Wall clock time and date at job start Wed Apr 1 2020 05:52:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50699 * 109.46767 * 2 1 4 4 N 1.30019 * 127.33252 * 269.99858 * 3 2 1 5 5 O 1.20658 * 112.30394 * 179.97438 * 4 3 2 6 6 C 1.33496 * 113.15271 * 359.75607 * 5 4 3 7 7 C 1.37363 * 106.34264 * 0.38947 * 6 5 4 8 8 C 1.47398 * 128.56290 * 179.91361 * 7 6 5 9 9 O 1.21618 * 119.99560 * 227.87368 * 8 7 6 10 10 N 1.34773 * 120.00579 * 47.87522 * 8 7 6 11 11 C 1.46928 * 120.62432 * 355.68044 * 10 8 7 12 12 C 1.53194 * 108.77032 * 126.41702 * 11 10 8 13 13 C 1.53042 * 109.31311 * 54.63391 * 12 11 10 14 14 C 1.53039 * 109.53893 * 298.63407 * 13 12 11 15 15 H 1.08995 * 109.49956 * 301.41170 * 14 13 12 16 16 C 1.53003 * 109.49706 * 181.34667 * 14 13 12 17 17 H 1.08999 * 110.88509 * 300.76656 * 16 14 13 18 18 C 1.55158 * 111.00465 * 176.88757 * 16 14 13 19 19 C 1.54366 * 102.92119 * 206.45651 * 18 16 14 20 20 N 1.47025 * 107.28910 * 22.13265 * 19 18 16 21 21 C 1.36939 * 125.64733 * 181.05900 * 20 19 18 22 22 H 1.07995 * 119.99675 * 180.02562 * 21 20 19 23 23 C 1.38810 * 120.00062 * 0.04222 * 21 20 19 24 24 N 1.31621 * 120.00070 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 119.99878 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47408 * 0.02562 * 25 23 21 27 27 H 1.48506 * 109.47231 * 120.00154 * 25 23 21 28 28 H 1.48502 * 109.47059 * 239.99777 * 25 23 21 29 29 C 1.47426 * 108.70475 * 1.09834 * 20 19 18 30 30 C 1.46923 * 120.63339 * 175.71231 * 10 8 7 31 31 H 1.08993 * 109.47364 * 60.00652 * 1 2 3 32 32 H 1.08999 * 109.46728 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47364 * 300.00085 * 1 2 3 34 34 H 1.09000 * 109.46845 * 239.99991 * 2 1 3 35 35 H 1.09000 * 109.47190 * 119.99698 * 2 1 3 36 36 H 1.07997 * 126.83106 * 180.29940 * 6 5 4 37 37 H 1.08995 * 109.58814 * 6.63544 * 11 10 8 38 38 H 1.08995 * 109.70692 * 246.26742 * 11 10 8 39 39 H 1.08997 * 109.50286 * 294.68386 * 12 11 10 40 40 H 1.09001 * 109.52460 * 174.60217 * 12 11 10 41 41 H 1.09004 * 109.46214 * 178.61000 * 13 12 11 42 42 H 1.09003 * 109.44876 * 58.65321 * 13 12 11 43 43 H 1.09006 * 110.71748 * 324.78594 * 18 16 14 44 44 H 1.08993 * 110.72302 * 88.06006 * 18 16 14 45 45 H 1.09004 * 109.84401 * 262.73221 * 19 18 16 46 46 H 1.09000 * 110.03378 * 141.64656 * 19 18 16 47 47 H 0.96996 * 119.99887 * 180.02562 * 24 23 21 48 48 H 1.08999 * 110.36611 * 217.03337 * 29 20 19 49 49 H 1.08999 * 110.36681 * 94.70566 * 29 20 19 50 50 H 1.09001 * 109.59108 * 113.79639 * 30 10 8 51 51 H 1.08994 * 109.58688 * 353.36676 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2951 2.1642 -1.0338 5 8 2.6830 3.2631 -0.7210 6 6 2.7405 3.4429 0.6006 7 6 2.3290 2.2622 1.1695 8 6 2.2084 1.9241 2.5991 9 8 2.6720 0.8809 3.0184 10 7 1.5844 2.7710 3.4417 11 6 1.1027 4.0765 2.9700 12 6 -0.3821 4.2107 3.3224 13 6 -0.5693 3.9763 4.8231 14 6 -0.1143 2.5595 5.1806 15 1 -0.6914 1.8359 4.6050 16 6 -0.3332 2.3147 6.6749 17 1 0.2252 3.0352 7.2726 18 6 0.0445 0.8602 7.0613 19 6 -0.8326 0.5943 8.3035 20 7 -1.9611 1.5352 8.2511 21 6 -2.9590 1.6373 9.1834 22 1 -3.7473 2.3639 9.0531 23 6 -2.9570 0.8072 10.2959 24 7 -1.9958 -0.0777 10.4551 25 14 -4.3186 0.9461 11.5672 26 1 -5.2712 2.0093 11.1582 27 1 -5.0369 -0.3499 11.6668 28 1 -3.7305 1.2887 12.8871 29 6 -1.8410 2.3499 7.0283 30 6 1.3736 2.4066 4.8493 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 3.0505 4.3380 1.1193 37 1 1.2294 4.1441 1.8895 38 1 1.6667 4.8733 3.4547 39 1 -0.9568 3.4716 2.7643 40 1 -0.7287 5.2114 3.0644 41 1 -1.6217 4.0956 5.0808 42 1 0.0252 4.7002 5.3805 43 1 -0.2077 0.1696 6.2565 44 1 1.1025 0.7904 7.3134 45 1 -0.2512 0.7629 9.2100 46 1 -1.2034 -0.4306 8.2863 47 1 -1.9946 -0.6580 11.2323 48 1 -2.1615 3.3736 7.2216 49 1 -2.4300 1.9129 6.2219 50 1 1.9601 3.0658 5.4893 51 1 1.6790 1.3725 5.0087 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961219739.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:52:12 Heat of formation + Delta-G solvation = 21.196162 kcal Electronic energy + Delta-G solvation = -31502.857911 eV Core-core repulsion = 27404.930266 eV Total energy + Delta-G solvation = -4097.927645 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -45.98982 -41.33230 -39.66222 -38.02621 -36.30939 -35.30776 -33.92976 -33.07225 -32.41605 -32.28431 -30.65779 -28.92931 -27.08620 -26.56102 -25.54505 -24.64833 -23.94200 -22.29512 -21.91566 -21.61044 -20.87458 -20.45544 -18.89778 -18.81616 -18.54731 -17.85189 -17.18679 -16.89762 -16.53820 -16.05205 -15.78912 -15.57133 -15.48237 -15.24120 -15.03382 -14.54383 -14.46583 -14.12124 -13.98529 -13.93950 -13.81238 -13.67713 -13.57312 -13.28926 -12.85801 -12.79134 -12.70378 -12.58385 -12.30489 -12.13689 -12.08993 -11.98861 -11.95270 -11.75388 -11.71121 -11.45433 -11.38770 -11.15891 -11.04567 -10.98144 -10.72135 -10.60258 -9.68491 -8.89288 -7.84763 -5.20554 0.19660 0.73264 1.44812 1.46237 1.50494 1.56639 1.89653 2.25744 2.49547 2.94446 3.28052 3.33410 3.52052 3.62944 3.74636 3.84544 3.88527 3.93951 4.08755 4.14811 4.17727 4.21769 4.23689 4.29477 4.39077 4.43184 4.54260 4.57947 4.61029 4.72406 4.78882 4.79494 4.85083 4.88469 4.90437 4.93882 4.97364 5.01291 5.07185 5.16516 5.18179 5.19093 5.36903 5.42577 5.46099 5.50343 5.57069 5.67420 5.77961 6.20394 6.28684 6.98984 7.10332 7.19819 7.78879 8.43976 9.26077 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020678 B = 0.002294 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.780972 B =12200.870315 C =12589.660026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.053 4.053 3 C 0.052 3.948 4 N -0.373 5.373 5 O 0.103 5.897 6 C 0.021 3.979 7 C -0.270 4.270 8 C 0.594 3.406 9 O -0.574 6.574 10 N -0.595 5.595 11 C 0.092 3.908 12 C -0.129 4.129 13 C -0.114 4.114 14 C -0.074 4.074 15 H 0.056 0.944 16 C -0.075 4.075 17 H 0.083 0.917 18 C -0.127 4.127 19 C 0.185 3.815 20 N -0.630 5.630 21 C -0.239 4.239 22 H 0.084 0.916 23 C -0.072 4.072 24 N -0.954 5.954 25 Si 0.979 3.021 26 H -0.263 1.263 27 H -0.294 1.294 28 H -0.291 1.291 29 C 0.142 3.858 30 C 0.123 3.877 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.045 0.955 34 H 0.095 0.905 35 H 0.080 0.920 36 H 0.276 0.724 37 H 0.101 0.899 38 H 0.106 0.894 39 H 0.052 0.948 40 H 0.104 0.896 41 H 0.063 0.937 42 H 0.081 0.919 43 H 0.057 0.943 44 H 0.076 0.924 45 H 0.010 0.990 46 H -0.002 1.002 47 H 0.245 0.755 48 H 0.047 0.953 49 H 0.016 0.984 50 H 0.088 0.912 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.775 13.268 -23.616 28.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.091 4.091 3 C -0.110 4.110 4 N -0.079 5.079 5 O 0.043 5.957 6 C -0.061 4.061 7 C -0.278 4.278 8 C 0.382 3.618 9 O -0.454 6.454 10 N -0.326 5.326 11 C -0.029 4.029 12 C -0.167 4.167 13 C -0.152 4.152 14 C -0.094 4.094 15 H 0.075 0.925 16 C -0.095 4.095 17 H 0.101 0.899 18 C -0.165 4.165 19 C 0.060 3.940 20 N -0.357 5.357 21 C -0.368 4.368 22 H 0.102 0.898 23 C -0.264 4.264 24 N -0.604 5.604 25 Si 0.808 3.192 26 H -0.187 1.187 27 H -0.222 1.222 28 H -0.218 1.218 29 C 0.017 3.983 30 C 0.001 3.999 31 H 0.081 0.919 32 H 0.098 0.902 33 H 0.064 0.936 34 H 0.113 0.887 35 H 0.099 0.901 36 H 0.292 0.708 37 H 0.119 0.881 38 H 0.124 0.876 39 H 0.071 0.929 40 H 0.123 0.877 41 H 0.082 0.918 42 H 0.099 0.901 43 H 0.076 0.924 44 H 0.095 0.905 45 H 0.028 0.972 46 H 0.016 0.984 47 H 0.055 0.945 48 H 0.065 0.935 49 H 0.033 0.967 50 H 0.106 0.894 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 9.883 12.495 -24.546 29.262 hybrid contribution -0.814 -0.938 2.145 2.479 sum 9.069 11.557 -22.400 26.788 Atomic orbital electron populations 1.21660 0.92860 1.03354 1.01812 1.20064 0.97219 0.87484 1.04318 1.25019 1.00040 0.99225 0.86700 1.73664 1.17172 0.93314 1.23775 1.84555 1.61479 1.25802 1.23891 1.27188 0.96412 0.99710 0.82759 1.22158 1.14640 0.96564 0.94435 1.17175 0.77710 0.82878 0.84022 1.90809 1.49682 1.26768 1.78103 1.48045 1.56100 1.18521 1.09951 1.22342 0.95542 0.83354 1.01683 1.21893 0.95670 1.03570 0.95545 1.21597 1.02057 0.94840 0.96685 1.21301 0.95441 0.98875 0.93755 0.92502 1.22187 0.95776 0.96083 0.95473 0.89884 1.22774 0.99420 0.97075 0.97238 1.20880 0.87530 0.91570 0.94031 1.44858 1.26924 1.40924 1.22959 1.19527 1.02046 1.15702 0.99544 0.89771 1.25707 1.01139 0.98615 1.00952 1.70225 1.34996 1.25239 1.29913 0.84990 0.78430 0.77269 0.78538 1.18680 1.22167 1.21841 1.21703 0.94906 0.94181 0.87511 1.21621 0.95882 1.02043 0.80381 0.91911 0.90235 0.93591 0.88668 0.90107 0.70849 0.88076 0.87581 0.92910 0.87736 0.91807 0.90073 0.92403 0.90536 0.97193 0.98405 0.94537 0.93468 0.96664 0.89361 0.91095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 9.90 71.98 0.71 -1.70 16 2 C -0.05 -1.03 6.55 29.85 0.20 -0.83 16 3 C 0.05 1.07 6.84 45.15 0.31 1.38 16 4 N -0.37 -7.33 12.01 -44.77 -0.54 -7.87 16 5 O 0.10 1.46 11.06 76.96 0.85 2.31 16 6 C 0.02 0.20 10.02 67.61 0.68 0.87 16 7 C -0.27 -4.91 5.53 -18.75 -0.10 -5.01 16 8 C 0.59 13.79 7.66 86.66 0.66 14.46 16 9 O -0.57 -18.64 16.29 -4.09 -0.07 -18.71 16 10 N -0.60 -10.89 2.97 -822.82 -2.45 -13.33 16 11 C 0.09 0.87 5.96 86.36 0.52 1.38 16 12 C -0.13 -1.51 6.08 30.67 0.19 -1.33 16 13 C -0.11 -1.96 5.02 30.62 0.15 -1.81 16 14 C -0.07 -1.74 1.84 -10.71 -0.02 -1.76 16 15 H 0.06 1.56 8.13 -2.39 -0.02 1.54 16 16 C -0.08 -2.38 2.56 -9.40 -0.02 -2.40 16 17 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 18 C -0.13 -4.79 5.56 31.80 0.18 -4.61 16 19 C 0.19 9.53 5.38 86.74 0.47 9.99 16 20 N -0.63 -33.05 3.39 -691.89 -2.35 -35.40 16 21 C -0.24 -13.63 10.28 84.03 0.86 -12.76 16 22 H 0.08 4.54 7.83 -2.91 -0.02 4.52 16 23 C -0.07 -4.17 5.49 84.86 0.47 -3.71 16 24 N -0.95 -59.23 10.31 21.65 0.22 -59.01 16 25 Si 0.98 46.49 29.55 68.60 2.03 48.51 16 26 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 27 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 28 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 29 C 0.14 5.62 5.80 86.86 0.50 6.13 16 30 C 0.12 2.71 5.42 86.36 0.47 3.18 16 31 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.08 1.84 7.89 -2.39 -0.02 1.82 16 36 H 0.28 -0.49 7.56 -2.91 -0.02 -0.51 16 37 H 0.10 0.60 4.48 -2.39 -0.01 0.58 16 38 H 0.11 0.46 8.14 -2.39 -0.02 0.45 16 39 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.06 1.24 7.32 -2.39 -0.02 1.23 16 42 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.06 2.15 8.04 -2.38 -0.02 2.14 16 44 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 45 H 0.01 0.57 7.38 -2.38 -0.02 0.55 16 46 H 0.00 -0.14 7.50 -2.39 -0.02 -0.15 16 47 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 48 H 0.05 1.77 8.03 -2.39 -0.02 1.75 16 49 H 0.02 0.62 8.03 -2.39 -0.02 0.60 16 50 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 51 H 0.07 1.98 6.50 -2.39 -0.02 1.97 16 Total: -1.00 -79.57 399.34 4.83 -74.74 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: 0.92 Total: 7.28 kcal Atomic # 6 Polarization: -4.74 SS G_CDS: 6.21 Total: 1.47 kcal Atomic # 7 Polarization: -110.50 SS G_CDS: -5.11 Total: -115.60 kcal Atomic # 8 Polarization: -17.18 SS G_CDS: 0.78 Total: -16.40 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.51 kcal Total: -79.57 4.83 -74.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961219739.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.941 kcal (2) G-P(sol) polarization free energy of solvation -79.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds