880 31 H 0.078 0.922 32 H 0.045 0.955 33 H 0.063 0.937 34 H 0.095 0.905 35 H 0.078 0.922 36 H 0.277 0.723 37 H 0.105 0.895 38 H 0.101 0.899 39 H 0.107 0.893 40 H 0.053 0.947 41 H 0.071 0.929 42 H 0.081 0.919 43 H 0.087 0.913 44 H 0.063 0.937 45 H 0.012 0.988 46 H 0.000 1.000 47 H 0.247 0.753 48 H 0.008 0.992 49 H 0.035 0.965 50 H 0.087 0.913 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.114 15.225 -23.627 28.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.091 4.091 3 C -0.110 4.110 4 N -0.078 5.078 5 O 0.043 5.957 6 C -0.060 4.060 7 C -0.277 4.277 8 C 0.381 3.619 9 O -0.456 6.456 10 N -0.326 5.326 11 C -0.030 4.030 12 C -0.167 4.167 13 C -0.149 4.149 14 C -0.093 4.093 15 H 0.075 0.925 16 C -0.095 4.095 17 H 0.101 0.899 18 C -0.156 4.156 19 C 0.057 3.943 20 N -0.356 5.356 21 C -0.373 4.373 22 H 0.095 0.905 23 C -0.260 4.260 24 N -0.600 5.600 25 Si 0.806 3.194 26 H -0.210 1.210 27 H -0.219 1.219 28 H -0.197 1.197 29 C 0.010 3.990 30 C -0.002 4.002 31 H 0.097 0.903 32 H 0.064 0.936 33 H 0.082 0.918 34 H 0.113 0.887 35 H 0.097 0.903 36 H 0.292 0.708 37 H 0.123 0.877 38 H 0.119 0.881 39 H 0.125 0.875 40 H 0.072 0.928 41 H 0.090 0.910 42 H 0.099 0.901 43 H 0.105 0.895 44 H 0.082 0.918 45 H 0.030 0.970 46 H 0.018 0.982 47 H 0.056 0.944 48 H 0.026 0.974 49 H 0.054 0.946 50 H 0.105 0.895 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.225 14.435 -24.552 29.383 hybrid contribution -0.102 -1.452 2.154 2.600 sum 7.123 12.984 -22.397 26.850 Atomic orbital electron populations 1.21656 0.92780 1.03345 1.01853 1.20061 0.97312 0.87532 1.04242 1.25001 1.00072 0.99194 0.86708 1.73663 1.17146 0.93312 1.23712 1.84554 1.61455 1.25790 1.23860 1.27182 0.96390 0.99681 0.82751 1.22141 1.14663 0.96606 0.94337 1.17215 0.77743 0.82878 0.84108 1.90817 1.49688 1.26925 1.78129 1.48054 1.56025 1.18659 1.09837 1.22371 0.95762 0.83212 1.01681 1.21899 0.95439 1.03670 0.95684 1.21578 1.02404 0.94338 0.96553 1.21317 0.95066 0.99233 0.93725 0.92474 1.22189 0.96105 0.95738 0.95454 0.89858 1.22725 0.96032 0.99915 0.96948 1.20980 0.87973 0.90982 0.94353 1.44893 1.23278 1.44916 1.22537 1.19449 1.04854 1.13530 0.99491 0.90490 1.25651 0.97198 1.02195 1.00918 1.70192 1.14118 1.44778 1.30927 0.85086 0.76723 0.78617 0.78971 1.20956 1.21864 1.19689 1.21751 0.94446 0.94972 0.87807 1.21630 0.96368 1.01688 0.80497 0.90288 0.93585 0.91779 0.88651 0.90304 0.70811 0.87654 0.88065 0.87516 0.92850 0.91044 0.90063 0.89472 0.91787 0.96999 0.98207 0.94382 0.97383 0.94644 0.89534 0.91777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 9.89 71.98 0.71 -1.76 16 2 C -0.05 -1.08 6.54 29.85 0.20 -0.88 16 3 C 0.05 1.10 6.84 45.16 0.31 1.41 16 4 N -0.37 -7.42 12.01 -44.78 -0.54 -7.96 16 5 O 0.10 1.49 11.06 76.97 0.85 2.34 16 6 C 0.02 0.21 10.03 67.61 0.68 0.89 16 7 C -0.27 -5.07 5.53 -18.74 -0.10 -5.17 16 8 C 0.59 14.44 7.66 86.65 0.66 15.11 16 9 O -0.58 -19.77 16.30 -4.07 -0.07 -19.83 16 10 N -0.59 -11.39 2.97 -822.83 -2.45 -13.84 16 11 C 0.09 0.86 5.97 86.36 0.52 1.38 16 12 C -0.13 -1.39 6.08 30.67 0.19 -1.21 16 13 C -0.11 -1.74 5.04 30.62 0.15 -1.59 16 14 C -0.07 -1.74 1.85 -10.72 -0.02 -1.76 16 15 H 0.06 1.56 8.11 -2.39 -0.02 1.54 16 16 C -0.08 -2.37 2.56 -9.40 -0.02 -2.40 16 17 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 18 C -0.12 -4.14 5.58 31.78 0.18 -3.96 16 19 C 0.18 9.18 5.38 86.68 0.47 9.65 16 20 N -0.63 -33.81 3.40 -691.27 -2.35 -36.16 16 21 C -0.24 -14.35 10.28 84.03 0.86 -13.48 16 22 H 0.08 4.38 7.83 -2.91 -0.02 4.36 16 23 C -0.07 -3.94 5.49 84.86 0.47 -3.47 16 24 N -0.95 -58.75 10.33 21.65 0.22 -58.53 16 25 Si 0.98 47.26 29.55 68.60 2.03 49.29 16 26 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 27 H -0.29 -14.08 7.11 99.48 0.71 -13.38 16 28 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 29 C 0.14 5.75 5.73 86.86 0.50 6.24 16 30 C 0.12 2.85 5.39 86.36 0.47 3.31 16 31 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.08 1.89 7.90 -2.39 -0.02 1.87 16 36 H 0.28 -0.41 7.56 -2.91 -0.02 -0.43 16 37 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 38 H 0.10 0.60 4.47 -2.39 -0.01 0.59 16 39 H 0.11 0.60 8.14 -2.38 -0.02 0.58 16 40 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.07 1.17 7.46 -2.39 -0.02 1.15 16 42 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.09 2.58 8.11 -2.39 -0.02 2.56 16 44 H 0.06 2.14 8.01 -2.38 -0.02 2.12 16 45 H 0.01 0.66 7.39 -2.39 -0.02 0.64 16 46 H 0.00 -0.02 7.52 -2.39 -0.02 -0.04 16 47 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 48 H 0.01 0.37 8.04 -2.39 -0.02 0.35 16 49 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 50 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 51 H 0.06 1.99 6.45 -2.39 -0.02 1.97 16 Total: -1.00 -81.00 399.52 4.82 -76.18 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: 0.92 Total: 6.22 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: 6.20 Total: 2.29 kcal Atomic # 7 Polarization: -111.38 SS G_CDS: -5.11 Total: -116.49 kcal Atomic # 8 Polarization: -18.28 SS G_CDS: 0.79 Total: -17.49 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 2.03 Total: 49.29 kcal Total: -81.00 4.82 -76.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961219737.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.254 kcal (2) G-P(sol) polarization free energy of solvation -81.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds