Wall clock time and date at job start Wed Apr 1 2020 05:52:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 C 1.50699 * 109.46767 * 2 1
4 4 N 1.30019 * 127.33252 * 269.99858 * 3 2 1
5 5 O 1.20658 * 112.30394 * 179.97438 * 4 3 2
6 6 C 1.33496 * 113.15271 * 359.75607 * 5 4 3
7 7 C 1.37363 * 106.34264 * 0.38947 * 6 5 4
8 8 C 1.47398 * 128.56290 * 179.91361 * 7 6 5
9 9 O 1.21618 * 119.99560 * 227.87368 * 8 7 6
10 10 N 1.34773 * 120.00579 * 47.87522 * 8 7 6
11 11 C 1.46928 * 120.62432 * 355.68044 * 10 8 7
12 12 C 1.53194 * 108.77032 * 126.41702 * 11 10 8
13 13 C 1.53042 * 109.31311 * 54.63391 * 12 11 10
14 14 C 1.53039 * 109.53893 * 298.63407 * 13 12 11
15 15 H 1.08995 * 109.49956 * 301.41170 * 14 13 12
16 16 C 1.53003 * 109.49706 * 181.34667 * 14 13 12
17 17 H 1.08999 * 110.88509 * 300.76656 * 16 14 13
18 18 C 1.55158 * 111.00465 * 176.88757 * 16 14 13
19 19 C 1.54366 * 102.92119 * 206.45651 * 18 16 14
20 20 N 1.47025 * 107.28910 * 22.13265 * 19 18 16
21 21 C 1.36939 * 125.64733 * 181.05900 * 20 19 18
22 22 H 1.07995 * 119.99675 * 180.02562 * 21 20 19
23 23 C 1.38810 * 120.00062 * 0.04222 * 21 20 19
24 24 N 1.31621 * 120.00070 * 0.02562 * 23 21 20
25 25 Si 1.86802 * 119.99878 * 180.02562 * 23 21 20
26 26 H 1.48496 * 109.47408 * 0.02562 * 25 23 21
27 27 H 1.48506 * 109.47231 * 120.00154 * 25 23 21
28 28 H 1.48502 * 109.47059 * 239.99777 * 25 23 21
29 29 C 1.47426 * 108.70475 * 1.09834 * 20 19 18
30 30 C 1.46923 * 120.63339 * 175.71231 * 10 8 7
31 31 H 1.08993 * 109.47364 * 60.00652 * 1 2 3
32 32 H 1.08999 * 109.46728 * 180.02562 * 1 2 3
33 33 H 1.08999 * 109.47364 * 300.00085 * 1 2 3
34 34 H 1.09000 * 109.46845 * 239.99991 * 2 1 3
35 35 H 1.09000 * 109.47190 * 119.99698 * 2 1 3
36 36 H 1.07997 * 126.83106 * 180.29940 * 6 5 4
37 37 H 1.08995 * 109.58814 * 6.63544 * 11 10 8
38 38 H 1.08995 * 109.70692 * 246.26742 * 11 10 8
39 39 H 1.08997 * 109.50286 * 294.68386 * 12 11 10
40 40 H 1.09001 * 109.52460 * 174.60217 * 12 11 10
41 41 H 1.09004 * 109.46214 * 178.61000 * 13 12 11
42 42 H 1.09003 * 109.44876 * 58.65321 * 13 12 11
43 43 H 1.09006 * 110.71748 * 324.78594 * 18 16 14
44 44 H 1.08993 * 110.72302 * 88.06006 * 18 16 14
45 45 H 1.09004 * 109.84401 * 262.73221 * 19 18 16
46 46 H 1.09000 * 110.03378 * 141.64656 * 19 18 16
47 47 H 0.96996 * 119.99887 * 180.02562 * 24 23 21
48 48 H 1.08999 * 110.36611 * 217.03337 * 29 20 19
49 49 H 1.08999 * 110.36681 * 94.70566 * 29 20 19
50 50 H 1.09001 * 109.59108 * 113.79639 * 30 10 8
51 51 H 1.08994 * 109.58688 * 353.36676 * 30 10 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0323 1.4208 0.0000
4 7 2.2951 2.1642 -1.0338
5 8 2.6830 3.2631 -0.7210
6 6 2.7405 3.4429 0.6006
7 6 2.3290 2.2622 1.1695
8 6 2.2084 1.9241 2.5991
9 8 2.6720 0.8809 3.0184
10 7 1.5844 2.7710 3.4417
11 6 1.1027 4.0765 2.9700
12 6 -0.3821 4.2107 3.3224
13 6 -0.5693 3.9763 4.8231
14 6 -0.1143 2.5595 5.1806
15 1 -0.6914 1.8359 4.6050
16 6 -0.3332 2.3147 6.6749
17 1 0.2252 3.0352 7.2726
18 6 0.0445 0.8602 7.0613
19 6 -0.8326 0.5943 8.3035
20 7 -1.9611 1.5352 8.2511
21 6 -2.9590 1.6373 9.1834
22 1 -3.7473 2.3639 9.0531
23 6 -2.9570 0.8072 10.2959
24 7 -1.9958 -0.0777 10.4551
25 14 -4.3186 0.9461 11.5672
26 1 -5.2712 2.0093 11.1582
27 1 -5.0369 -0.3499 11.6668
28 1 -3.7305 1.2887 12.8871
29 6 -1.8410 2.3499 7.0283
30 6 1.3736 2.4066 4.8493
31 1 -0.3634 0.5137 -0.8900
32 1 -0.3633 -1.0277 0.0005
33 1 -0.3634 0.5138 0.8900
34 1 1.8933 -0.5138 -0.8900
35 1 1.8934 -0.5138 0.8900
36 1 3.0505 4.3380 1.1193
37 1 1.2294 4.1441 1.8895
38 1 1.6667 4.8733 3.4547
39 1 -0.9568 3.4716 2.7643
40 1 -0.7287 5.2114 3.0644
41 1 -1.6217 4.0956 5.0808
42 1 0.0252 4.7002 5.3805
43 1 -0.2077 0.1696 6.2565
44 1 1.1025 0.7904 7.3134
45 1 -0.2512 0.7629 9.2100
46 1 -1.2034 -0.4306 8.2863
47 1 -1.9946 -0.6580 11.2323
48 1 -2.1615 3.3736 7.2216
49 1 -2.4300 1.9129 6.2219
50 1 1.9601 3.0658 5.4893
51 1 1.6790 1.3725 5.0087
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000961219739.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:52:13
Heat of formation + Delta-G solvation = 41.447119 kcal
Electronic energy + Delta-G solvation = -31501.979764 eV
Core-core repulsion = 27404.930266 eV
Total energy + Delta-G solvation = -4097.049498 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.95 seconds
Orbital eigenvalues (eV)
-45.27612 -40.42914 -38.35410 -36.76613 -35.57517 -33.95472 -32.59099 -32.29760
-31.56072 -31.05116 -28.94305 -27.45260 -26.20249 -25.05270 -24.53199 -23.72826
-22.94636 -21.23187 -21.17631 -19.86582 -19.64882 -19.53068 -18.12471 -17.85886
-17.09907 -16.77786 -16.31855 -15.64706 -15.06010 -14.94751 -14.61132 -14.53883
-14.42473 -14.06197 -13.88541 -13.75706 -13.52985 -13.14082 -13.12154 -12.93201
-12.32501 -12.23178 -12.12889 -11.93720 -11.87637 -11.79475 -11.32392 -11.24795
-11.08444 -11.06379 -10.86307 -10.81340 -10.64413 -10.41019 -10.26211 -10.07222
-9.97957 -9.94526 -9.78925 -9.67415 -9.59108 -8.82920 -8.57396 -6.79141
-5.68338 -3.01639 0.81260 1.49196 2.31875 2.63347 2.89599 3.40607
3.45813 3.48514 3.65542 3.93480 4.26552 4.47084 4.52273 4.56636
4.71222 4.75631 4.83474 4.90069 4.94606 4.99467 5.05753 5.08717
5.16759 5.35916 5.48596 5.50882 5.52525 5.53253 5.58825 5.61773
5.69315 5.73641 5.75379 5.89497 5.90569 5.94835 5.98144 6.03671
6.21539 6.25611 6.37973 6.44328 6.59160 6.61816 6.76807 6.99730
7.09082 7.60156 7.68852 7.82600 7.86988 7.87135 8.29880 9.25436
9.86148 10.52774 11.43336
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.020678 B = 0.002294 C = 0.002224
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1353.780972 B =12200.870315 C =12589.660026
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C -0.052 4.052
3 C 0.068 3.932
4 N -0.355 5.355
5 O 0.098 5.902
6 C -0.018 4.018
7 C -0.240 4.240
8 C 0.594 3.406
9 O -0.523 6.523
10 N -0.600 5.600
11 C 0.096 3.904
12 C -0.134 4.134
13 C -0.116 4.116
14 C -0.086 4.086
15 H 0.074 0.926
16 C -0.095 4.095
17 H 0.074 0.926
18 C -0.140 4.140
19 C 0.177 3.823
20 N -0.607 5.607
21 C -0.226 4.226
22 H 0.077 0.923
23 C -0.010 4.010
24 N -0.921 5.921
25 Si 0.910 3.090
26 H -0.280 1.280
27 H -0.291 1.291
28 H -0.291 1.291
29 C 0.145 3.855
30 C 0.119 3.881
31 H 0.057 0.943
32 H 0.070 0.930
33 H 0.058 0.942
34 H 0.086 0.914
35 H 0.098 0.902
36 H 0.226 0.774
37 H 0.082 0.918
38 H 0.075 0.925
39 H 0.066 0.934
40 H 0.075 0.925
41 H 0.073 0.927
42 H 0.065 0.935
43 H 0.055 0.945
44 H 0.058 0.942
45 H 0.044 0.956
46 H 0.040 0.960
47 H 0.251 0.749
48 H 0.036 0.964
49 H 0.016 0.984
50 H 0.071 0.929
51 H 0.097 0.903
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.483 9.677 -21.873 25.729
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C -0.090 4.090
3 C -0.094 4.094
4 N -0.061 5.061
5 O 0.037 5.963
6 C -0.100 4.100
7 C -0.247 4.247
8 C 0.381 3.619
9 O -0.400 6.400
10 N -0.333 5.333
11 C -0.026 4.026
12 C -0.172 4.172
13 C -0.154 4.154
14 C -0.106 4.106
15 H 0.092 0.908
16 C -0.115 4.115
17 H 0.093 0.907
18 C -0.179 4.179
19 C 0.053 3.947
20 N -0.333 5.333
21 C -0.355 4.355
22 H 0.095 0.905
23 C -0.206 4.206
24 N -0.569 5.569
25 Si 0.741 3.259
26 H -0.206 1.206
27 H -0.218 1.218
28 H -0.218 1.218
29 C 0.019 3.981
30 C -0.002 4.002
31 H 0.076 0.924
32 H 0.089 0.911
33 H 0.077 0.923
34 H 0.104 0.896
35 H 0.116 0.884
36 H 0.243 0.757
37 H 0.100 0.900
38 H 0.093 0.907
39 H 0.085 0.915
40 H 0.094 0.906
41 H 0.092 0.908
42 H 0.083 0.917
43 H 0.074 0.926
44 H 0.077 0.923
45 H 0.062 0.938
46 H 0.059 0.941
47 H 0.061 0.939
48 H 0.054 0.946
49 H 0.033 0.967
50 H 0.089 0.911
51 H 0.116 0.884
Dipole moment (debyes) X Y Z Total
from point charges 9.615 8.846 -22.752 26.236
hybrid contribution -0.708 0.142 1.630 1.783
sum 8.906 8.989 -21.121 24.622
Atomic orbital electron populations
1.21714 0.93426 1.02874 1.02319 1.20084 0.96734 0.87406 1.04769
1.24844 0.99609 0.98810 0.86134 1.73660 1.16345 0.92613 1.23498
1.84575 1.62118 1.26628 1.22971 1.26388 1.00057 0.99685 0.83894
1.22326 1.11715 0.94971 0.95717 1.16912 0.78333 0.83515 0.83173
1.90836 1.47358 1.24611 1.77150 1.48005 1.56897 1.17522 1.10872
1.22008 0.95892 0.84583 1.00156 1.21917 0.95129 1.02357 0.97815
1.21610 1.02508 0.96752 0.94523 1.21475 0.94828 0.97215 0.97095
0.90786 1.22315 0.98690 0.97863 0.92615 0.90716 1.22937 0.99731
0.95109 1.00102 1.21135 0.87258 0.93728 0.92625 1.44504 1.27225
1.39932 1.21679 1.19094 1.01377 1.15978 0.99035 0.90504 1.24808
0.98603 0.98566 0.98633 1.69987 1.33065 1.24311 1.29556 0.86062
0.81096 0.77237 0.81478 1.20552 1.21796 1.21790 1.21512 0.92223
0.94650 0.89709 1.21811 0.96604 1.02969 0.78856 0.92428 0.91137
0.92270 0.89572 0.88370 0.75733 0.89974 0.90717 0.91495 0.90605
0.90840 0.91654 0.92576 0.92311 0.93757 0.94135 0.93857 0.94612
0.96677 0.91102 0.88434
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.26 9.90 37.16 0.37 -0.89 16
2 C -0.05 -0.50 6.55 -27.88 -0.18 -0.68 16
3 C 0.07 0.73 6.84 -79.77 -0.55 0.18 16
4 N -0.36 -3.79 12.01 34.78 0.42 -3.37 16
5 O 0.10 0.84 11.06 18.64 0.21 1.05 16
6 C -0.02 -0.12 10.02 30.41 0.30 0.18 16
7 C -0.24 -2.41 5.53 -102.89 -0.57 -2.98 16
8 C 0.59 7.22 7.66 -12.53 -0.10 7.12 16
9 O -0.52 -8.32 16.29 5.26 0.09 -8.23 16
10 N -0.60 -6.23 2.97 -174.05 -0.52 -6.75 16
11 C 0.10 0.68 5.96 -3.71 -0.02 0.66 16
12 C -0.13 -1.06 6.08 -26.61 -0.16 -1.22 16
13 C -0.12 -1.19 5.02 -26.69 -0.13 -1.32 16
14 C -0.09 -1.09 1.84 -90.50 -0.17 -1.25 16
15 H 0.07 1.03 8.13 -51.93 -0.42 0.61 16
16 C -0.09 -1.54 2.56 -88.47 -0.23 -1.77 16
17 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16
18 C -0.14 -2.60 5.56 -24.87 -0.14 -2.74 16
19 C 0.18 4.35 5.38 -3.04 -0.02 4.33 16
20 N -0.61 -15.55 3.39 -170.04 -0.58 -16.12 16
21 C -0.23 -6.35 10.28 -15.06 -0.15 -6.50 16
22 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16
23 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16
24 N -0.92 -27.41 10.31 55.49 0.57 -26.84 16
25 Si 0.91 22.23 29.55 -169.99 -5.02 17.21 16
26 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16
27 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16
28 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16
29 C 0.15 2.91 5.80 -2.53 -0.01 2.89 16
30 C 0.12 1.41 5.42 -3.71 -0.02 1.39 16
31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16
32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16
33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16
34 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16
35 H 0.10 1.04 7.89 -51.93 -0.41 0.63 16
36 H 0.23 0.53 7.56 -52.49 -0.40 0.13 16
37 H 0.08 0.46 4.48 -51.93 -0.23 0.23 16
38 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16
39 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16
40 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16
41 H 0.07 0.82 7.32 -51.93 -0.38 0.44 16
42 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16
43 H 0.06 1.01 8.04 -51.93 -0.42 0.60 16
44 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16
45 H 0.04 1.20 7.38 -51.93 -0.38 0.82 16
46 H 0.04 1.11 7.50 -51.93 -0.39 0.72 16
47 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16
48 H 0.04 0.69 8.03 -51.93 -0.42 0.28 16
49 H 0.02 0.31 8.03 -51.93 -0.42 -0.11 16
50 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16
51 H 0.10 1.37 6.50 -51.93 -0.34 1.03 16
LS Contribution 399.34 15.07 6.02 6.02
Total: -1.00 -33.93 399.34 -9.09 -43.01
By element:
Atomic # 1 Polarization: 5.38 SS G_CDS: -8.40 Total: -3.02 kcal
Atomic # 6 Polarization: -1.10 SS G_CDS: -1.87 Total: -2.97 kcal
Atomic # 7 Polarization: -52.97 SS G_CDS: -0.10 Total: -53.07 kcal
Atomic # 8 Polarization: -7.47 SS G_CDS: 0.29 Total: -7.18 kcal
Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal
Total LS contribution 6.02 Total: 6.02 kcal
Total: -33.93 -9.09 -43.01 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000961219739.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 84.461 kcal
(2) G-P(sol) polarization free energy of solvation -33.926 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.536 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.089 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.014 kcal
(6) G-S(sol) free energy of system = (1) + (5) 41.447 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.95 seconds