Wall clock time and date at job start Wed Apr 1 2020 06:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50699 * 109.46871 * 2 1 4 4 N 1.33697 * 126.26911 * 269.97299 * 3 2 1 5 5 C 1.30617 * 108.99150 * 180.02562 * 4 3 2 6 6 O 1.33669 * 109.15837 * 359.75240 * 5 4 3 7 7 C 1.35337 * 107.67878 * 0.39990 * 6 5 4 8 8 C 1.46722 * 126.64330 * 179.87500 * 7 6 5 9 9 O 1.21692 * 120.00396 * 172.14313 * 8 7 6 10 10 N 1.34780 * 120.00067 * 352.14765 * 8 7 6 11 11 C 1.46930 * 120.62635 * 352.56970 * 10 8 7 12 12 C 1.53193 * 108.77708 * 233.88760 * 11 10 8 13 13 C 1.53047 * 109.30880 * 305.36452 * 12 11 10 14 14 C 1.53034 * 109.53573 * 61.36807 * 13 12 11 15 15 H 1.08998 * 109.53284 * 58.59830 * 14 13 12 16 16 C 1.53009 * 109.49709 * 178.68095 * 14 13 12 17 17 H 1.09000 * 110.88040 * 55.95323 * 16 14 13 18 18 C 1.55157 * 111.00391 * 179.83570 * 16 14 13 19 19 C 1.54320 * 102.93876 * 153.57889 * 18 16 14 20 20 N 1.47025 * 107.27434 * 337.80513 * 19 18 16 21 21 C 1.36930 * 125.65234 * 178.96324 * 20 19 18 22 22 H 1.07996 * 120.00311 * 187.64831 * 21 20 19 23 23 C 1.38819 * 119.99918 * 7.65236 * 21 20 19 24 24 N 1.31616 * 119.99930 * 8.46088 * 23 21 20 25 25 Si 1.86801 * 120.00016 * 188.46684 * 23 21 20 26 26 H 1.48504 * 109.46990 * 84.97733 * 25 23 21 27 27 H 1.48499 * 109.47081 * 204.97660 * 25 23 21 28 28 H 1.48496 * 109.46887 * 324.98133 * 25 23 21 29 29 C 1.47430 * 108.69881 * 358.94547 * 20 19 18 30 30 C 1.46923 * 120.63470 * 172.85534 * 10 8 7 31 31 H 1.09002 * 109.47665 * 60.00270 * 1 2 3 32 32 H 1.09007 * 109.47257 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47363 * 299.99921 * 1 2 3 34 34 H 1.08995 * 109.47390 * 239.99684 * 2 1 3 35 35 H 1.08997 * 109.47225 * 119.99654 * 2 1 3 36 36 H 1.08006 * 125.42179 * 180.02562 * 5 4 3 37 37 H 1.09004 * 109.58537 * 353.67406 * 11 10 8 38 38 H 1.09000 * 109.58534 * 114.09518 * 11 10 8 39 39 H 1.08993 * 109.49929 * 185.41487 * 12 11 10 40 40 H 1.08997 * 109.52393 * 65.32826 * 12 11 10 41 41 H 1.08996 * 109.46242 * 301.34599 * 13 12 11 42 42 H 1.09001 * 109.44442 * 181.37659 * 13 12 11 43 43 H 1.09004 * 110.71612 * 271.93773 * 18 16 14 44 44 H 1.08998 * 110.72279 * 35.03323 * 18 16 14 45 45 H 1.09000 * 109.88903 * 97.22442 * 19 18 16 46 46 H 1.09006 * 109.88279 * 218.38887 * 19 18 16 47 47 H 0.97006 * 120.00262 * 180.02562 * 24 23 21 48 48 H 1.08999 * 110.36371 * 265.28816 * 29 20 19 49 49 H 1.08995 * 110.36477 * 142.97168 * 29 20 19 50 50 H 1.09004 * 109.58152 * 245.90367 * 30 10 8 51 51 H 1.08997 * 109.58736 * 6.32297 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 7 2.2963 2.1664 -1.0779 5 6 2.7124 3.3422 -0.6900 6 8 2.7216 3.3854 0.6460 7 6 2.3012 2.1814 1.0991 8 6 2.1567 1.7754 2.5016 9 8 1.6331 0.7118 2.7763 10 7 2.6039 2.5804 3.4857 11 6 3.3809 3.7870 3.1708 12 6 4.6944 3.7471 3.9581 13 6 4.3870 3.5681 5.4466 14 6 3.6544 2.2420 5.6620 15 1 4.2718 1.4211 5.2975 16 6 3.3766 2.0485 7.1542 17 1 2.8185 2.8931 7.5582 18 6 2.6294 0.7134 7.4122 19 6 3.0367 0.3635 8.8590 20 7 4.2915 1.0750 9.1435 21 6 4.9744 1.0455 10.3300 22 1 5.8208 1.6986 10.4824 23 6 4.5787 0.1758 11.3372 24 7 3.6585 -0.7340 11.0970 25 14 5.3522 0.2970 13.0332 26 1 4.6350 1.3230 13.8321 27 1 5.2564 -1.0182 13.7160 28 1 6.7800 0.6827 12.8995 29 6 4.6930 1.8251 7.9395 30 6 2.3290 2.2648 4.8941 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.8933 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 2.9988 4.1522 -1.3445 37 1 3.5958 3.8147 2.1025 38 1 2.8117 4.6724 3.4542 39 1 5.2369 4.6805 3.8083 40 1 5.3029 2.9127 3.6094 41 1 3.7585 4.3901 5.7890 42 1 5.3192 3.5639 6.0117 43 1 1.5511 0.8545 7.3386 44 1 2.9645 -0.0567 6.7174 45 1 2.2607 0.6892 9.5518 46 1 3.1911 -0.7116 8.9510 47 1 3.3817 -1.3415 11.8009 48 1 5.3949 1.2405 7.3449 49 1 5.1354 2.7814 8.2184 50 1 1.6740 3.0261 5.3180 51 1 1.8499 1.2882 4.9629 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961235606.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:03:38 Heat of formation + Delta-G solvation = 9.171042 kcal Electronic energy + Delta-G solvation = -31424.842147 eV Core-core repulsion = 27326.393053 eV Total energy + Delta-G solvation = -4098.449094 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.86172 -40.31576 -38.38085 -36.92480 -35.91896 -33.73008 -33.21421 -32.39970 -31.23223 -30.01724 -28.91003 -27.34806 -25.96628 -24.81071 -24.18351 -23.61779 -22.95513 -21.82058 -20.87896 -19.88235 -19.75634 -19.51742 -17.67820 -17.29198 -17.12986 -16.76355 -16.22093 -15.54296 -15.30684 -14.78622 -14.60363 -14.53883 -14.32683 -14.07132 -13.83986 -13.71350 -13.51772 -13.21781 -13.15258 -12.90286 -12.30816 -12.18904 -12.02122 -11.78627 -11.77705 -11.48181 -11.33061 -11.26237 -11.20274 -11.07683 -10.85694 -10.80135 -10.71776 -10.61882 -10.33338 -10.08512 -9.98413 -9.81498 -9.67792 -9.52482 -9.35516 -8.77348 -8.57953 -6.76317 -5.65894 -3.02176 0.48810 2.04561 2.08213 2.71975 2.86758 3.42026 3.46662 3.48746 3.64051 4.18400 4.34279 4.52037 4.57902 4.75881 4.78867 4.86511 4.95126 5.05788 5.11323 5.15799 5.17410 5.25902 5.37634 5.48834 5.49874 5.54659 5.61935 5.65686 5.70317 5.72336 5.74632 5.83094 5.91729 5.94883 5.96477 5.99648 6.03489 6.08224 6.23211 6.27023 6.38759 6.47398 6.60412 6.62111 6.78058 6.99720 7.02215 7.22353 7.53610 7.72793 7.76691 7.87642 8.32352 9.25427 9.87182 10.54474 11.43612 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.021881 B = 0.002260 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.354187 B =12387.096928 C =13363.205873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.051 4.051 3 C 0.082 3.918 4 N -0.490 5.490 5 C 0.191 3.809 6 O -0.186 6.186 7 C -0.107 4.107 8 C 0.604 3.396 9 O -0.509 6.509 10 N -0.599 5.599 11 C 0.096 3.904 12 C -0.133 4.133 13 C -0.116 4.116 14 C -0.087 4.087 15 H 0.075 0.925 16 C -0.095 4.095 17 H 0.074 0.926 18 C -0.139 4.139 19 C 0.171 3.829 20 N -0.605 5.605 21 C -0.229 4.229 22 H 0.076 0.924 23 C -0.009 4.009 24 N -0.919 5.919 25 Si 0.910 3.090 26 H -0.289 1.289 27 H -0.291 1.291 28 H -0.282 1.282 29 C 0.144 3.856 30 C 0.118 3.882 31 H 0.052 0.948 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.081 0.919 35 H 0.098 0.902 36 H 0.254 0.746 37 H 0.098 0.902 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.066 0.934 41 H 0.064 0.936 42 H 0.073 0.927 43 H 0.057 0.943 44 H 0.058 0.942 45 H 0.026 0.974 46 H 0.060 0.940 47 H 0.252 0.748 48 H 0.016 0.984 49 H 0.035 0.965 50 H 0.071 0.929 51 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.147 10.864 -25.078 27.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.089 4.089 3 C -0.041 4.041 4 N -0.219 5.219 5 C -0.034 4.034 6 O -0.073 6.073 7 C -0.162 4.162 8 C 0.391 3.609 9 O -0.386 6.386 10 N -0.331 5.331 11 C -0.026 4.026 12 C -0.172 4.172 13 C -0.154 4.154 14 C -0.107 4.107 15 H 0.094 0.906 16 C -0.115 4.115 17 H 0.092 0.908 18 C -0.177 4.177 19 C 0.046 3.954 20 N -0.331 5.331 21 C -0.357 4.357 22 H 0.094 0.906 23 C -0.206 4.206 24 N -0.566 5.566 25 Si 0.741 3.259 26 H -0.216 1.216 27 H -0.217 1.217 28 H -0.208 1.208 29 C 0.018 3.982 30 C -0.003 4.003 31 H 0.072 0.928 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.099 0.901 35 H 0.117 0.883 36 H 0.270 0.730 37 H 0.115 0.885 38 H 0.090 0.910 39 H 0.094 0.906 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.092 0.908 43 H 0.076 0.924 44 H 0.077 0.923 45 H 0.044 0.956 46 H 0.078 0.922 47 H 0.062 0.938 48 H 0.034 0.966 49 H 0.054 0.946 50 H 0.090 0.910 51 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -3.486 10.049 -25.289 27.434 hybrid contribution 0.611 0.594 1.436 1.670 sum -2.874 10.643 -23.852 26.277 Atomic orbital electron populations 1.21632 0.93625 1.02432 1.02001 1.20146 0.96824 0.87623 1.04315 1.22086 0.97474 0.98259 0.86312 1.70358 1.16773 1.03290 1.31467 1.28426 0.97240 0.97587 0.80135 1.84664 1.64755 1.34036 1.23857 1.22991 1.11807 0.85106 0.96287 1.16475 0.79242 0.83896 0.81306 1.90887 1.44870 1.21479 1.81392 1.48029 1.53201 1.25034 1.06853 1.22162 0.92447 0.86847 1.01143 1.21928 0.96383 1.02562 0.96279 1.21614 1.01328 0.97444 0.95005 1.21475 0.95624 0.98046 0.95507 0.90641 1.22314 0.98784 0.98359 0.92043 0.90762 1.22905 0.98670 0.95981 1.00153 1.21194 0.87466 0.97781 0.88956 1.44488 1.24487 1.55015 1.09094 1.19026 1.10361 1.16853 0.89469 0.90631 1.24820 0.99565 0.97460 0.98711 1.69963 1.33883 1.20826 1.31918 0.86162 0.78578 0.76830 0.84345 1.21623 1.21741 1.20759 1.21517 0.93272 0.94827 0.88564 1.21859 0.97671 1.03138 0.77656 0.92844 0.91579 0.92164 0.90062 0.88336 0.72989 0.88478 0.90988 0.90582 0.91518 0.91693 0.90846 0.92416 0.92316 0.95587 0.92179 0.93791 0.96629 0.94642 0.91034 0.88238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 9.89 37.16 0.37 -0.95 16 2 C -0.05 -0.53 5.85 -27.89 -0.16 -0.69 16 3 C 0.08 0.91 6.41 -82.46 -0.53 0.39 16 4 N -0.49 -4.88 11.26 -10.88 -0.12 -5.01 16 5 C 0.19 1.27 13.21 52.25 0.69 1.96 16 6 O -0.19 -1.59 7.47 4.43 0.03 -1.55 16 7 C -0.11 -1.20 6.79 -36.84 -0.25 -1.45 16 8 C 0.60 7.80 7.65 -12.83 -0.10 7.70 16 9 O -0.51 -7.78 14.33 5.20 0.07 -7.71 16 10 N -0.60 -6.93 2.97 -174.29 -0.52 -7.45 16 11 C 0.10 0.85 6.12 -3.71 -0.02 0.83 16 12 C -0.13 -1.18 6.08 -26.61 -0.16 -1.35 16 13 C -0.12 -1.27 5.05 -26.69 -0.13 -1.40 16 14 C -0.09 -1.15 1.86 -90.50 -0.17 -1.31 16 15 H 0.08 1.11 8.07 -51.93 -0.42 0.69 16 16 C -0.10 -1.57 2.56 -88.47 -0.23 -1.80 16 17 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 18 C -0.14 -2.60 5.40 -24.90 -0.13 -2.73 16 19 C 0.17 4.21 5.45 -3.06 -0.02 4.20 16 20 N -0.60 -15.66 3.39 -170.07 -0.58 -16.24 16 21 C -0.23 -6.47 10.25 -15.06 -0.15 -6.62 16 22 H 0.08 2.06 7.84 -52.49 -0.41 1.65 16 23 C -0.01 -0.26 5.44 -17.43 -0.09 -0.36 16 24 N -0.92 -27.52 10.53 55.49 0.58 -26.94 16 25 Si 0.91 22.37 29.56 -169.99 -5.03 17.34 16 26 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 27 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 28 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 29 C 0.14 2.95 5.95 -2.53 -0.02 2.93 16 30 C 0.12 1.47 5.39 -3.71 -0.02 1.45 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.54 8.14 -51.92 -0.42 0.11 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.10 1.12 6.65 -51.93 -0.35 0.78 16 36 H 0.25 0.28 8.06 -52.48 -0.42 -0.15 16 37 H 0.10 0.80 4.27 -52.64 -0.22 0.57 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.07 0.85 7.46 -51.93 -0.39 0.46 16 43 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 44 H 0.06 1.08 8.04 -51.93 -0.42 0.67 16 45 H 0.03 0.70 8.00 -51.93 -0.42 0.28 16 46 H 0.06 1.67 6.91 -51.93 -0.36 1.31 16 47 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 48 H 0.02 0.33 7.98 -51.93 -0.41 -0.08 16 49 H 0.04 0.70 8.05 -51.93 -0.42 0.28 16 50 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 51 H 0.10 1.41 6.37 -51.93 -0.33 1.08 16 LS Contribution 395.78 15.07 5.96 5.96 Total: -1.00 -33.81 395.78 -9.07 -42.88 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -8.35 Total: -2.09 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: -1.13 Total: 0.80 kcal Atomic # 7 Polarization: -54.99 SS G_CDS: -0.63 Total: -55.63 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: 0.11 Total: -9.26 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.03 Total: 17.34 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.81 -9.07 -42.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961235606.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.049 kcal (2) G-P(sol) polarization free energy of solvation -33.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds