Wall clock time and date at job start Wed Apr 1 2020 06:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50699 * 109.46871 * 2 1 4 4 N 1.33697 * 126.26911 * 269.97299 * 3 2 1 5 5 C 1.30617 * 108.99150 * 180.02562 * 4 3 2 6 6 O 1.33669 * 109.15837 * 359.75240 * 5 4 3 7 7 C 1.35337 * 107.67878 * 0.39990 * 6 5 4 8 8 C 1.46722 * 126.64330 * 179.87500 * 7 6 5 9 9 O 1.21692 * 120.00396 * 172.14313 * 8 7 6 10 10 N 1.34780 * 120.00067 * 352.14765 * 8 7 6 11 11 C 1.46930 * 120.62635 * 352.56970 * 10 8 7 12 12 C 1.53193 * 108.77708 * 233.88760 * 11 10 8 13 13 C 1.53047 * 109.30880 * 305.36452 * 12 11 10 14 14 C 1.53034 * 109.53573 * 61.36807 * 13 12 11 15 15 H 1.08998 * 109.53284 * 58.59830 * 14 13 12 16 16 C 1.53009 * 109.49709 * 178.68095 * 14 13 12 17 17 H 1.09000 * 110.88040 * 55.95323 * 16 14 13 18 18 C 1.55157 * 111.00391 * 179.83570 * 16 14 13 19 19 C 1.54320 * 102.93876 * 153.57889 * 18 16 14 20 20 N 1.47025 * 107.27434 * 337.80513 * 19 18 16 21 21 C 1.36930 * 125.65234 * 178.96324 * 20 19 18 22 22 H 1.07996 * 120.00311 * 187.64831 * 21 20 19 23 23 C 1.38819 * 119.99918 * 7.65236 * 21 20 19 24 24 N 1.31616 * 119.99930 * 8.46088 * 23 21 20 25 25 Si 1.86801 * 120.00016 * 188.46684 * 23 21 20 26 26 H 1.48504 * 109.46990 * 84.97733 * 25 23 21 27 27 H 1.48499 * 109.47081 * 204.97660 * 25 23 21 28 28 H 1.48496 * 109.46887 * 324.98133 * 25 23 21 29 29 C 1.47430 * 108.69881 * 358.94547 * 20 19 18 30 30 C 1.46923 * 120.63470 * 172.85534 * 10 8 7 31 31 H 1.09002 * 109.47665 * 60.00270 * 1 2 3 32 32 H 1.09007 * 109.47257 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47363 * 299.99921 * 1 2 3 34 34 H 1.08995 * 109.47390 * 239.99684 * 2 1 3 35 35 H 1.08997 * 109.47225 * 119.99654 * 2 1 3 36 36 H 1.08006 * 125.42179 * 180.02562 * 5 4 3 37 37 H 1.09004 * 109.58537 * 353.67406 * 11 10 8 38 38 H 1.09000 * 109.58534 * 114.09518 * 11 10 8 39 39 H 1.08993 * 109.49929 * 185.41487 * 12 11 10 40 40 H 1.08997 * 109.52393 * 65.32826 * 12 11 10 41 41 H 1.08996 * 109.46242 * 301.34599 * 13 12 11 42 42 H 1.09001 * 109.44442 * 181.37659 * 13 12 11 43 43 H 1.09004 * 110.71612 * 271.93773 * 18 16 14 44 44 H 1.08998 * 110.72279 * 35.03323 * 18 16 14 45 45 H 1.09000 * 109.88903 * 97.22442 * 19 18 16 46 46 H 1.09006 * 109.88279 * 218.38887 * 19 18 16 47 47 H 0.97006 * 120.00262 * 180.02562 * 24 23 21 48 48 H 1.08999 * 110.36371 * 265.28816 * 29 20 19 49 49 H 1.08995 * 110.36477 * 142.97168 * 29 20 19 50 50 H 1.09004 * 109.58152 * 245.90367 * 30 10 8 51 51 H 1.08997 * 109.58736 * 6.32297 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 7 2.2963 2.1664 -1.0779 5 6 2.7124 3.3422 -0.6900 6 8 2.7216 3.3854 0.6460 7 6 2.3012 2.1814 1.0991 8 6 2.1567 1.7754 2.5016 9 8 1.6331 0.7118 2.7763 10 7 2.6039 2.5804 3.4857 11 6 3.3809 3.7870 3.1708 12 6 4.6944 3.7471 3.9581 13 6 4.3870 3.5681 5.4466 14 6 3.6544 2.2420 5.6620 15 1 4.2718 1.4211 5.2975 16 6 3.3766 2.0485 7.1542 17 1 2.8185 2.8931 7.5582 18 6 2.6294 0.7134 7.4122 19 6 3.0367 0.3635 8.8590 20 7 4.2915 1.0750 9.1435 21 6 4.9744 1.0455 10.3300 22 1 5.8208 1.6986 10.4824 23 6 4.5787 0.1758 11.3372 24 7 3.6585 -0.7340 11.0970 25 14 5.3522 0.2970 13.0332 26 1 4.6350 1.3230 13.8321 27 1 5.2564 -1.0182 13.7160 28 1 6.7800 0.6827 12.8995 29 6 4.6930 1.8251 7.9395 30 6 2.3290 2.2648 4.8941 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.8933 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 2.9988 4.1522 -1.3445 37 1 3.5958 3.8147 2.1025 38 1 2.8117 4.6724 3.4542 39 1 5.2369 4.6805 3.8083 40 1 5.3029 2.9127 3.6094 41 1 3.7585 4.3901 5.7890 42 1 5.3192 3.5639 6.0117 43 1 1.5511 0.8545 7.3386 44 1 2.9645 -0.0567 6.7174 45 1 2.2607 0.6892 9.5518 46 1 3.1911 -0.7116 8.9510 47 1 3.3817 -1.3415 11.8009 48 1 5.3949 1.2405 7.3449 49 1 5.1354 2.7814 8.2184 50 1 1.6740 3.0261 5.3180 51 1 1.8499 1.2882 4.9629 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961235606.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:03:37 Heat of formation + Delta-G solvation = -13.352043 kcal Electronic energy + Delta-G solvation = -31425.818821 eV Core-core repulsion = 27326.393053 eV Total energy + Delta-G solvation = -4099.425768 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -44.53587 -41.27537 -39.67956 -38.18819 -36.71728 -35.18814 -34.02609 -33.67035 -32.58998 -30.96520 -30.56590 -28.85785 -26.86842 -26.50496 -25.14615 -24.34730 -24.05408 -22.71680 -21.90992 -21.63465 -20.89563 -20.59223 -18.86521 -18.45180 -17.99124 -17.83018 -17.13444 -16.92919 -16.47320 -16.02617 -15.89348 -15.59340 -15.44496 -15.27807 -15.03419 -14.59890 -14.38458 -14.27133 -14.06520 -13.99209 -13.85322 -13.69515 -13.52474 -13.32631 -12.84500 -12.76146 -12.54688 -12.35464 -12.28116 -12.12949 -12.09946 -12.05738 -12.00452 -11.84372 -11.72956 -11.63423 -11.36424 -11.33623 -11.15417 -11.01223 -10.73048 -10.15312 -9.65129 -8.88368 -7.83549 -5.22744 -0.24699 1.32484 1.40812 1.44469 1.47515 1.55511 1.87036 2.04024 2.49597 3.10505 3.31731 3.40310 3.58703 3.62338 3.70385 3.82976 3.89991 4.04224 4.13650 4.18858 4.27177 4.30157 4.36522 4.37984 4.39900 4.45917 4.52999 4.59224 4.69923 4.74651 4.76015 4.86566 4.89423 4.92250 4.95487 4.98169 5.05600 5.11380 5.12880 5.15648 5.23649 5.30267 5.34793 5.39124 5.44280 5.48663 5.53563 5.67346 5.77555 6.15259 6.21206 6.52719 6.86036 7.08946 7.78134 8.43997 9.24795 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.021881 B = 0.002260 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.354187 B =12387.096928 C =13363.205873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.053 4.053 3 C 0.076 3.924 4 N -0.523 5.523 5 C 0.223 3.777 6 O -0.182 6.182 7 C -0.128 4.128 8 C 0.598 3.402 9 O -0.546 6.546 10 N -0.599 5.599 11 C 0.094 3.906 12 C -0.126 4.126 13 C -0.114 4.114 14 C -0.075 4.075 15 H 0.057 0.943 16 C -0.075 4.075 17 H 0.085 0.915 18 C -0.125 4.125 19 C 0.177 3.823 20 N -0.628 5.628 21 C -0.243 4.243 22 H 0.083 0.917 23 C -0.070 4.070 24 N -0.952 5.952 25 Si 0.980 3.020 26 H -0.284 1.284 27 H -0.296 1.296 28 H -0.267 1.267 29 C 0.140 3.860 30 C 0.122 3.878 31 H 0.059 0.941 32 H 0.076 0.924 33 H 0.041 0.959 34 H 0.091 0.909 35 H 0.080 0.920 36 H 0.309 0.691 37 H 0.108 0.892 38 H 0.091 0.909 39 H 0.105 0.895 40 H 0.054 0.946 41 H 0.079 0.921 42 H 0.067 0.933 43 H 0.078 0.922 44 H 0.058 0.942 45 H -0.005 1.005 46 H 0.018 0.982 47 H 0.246 0.754 48 H 0.013 0.987 49 H 0.048 0.952 50 H 0.088 0.912 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.317 14.131 -27.188 30.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.091 4.091 3 C -0.047 4.047 4 N -0.251 5.251 5 C -0.001 4.001 6 O -0.069 6.069 7 C -0.183 4.183 8 C 0.387 3.613 9 O -0.426 6.426 10 N -0.329 5.329 11 C -0.026 4.026 12 C -0.164 4.164 13 C -0.151 4.151 14 C -0.095 4.095 15 H 0.076 0.924 16 C -0.095 4.095 17 H 0.103 0.897 18 C -0.163 4.163 19 C 0.052 3.948 20 N -0.354 5.354 21 C -0.372 4.372 22 H 0.101 0.899 23 C -0.263 4.263 24 N -0.601 5.601 25 Si 0.808 3.192 26 H -0.211 1.211 27 H -0.223 1.223 28 H -0.192 1.192 29 C 0.016 3.984 30 C 0.000 4.000 31 H 0.078 0.922 32 H 0.095 0.905 33 H 0.061 0.939 34 H 0.110 0.890 35 H 0.099 0.901 36 H 0.324 0.676 37 H 0.125 0.875 38 H 0.109 0.891 39 H 0.123 0.877 40 H 0.073 0.927 41 H 0.098 0.902 42 H 0.085 0.915 43 H 0.097 0.903 44 H 0.077 0.923 45 H 0.013 0.987 46 H 0.036 0.964 47 H 0.055 0.945 48 H 0.030 0.970 49 H 0.066 0.934 50 H 0.106 0.894 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.626 13.359 -27.434 30.627 hybrid contribution 0.401 -0.377 1.985 2.060 sum -2.225 12.982 -25.449 28.655 Atomic orbital electron populations 1.21568 0.93135 1.02980 1.01308 1.20131 0.97252 0.87826 1.03881 1.22218 0.97044 0.98508 0.86919 1.70387 1.18751 1.04670 1.31265 1.29693 0.93231 0.97508 0.79668 1.84645 1.64779 1.32740 1.24783 1.22552 1.14047 0.86313 0.95378 1.16726 0.78822 0.83557 0.82243 1.90861 1.46551 1.23042 1.82181 1.48095 1.53159 1.25629 1.06063 1.22382 0.92223 0.86157 1.01886 1.21893 0.96480 1.03581 0.94452 1.21600 1.00850 0.96043 0.96657 1.21308 0.96237 0.99199 0.92722 0.92414 1.22180 0.96085 0.97154 0.94058 0.89713 1.22743 1.00246 0.97395 0.95934 1.20960 0.86652 0.95251 0.91936 1.44843 1.24739 1.55666 1.10139 1.19469 1.10531 1.16558 0.90648 0.89905 1.25734 1.00531 0.97414 1.02658 1.70207 1.35516 1.21699 1.32636 0.85074 0.78371 0.76394 0.79389 1.21080 1.22263 1.19175 1.21706 0.95201 0.94418 0.87108 1.21695 0.97073 1.02679 0.78536 0.92224 0.90487 0.93941 0.89033 0.90111 0.67632 0.87463 0.89074 0.87713 0.92672 0.90206 0.91470 0.90317 0.92337 0.98709 0.96390 0.94476 0.96955 0.93420 0.89398 0.90414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.52 9.89 71.98 0.71 -1.81 16 2 C -0.05 -1.10 5.85 29.85 0.17 -0.93 16 3 C 0.08 1.64 6.41 41.83 0.27 1.90 16 4 N -0.52 -9.22 11.26 -303.11 -3.41 -12.63 16 5 C 0.22 2.11 13.21 130.42 1.72 3.83 16 6 O -0.18 -2.54 7.47 -7.06 -0.05 -2.59 16 7 C -0.13 -2.72 6.79 24.05 0.16 -2.55 16 8 C 0.60 15.30 7.65 86.46 0.66 15.96 16 9 O -0.55 -17.35 14.33 -4.32 -0.06 -17.42 16 10 N -0.60 -12.97 2.97 -823.54 -2.45 -15.42 16 11 C 0.09 1.37 6.12 86.36 0.53 1.90 16 12 C -0.13 -1.83 6.08 30.67 0.19 -1.64 16 13 C -0.11 -2.16 5.05 30.62 0.15 -2.01 16 14 C -0.07 -1.88 1.86 -10.72 -0.02 -1.90 16 15 H 0.06 1.68 8.07 -2.39 -0.02 1.66 16 16 C -0.07 -2.42 2.56 -9.40 -0.02 -2.45 16 17 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 18 C -0.12 -4.76 5.40 31.78 0.17 -4.59 16 19 C 0.18 9.16 5.45 86.73 0.47 9.64 16 20 N -0.63 -33.29 3.39 -692.00 -2.35 -35.64 16 21 C -0.24 -13.98 10.25 84.04 0.86 -13.12 16 22 H 0.08 4.51 7.84 -2.91 -0.02 4.49 16 23 C -0.07 -4.13 5.44 84.86 0.46 -3.67 16 24 N -0.95 -59.45 10.53 21.65 0.23 -59.23 16 25 Si 0.98 46.74 29.56 68.60 2.03 48.77 16 26 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 27 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 28 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 29 C 0.14 5.71 5.95 86.85 0.52 6.23 16 30 C 0.12 2.90 5.39 86.36 0.47 3.36 16 31 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 33 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.08 1.96 6.65 -2.39 -0.02 1.94 16 36 H 0.31 -1.14 8.06 -2.91 -0.02 -1.16 16 37 H 0.11 1.39 4.27 -13.74 -0.06 1.33 16 38 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.07 1.39 7.46 -2.39 -0.02 1.37 16 43 H 0.08 2.66 8.14 -2.38 -0.02 2.65 16 44 H 0.06 2.22 8.04 -2.39 -0.02 2.21 16 45 H -0.01 -0.30 8.00 -2.39 -0.02 -0.32 16 46 H 0.02 1.07 6.91 -2.38 -0.02 1.05 16 47 H 0.25 14.92 8.31 -92.70 -0.77 14.15 16 48 H 0.01 0.52 7.98 -2.39 -0.02 0.51 16 49 H 0.05 1.82 8.05 -2.39 -0.02 1.80 16 50 H 0.09 1.82 8.14 -2.38 -0.02 1.80 16 51 H 0.08 2.22 6.37 -2.39 -0.02 2.20 16 Total: -1.00 -78.31 395.78 2.28 -76.03 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: 0.87 Total: 9.96 kcal Atomic # 6 Polarization: 0.68 SS G_CDS: 7.48 Total: 8.16 kcal Atomic # 7 Polarization: -114.93 SS G_CDS: -7.98 Total: -122.92 kcal Atomic # 8 Polarization: -19.89 SS G_CDS: -0.11 Total: -20.01 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 2.03 Total: 48.77 kcal Total: -78.31 2.28 -76.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961235606.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.681 kcal (2) G-P(sol) polarization free energy of solvation -78.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds