Wall clock time and date at job start Wed Apr 1 2020 05:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50699 * 109.46767 * 2 1 4 4 N 1.30019 * 127.33252 * 269.99858 * 3 2 1 5 5 O 1.20658 * 112.30394 * 179.97438 * 4 3 2 6 6 C 1.33496 * 113.15271 * 359.75607 * 5 4 3 7 7 C 1.37363 * 106.34264 * 0.38947 * 6 5 4 8 8 C 1.47398 * 128.56290 * 179.91361 * 7 6 5 9 9 O 1.21618 * 119.99560 * 227.87368 * 8 7 6 10 10 N 1.34773 * 120.00579 * 47.87522 * 8 7 6 11 11 C 1.46928 * 120.62432 * 355.68044 * 10 8 7 12 12 C 1.53194 * 108.77032 * 126.41702 * 11 10 8 13 13 C 1.53042 * 109.31311 * 54.63391 * 12 11 10 14 14 C 1.53039 * 109.53893 * 298.63407 * 13 12 11 15 15 H 1.08995 * 109.49956 * 301.41170 * 14 13 12 16 16 C 1.53003 * 109.49706 * 181.34667 * 14 13 12 17 17 H 1.08999 * 110.88509 * 300.76656 * 16 14 13 18 18 C 1.55158 * 111.00465 * 176.88757 * 16 14 13 19 19 C 1.54366 * 102.92119 * 206.45651 * 18 16 14 20 20 N 1.47025 * 107.28910 * 22.13265 * 19 18 16 21 21 C 1.36939 * 125.64733 * 181.05900 * 20 19 18 22 22 H 1.07995 * 119.99675 * 180.02562 * 21 20 19 23 23 C 1.38810 * 120.00062 * 0.04222 * 21 20 19 24 24 N 1.31621 * 120.00070 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 119.99878 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47408 * 0.02562 * 25 23 21 27 27 H 1.48506 * 109.47231 * 120.00154 * 25 23 21 28 28 H 1.48502 * 109.47059 * 239.99777 * 25 23 21 29 29 C 1.47426 * 108.70475 * 1.09834 * 20 19 18 30 30 C 1.46923 * 120.63339 * 175.71231 * 10 8 7 31 31 H 1.08993 * 109.47364 * 60.00652 * 1 2 3 32 32 H 1.08999 * 109.46728 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47364 * 300.00085 * 1 2 3 34 34 H 1.09000 * 109.46845 * 239.99991 * 2 1 3 35 35 H 1.09000 * 109.47190 * 119.99698 * 2 1 3 36 36 H 1.07997 * 126.83106 * 180.29940 * 6 5 4 37 37 H 1.08995 * 109.58814 * 6.63544 * 11 10 8 38 38 H 1.08995 * 109.70692 * 246.26742 * 11 10 8 39 39 H 1.08997 * 109.50286 * 294.68386 * 12 11 10 40 40 H 1.09001 * 109.52460 * 174.60217 * 12 11 10 41 41 H 1.09004 * 109.46214 * 178.61000 * 13 12 11 42 42 H 1.09003 * 109.44876 * 58.65321 * 13 12 11 43 43 H 1.09006 * 110.71748 * 324.78594 * 18 16 14 44 44 H 1.08993 * 110.72302 * 88.06006 * 18 16 14 45 45 H 1.09004 * 109.84401 * 262.73221 * 19 18 16 46 46 H 1.09000 * 110.03378 * 141.64656 * 19 18 16 47 47 H 0.96996 * 119.99887 * 180.02562 * 24 23 21 48 48 H 1.08999 * 110.36611 * 217.03337 * 29 20 19 49 49 H 1.08999 * 110.36681 * 94.70566 * 29 20 19 50 50 H 1.09001 * 109.59108 * 113.79639 * 30 10 8 51 51 H 1.08994 * 109.58688 * 353.36676 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2951 2.1642 -1.0338 5 8 2.6830 3.2631 -0.7210 6 6 2.7405 3.4429 0.6006 7 6 2.3290 2.2622 1.1695 8 6 2.2084 1.9241 2.5991 9 8 2.6720 0.8809 3.0184 10 7 1.5844 2.7710 3.4417 11 6 1.1027 4.0765 2.9700 12 6 -0.3821 4.2107 3.3224 13 6 -0.5693 3.9763 4.8231 14 6 -0.1143 2.5595 5.1806 15 1 -0.6914 1.8359 4.6050 16 6 -0.3332 2.3147 6.6749 17 1 0.2252 3.0352 7.2726 18 6 0.0445 0.8602 7.0613 19 6 -0.8326 0.5943 8.3035 20 7 -1.9611 1.5352 8.2511 21 6 -2.9590 1.6373 9.1834 22 1 -3.7473 2.3639 9.0531 23 6 -2.9570 0.8072 10.2959 24 7 -1.9958 -0.0777 10.4551 25 14 -4.3186 0.9461 11.5672 26 1 -5.2712 2.0093 11.1582 27 1 -5.0369 -0.3499 11.6668 28 1 -3.7305 1.2887 12.8871 29 6 -1.8410 2.3499 7.0283 30 6 1.3736 2.4066 4.8493 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 3.0505 4.3380 1.1193 37 1 1.2294 4.1441 1.8895 38 1 1.6667 4.8733 3.4547 39 1 -0.9568 3.4716 2.7643 40 1 -0.7287 5.2114 3.0644 41 1 -1.6217 4.0956 5.0808 42 1 0.0252 4.7002 5.3805 43 1 -0.2077 0.1696 6.2565 44 1 1.1025 0.7904 7.3134 45 1 -0.2512 0.7629 9.2100 46 1 -1.2034 -0.4306 8.2863 47 1 -1.9946 -0.6580 11.2323 48 1 -2.1615 3.3736 7.2216 49 1 -2.4300 1.9129 6.2219 50 1 1.9601 3.0658 5.4893 51 1 1.6790 1.3725 5.0087 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961219739.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:52:13 Heat of formation + Delta-G solvation = 41.447119 kcal Electronic energy + Delta-G solvation = -31501.979764 eV Core-core repulsion = 27404.930266 eV Total energy + Delta-G solvation = -4097.049498 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -45.27612 -40.42914 -38.35410 -36.76613 -35.57517 -33.95472 -32.59099 -32.29760 -31.56072 -31.05116 -28.94305 -27.45260 -26.20249 -25.05270 -24.53199 -23.72826 -22.94636 -21.23187 -21.17631 -19.86582 -19.64882 -19.53068 -18.12471 -17.85886 -17.09907 -16.77786 -16.31855 -15.64706 -15.06010 -14.94751 -14.61132 -14.53883 -14.42473 -14.06197 -13.88541 -13.75706 -13.52985 -13.14082 -13.12154 -12.93201 -12.32501 -12.23178 -12.12889 -11.93720 -11.87637 -11.79475 -11.32392 -11.24795 -11.08444 -11.06379 -10.86307 -10.81340 -10.64413 -10.41019 -10.26211 -10.07222 -9.97957 -9.94526 -9.78925 -9.67415 -9.59108 -8.82920 -8.57396 -6.79141 -5.68338 -3.01639 0.81260 1.49196 2.31875 2.63347 2.89599 3.40607 3.45813 3.48514 3.65542 3.93480 4.26552 4.47084 4.52273 4.56636 4.71222 4.75631 4.83474 4.90069 4.94606 4.99467 5.05753 5.08717 5.16759 5.35916 5.48596 5.50882 5.52525 5.53253 5.58825 5.61773 5.69315 5.73641 5.75379 5.89497 5.90569 5.94835 5.98144 6.03671 6.21539 6.25611 6.37973 6.44328 6.59160 6.61816 6.76807 6.99730 7.09082 7.60156 7.68852 7.82600 7.86988 7.87135 8.29880 9.25436 9.86148 10.52774 11.43336 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020678 B = 0.002294 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.780972 B =12200.870315 C =12589.660026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.052 4.052 3 C 0.068 3.932 4 N -0.355 5.355 5 O 0.098 5.902 6 C -0.018 4.018 7 C -0.240 4.240 8 C 0.594 3.406 9 O -0.523 6.523 10 N -0.600 5.600 11 C 0.096 3.904 12 C -0.134 4.134 13 C -0.116 4.116 14 C -0.086 4.086 15 H 0.074 0.926 16 C -0.095 4.095 17 H 0.074 0.926 18 C -0.140 4.140 19 C 0.177 3.823 20 N -0.607 5.607 21 C -0.226 4.226 22 H 0.077 0.923 23 C -0.010 4.010 24 N -0.921 5.921 25 Si 0.910 3.090 26 H -0.280 1.280 27 H -0.291 1.291 28 H -0.291 1.291 29 C 0.145 3.855 30 C 0.119 3.881 31 H 0.057 0.943 32 H 0.070 0.930 33 H 0.058 0.942 34 H 0.086 0.914 35 H 0.098 0.902 36 H 0.226 0.774 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.066 0.934 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.065 0.935 43 H 0.055 0.945 44 H 0.058 0.942 45 H 0.044 0.956 46 H 0.040 0.960 47 H 0.251 0.749 48 H 0.036 0.964 49 H 0.016 0.984 50 H 0.071 0.929 51 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.483 9.677 -21.873 25.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.090 4.090 3 C -0.094 4.094 4 N -0.061 5.061 5 O 0.037 5.963 6 C -0.100 4.100 7 C -0.247 4.247 8 C 0.381 3.619 9 O -0.400 6.400 10 N -0.333 5.333 11 C -0.026 4.026 12 C -0.172 4.172 13 C -0.154 4.154 14 C -0.106 4.106 15 H 0.092 0.908 16 C -0.115 4.115 17 H 0.093 0.907 18 C -0.179 4.179 19 C 0.053 3.947 20 N -0.333 5.333 21 C -0.355 4.355 22 H 0.095 0.905 23 C -0.206 4.206 24 N -0.569 5.569 25 Si 0.741 3.259 26 H -0.206 1.206 27 H -0.218 1.218 28 H -0.218 1.218 29 C 0.019 3.981 30 C -0.002 4.002 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.077 0.923 34 H 0.104 0.896 35 H 0.116 0.884 36 H 0.243 0.757 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.094 0.906 41 H 0.092 0.908 42 H 0.083 0.917 43 H 0.074 0.926 44 H 0.077 0.923 45 H 0.062 0.938 46 H 0.059 0.941 47 H 0.061 0.939 48 H 0.054 0.946 49 H 0.033 0.967 50 H 0.089 0.911 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 9.615 8.846 -22.752 26.236 hybrid contribution -0.708 0.142 1.630 1.783 sum 8.906 8.989 -21.121 24.622 Atomic orbital electron populations 1.21714 0.93426 1.02874 1.02319 1.20084 0.96734 0.87406 1.04769 1.24844 0.99609 0.98810 0.86134 1.73660 1.16345 0.92613 1.23498 1.84575 1.62118 1.26628 1.22971 1.26388 1.00057 0.99685 0.83894 1.22326 1.11715 0.94971 0.95717 1.16912 0.78333 0.83515 0.83173 1.90836 1.47358 1.24611 1.77150 1.48005 1.56897 1.17522 1.10872 1.22008 0.95892 0.84583 1.00156 1.21917 0.95129 1.02357 0.97815 1.21610 1.02508 0.96752 0.94523 1.21475 0.94828 0.97215 0.97095 0.90786 1.22315 0.98690 0.97863 0.92615 0.90716 1.22937 0.99731 0.95109 1.00102 1.21135 0.87258 0.93728 0.92625 1.44504 1.27225 1.39932 1.21679 1.19094 1.01377 1.15978 0.99035 0.90504 1.24808 0.98603 0.98566 0.98633 1.69987 1.33065 1.24311 1.29556 0.86062 0.81096 0.77237 0.81478 1.20552 1.21796 1.21790 1.21512 0.92223 0.94650 0.89709 1.21811 0.96604 1.02969 0.78856 0.92428 0.91137 0.92270 0.89572 0.88370 0.75733 0.89974 0.90717 0.91495 0.90605 0.90840 0.91654 0.92576 0.92311 0.93757 0.94135 0.93857 0.94612 0.96677 0.91102 0.88434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.90 37.16 0.37 -0.89 16 2 C -0.05 -0.50 6.55 -27.88 -0.18 -0.68 16 3 C 0.07 0.73 6.84 -79.77 -0.55 0.18 16 4 N -0.36 -3.79 12.01 34.78 0.42 -3.37 16 5 O 0.10 0.84 11.06 18.64 0.21 1.05 16 6 C -0.02 -0.12 10.02 30.41 0.30 0.18 16 7 C -0.24 -2.41 5.53 -102.89 -0.57 -2.98 16 8 C 0.59 7.22 7.66 -12.53 -0.10 7.12 16 9 O -0.52 -8.32 16.29 5.26 0.09 -8.23 16 10 N -0.60 -6.23 2.97 -174.05 -0.52 -6.75 16 11 C 0.10 0.68 5.96 -3.71 -0.02 0.66 16 12 C -0.13 -1.06 6.08 -26.61 -0.16 -1.22 16 13 C -0.12 -1.19 5.02 -26.69 -0.13 -1.32 16 14 C -0.09 -1.09 1.84 -90.50 -0.17 -1.25 16 15 H 0.07 1.03 8.13 -51.93 -0.42 0.61 16 16 C -0.09 -1.54 2.56 -88.47 -0.23 -1.77 16 17 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 18 C -0.14 -2.60 5.56 -24.87 -0.14 -2.74 16 19 C 0.18 4.35 5.38 -3.04 -0.02 4.33 16 20 N -0.61 -15.55 3.39 -170.04 -0.58 -16.12 16 21 C -0.23 -6.35 10.28 -15.06 -0.15 -6.50 16 22 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 23 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 24 N -0.92 -27.41 10.31 55.49 0.57 -26.84 16 25 Si 0.91 22.23 29.55 -169.99 -5.02 17.21 16 26 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 27 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 28 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 29 C 0.15 2.91 5.80 -2.53 -0.01 2.89 16 30 C 0.12 1.41 5.42 -3.71 -0.02 1.39 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.10 1.04 7.89 -51.93 -0.41 0.63 16 36 H 0.23 0.53 7.56 -52.49 -0.40 0.13 16 37 H 0.08 0.46 4.48 -51.93 -0.23 0.23 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.07 0.82 7.32 -51.93 -0.38 0.44 16 42 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.06 1.01 8.04 -51.93 -0.42 0.60 16 44 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 45 H 0.04 1.20 7.38 -51.93 -0.38 0.82 16 46 H 0.04 1.11 7.50 -51.93 -0.39 0.72 16 47 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 48 H 0.04 0.69 8.03 -51.93 -0.42 0.28 16 49 H 0.02 0.31 8.03 -51.93 -0.42 -0.11 16 50 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 51 H 0.10 1.37 6.50 -51.93 -0.34 1.03 16 LS Contribution 399.34 15.07 6.02 6.02 Total: -1.00 -33.93 399.34 -9.09 -43.01 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -8.40 Total: -3.02 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: -1.87 Total: -2.97 kcal Atomic # 7 Polarization: -52.97 SS G_CDS: -0.10 Total: -53.07 kcal Atomic # 8 Polarization: -7.47 SS G_CDS: 0.29 Total: -7.18 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.93 -9.09 -43.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961219739.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.461 kcal (2) G-P(sol) polarization free energy of solvation -33.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds