Wall clock time and date at job start Wed Apr 1 2020 05:39:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50702 * 109.46982 * 2 1 4 4 O 1.33490 * 126.82708 * 269.97737 * 3 2 1 5 5 N 1.20667 * 113.15540 * 180.02562 * 4 3 2 6 6 C 1.30015 * 112.29538 * 359.71153 * 5 4 3 7 7 C 1.37361 * 126.82631 * 90.00494 * 3 2 1 8 8 C 1.47394 * 128.56744 * 359.95065 * 7 3 2 9 9 O 1.21603 * 119.99650 * 47.03398 * 8 7 3 10 10 N 1.34771 * 120.00069 * 227.02611 * 8 7 3 11 11 C 1.46922 * 120.63445 * 355.76458 * 10 8 7 12 12 C 1.53191 * 108.77900 * 126.36552 * 11 10 8 13 13 C 1.53041 * 109.31305 * 54.63625 * 12 11 10 14 14 C 1.53041 * 109.53783 * 298.63467 * 13 12 11 15 15 H 1.08996 * 109.52820 * 301.39854 * 14 13 12 16 16 C 1.52994 * 109.49784 * 181.31410 * 14 13 12 17 17 H 1.09007 * 110.91803 * 302.61362 * 16 14 13 18 18 C 1.55163 * 111.00317 * 66.51453 * 16 14 13 19 19 C 1.54329 * 102.94050 * 153.57578 * 18 16 14 20 20 N 1.47291 * 107.30584 * 337.81665 * 19 18 16 21 21 C 1.36930 * 125.78846 * 178.92612 * 20 19 18 22 22 H 1.08008 * 119.99658 * 179.97438 * 21 20 19 23 23 C 1.38815 * 120.00371 * 359.97438 * 21 20 19 24 24 N 1.31614 * 120.00026 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00159 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.46908 * 60.00020 * 25 23 21 27 27 H 1.48492 * 109.47261 * 180.02562 * 25 23 21 28 28 H 1.48499 * 109.47182 * 300.00432 * 25 23 21 29 29 C 1.47424 * 108.55801 * 358.92611 * 20 19 18 30 30 C 1.46931 * 120.63176 * 175.73834 * 10 8 7 31 31 H 1.09004 * 109.47126 * 299.99764 * 1 2 3 32 32 H 1.08996 * 109.47727 * 59.99968 * 1 2 3 33 33 H 1.08999 * 109.46794 * 180.02562 * 1 2 3 34 34 H 1.09004 * 109.47126 * 240.00236 * 2 1 3 35 35 H 1.09002 * 109.47320 * 120.00076 * 2 1 3 36 36 H 1.08002 * 127.32784 * 180.30457 * 6 5 4 37 37 H 1.08998 * 109.59166 * 246.15663 * 11 10 8 38 38 H 1.09006 * 109.58533 * 6.43625 * 11 10 8 39 39 H 1.09002 * 109.50210 * 174.58667 * 12 11 10 40 40 H 1.09002 * 109.49777 * 294.68312 * 12 11 10 41 41 H 1.08994 * 109.46152 * 178.61645 * 13 12 11 42 42 H 1.08997 * 109.45734 * 58.65781 * 13 12 11 43 43 H 1.09003 * 110.71840 * 271.93650 * 18 16 14 44 44 H 1.08992 * 110.71964 * 35.21314 * 18 16 14 45 45 H 1.08993 * 109.87825 * 97.22648 * 19 18 16 46 46 H 1.09001 * 109.87763 * 218.23653 * 19 18 16 47 47 H 0.96993 * 120.00204 * 179.97438 * 24 23 21 48 48 H 1.08998 * 110.36532 * 265.26149 * 29 20 19 49 49 H 1.08998 * 110.36300 * 143.05166 * 29 20 19 50 50 H 1.08994 * 109.58808 * 113.84319 * 30 10 8 51 51 H 1.09000 * 109.70013 * 353.48685 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2994 2.1751 -1.0685 5 7 2.6905 3.2804 -0.7833 6 6 2.7497 3.4663 0.5021 7 6 2.3068 2.1971 1.0995 8 6 2.1821 1.8469 2.5258 9 8 2.6252 0.7904 2.9334 10 7 1.5772 2.6977 3.3782 11 6 1.1197 4.0168 2.9205 12 6 -0.3615 4.1762 3.2776 13 6 -0.5502 3.9307 4.7763 14 6 -0.1218 2.5019 5.1188 15 1 -0.7139 1.7949 4.5379 16 6 -0.3415 2.2469 6.6113 17 1 0.2064 2.9708 7.2146 18 6 -1.8531 2.2617 6.9614 19 6 -1.9268 1.3614 8.2127 20 7 -0.7364 0.4941 8.1993 21 6 -0.4140 -0.4380 9.1491 22 1 0.4861 -1.0258 9.0452 23 6 -1.2439 -0.6273 10.2457 24 7 -2.3409 0.0886 10.3721 25 14 -0.8043 -1.8994 11.5411 26 1 0.5113 -1.5606 12.1411 27 1 -1.8448 -1.9070 12.6005 28 1 -0.7300 -3.2421 10.9112 29 6 0.0513 0.7972 6.9906 30 6 1.3621 2.3236 4.7827 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 3.0601 4.3613 1.0208 37 1 1.7003 4.7964 3.4137 38 1 1.2478 4.0936 1.8408 39 1 -0.6888 5.1861 3.0303 40 1 -0.9515 3.4538 2.7134 41 1 -1.5995 4.0676 5.0375 42 1 0.0592 4.6374 5.3395 43 1 -2.1851 3.2735 7.1942 44 1 -2.4417 1.8392 6.1472 45 1 -1.9266 1.9766 9.1124 46 1 -2.8312 0.7539 8.1794 47 1 -2.9210 -0.0439 11.1381 48 1 -0.2098 0.1105 6.1855 49 1 1.1177 0.7378 7.2081 50 1 1.9626 2.9650 5.4277 51 1 1.6484 1.2828 4.9337 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961252967.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:39:40 Heat of formation + Delta-G solvation = 42.036898 kcal Electronic energy + Delta-G solvation = -31615.668423 eV Core-core repulsion = 27518.644499 eV Total energy + Delta-G solvation = -4097.023923 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -45.25206 -40.37903 -38.34136 -36.74115 -35.08341 -34.28938 -33.41231 -32.30210 -31.22530 -30.57870 -29.07700 -27.14715 -26.41999 -24.68456 -24.38341 -24.18773 -22.88481 -21.97737 -20.81662 -19.88815 -19.52261 -19.21466 -18.11597 -17.89234 -16.93727 -16.82335 -16.15262 -15.54129 -15.20697 -14.78680 -14.65420 -14.50921 -14.39229 -14.00298 -13.97294 -13.78118 -13.57795 -13.18259 -13.07726 -12.90841 -12.40923 -12.18945 -12.12685 -12.01594 -11.91118 -11.79549 -11.33186 -11.30123 -11.08915 -11.02184 -10.82451 -10.77871 -10.63055 -10.60020 -10.25608 -10.10285 -9.97442 -9.79741 -9.74630 -9.71402 -9.54189 -8.77074 -8.55715 -6.77448 -5.66701 -2.99377 0.86679 1.47749 2.41557 2.51180 2.91118 3.43695 3.47702 3.48979 3.83300 3.97521 4.27200 4.48529 4.51809 4.57090 4.70701 4.72703 4.77895 4.84284 4.90962 4.94649 5.09597 5.19691 5.29059 5.38668 5.42105 5.49075 5.50032 5.50889 5.61305 5.62821 5.65306 5.69686 5.74612 5.81599 5.87738 5.91840 5.99976 6.05425 6.24536 6.25007 6.39173 6.45734 6.58657 6.62397 6.77640 7.01674 7.15433 7.60796 7.67056 7.80820 7.86826 7.91653 8.30922 9.27105 9.87835 10.54795 11.45339 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016985 B = 0.002477 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.121830 B =11303.072605 C =12042.713783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.053 4.053 3 C 0.042 3.958 4 O 0.093 5.907 5 N -0.354 5.354 6 C 0.020 3.980 7 C -0.253 4.253 8 C 0.597 3.403 9 O -0.526 6.526 10 N -0.599 5.599 11 C 0.099 3.901 12 C -0.134 4.134 13 C -0.115 4.115 14 C -0.086 4.086 15 H 0.074 0.926 16 C -0.095 4.095 17 H 0.074 0.926 18 C -0.135 4.135 19 C 0.177 3.823 20 N -0.606 5.606 21 C -0.226 4.226 22 H 0.077 0.923 23 C -0.010 4.010 24 N -0.924 5.924 25 Si 0.911 3.089 26 H -0.285 1.285 27 H -0.291 1.291 28 H -0.285 1.285 29 C 0.140 3.860 30 C 0.117 3.883 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.075 0.925 34 H 0.095 0.905 35 H 0.111 0.889 36 H 0.201 0.799 37 H 0.072 0.928 38 H 0.084 0.916 39 H 0.074 0.926 40 H 0.066 0.934 41 H 0.071 0.929 42 H 0.064 0.936 43 H 0.057 0.943 44 H 0.054 0.946 45 H 0.044 0.956 46 H 0.040 0.960 47 H 0.252 0.748 48 H 0.017 0.983 49 H 0.036 0.964 50 H 0.071 0.929 51 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.510 9.658 -22.510 25.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.091 4.091 3 C -0.022 4.022 4 O 0.033 5.967 5 N -0.059 5.059 6 C -0.162 4.162 7 C -0.260 4.260 8 C 0.384 3.616 9 O -0.403 6.403 10 N -0.331 5.331 11 C -0.024 4.024 12 C -0.172 4.172 13 C -0.152 4.152 14 C -0.105 4.105 15 H 0.092 0.908 16 C -0.115 4.115 17 H 0.093 0.907 18 C -0.174 4.174 19 C 0.052 3.948 20 N -0.333 5.333 21 C -0.354 4.354 22 H 0.095 0.905 23 C -0.206 4.206 24 N -0.572 5.572 25 Si 0.742 3.258 26 H -0.212 1.212 27 H -0.216 1.216 28 H -0.212 1.212 29 C 0.014 3.986 30 C -0.005 4.005 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.094 0.906 34 H 0.113 0.887 35 H 0.130 0.870 36 H 0.218 0.782 37 H 0.091 0.909 38 H 0.102 0.898 39 H 0.093 0.907 40 H 0.085 0.915 41 H 0.090 0.910 42 H 0.083 0.917 43 H 0.076 0.924 44 H 0.073 0.927 45 H 0.062 0.938 46 H 0.058 0.942 47 H 0.062 0.938 48 H 0.035 0.965 49 H 0.055 0.945 50 H 0.089 0.911 51 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 5.924 9.751 -23.146 25.806 hybrid contribution 0.105 -0.619 1.554 1.676 sum 6.029 9.132 -21.592 24.207 Atomic orbital electron populations 1.21773 0.92762 1.03429 1.02705 1.20401 0.97131 0.85621 1.05971 1.24800 0.96445 0.96031 0.84945 1.84563 1.61290 1.17594 1.33302 1.73666 1.16162 0.98653 1.17375 1.26365 1.01622 0.98869 0.89387 1.22059 1.13407 0.95114 0.95442 1.16865 0.78032 0.83552 0.83151 1.90838 1.47913 1.24015 1.77493 1.47972 1.57892 1.16429 1.10831 1.21977 0.95786 0.84204 1.00393 1.21917 0.95379 1.02167 0.97726 1.21586 1.02310 0.96695 0.94630 1.21473 0.95046 0.96961 0.97063 0.90799 1.22322 0.97686 0.98807 0.92692 0.90713 1.22882 0.94550 0.99903 1.00043 1.21165 0.90140 0.90959 0.92502 1.44527 1.23418 1.43242 1.22076 1.19030 1.05737 1.11636 0.99015 0.90540 1.24788 0.97217 0.99889 0.98683 1.69952 1.14041 1.42597 1.30589 0.86210 0.77237 0.81153 0.81248 1.21199 1.21649 1.21201 1.21575 0.95062 0.92027 0.89921 1.21835 0.96511 1.03074 0.79059 0.92043 0.92010 0.90608 0.88692 0.87031 0.78236 0.90939 0.89779 0.90731 0.91542 0.91045 0.91711 0.92424 0.92692 0.93770 0.94194 0.93807 0.96524 0.94536 0.91117 0.88286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.89 37.16 0.37 -0.67 16 2 C -0.05 -0.41 6.38 -27.88 -0.18 -0.59 16 3 C 0.04 0.40 6.80 -34.63 -0.24 0.16 16 4 O 0.09 0.92 11.06 18.66 0.21 1.13 16 5 N -0.35 -3.62 12.01 31.81 0.38 -3.24 16 6 C 0.02 0.18 10.11 -14.73 -0.15 0.03 16 7 C -0.25 -2.65 5.46 -102.90 -0.56 -3.21 16 8 C 0.60 7.54 7.51 -12.54 -0.09 7.45 16 9 O -0.53 -8.47 15.76 5.27 0.08 -8.39 16 10 N -0.60 -6.63 2.97 -174.05 -0.52 -7.15 16 11 C 0.10 0.79 6.02 -3.71 -0.02 0.77 16 12 C -0.13 -1.08 6.08 -26.61 -0.16 -1.24 16 13 C -0.11 -1.15 5.04 -26.69 -0.13 -1.29 16 14 C -0.09 -1.09 1.85 -90.50 -0.17 -1.26 16 15 H 0.07 1.02 8.11 -51.93 -0.42 0.60 16 16 C -0.10 -1.55 2.56 -88.47 -0.23 -1.78 16 17 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 18 C -0.14 -2.42 5.58 -24.89 -0.14 -2.56 16 19 C 0.18 4.30 5.38 -2.91 -0.02 4.28 16 20 N -0.61 -15.68 3.40 -169.86 -0.58 -16.26 16 21 C -0.23 -6.41 10.28 -15.06 -0.15 -6.57 16 22 H 0.08 2.10 7.83 -52.48 -0.41 1.69 16 23 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 24 N -0.92 -27.48 10.33 55.49 0.57 -26.90 16 25 Si 0.91 22.44 29.55 -169.99 -5.02 17.42 16 26 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 27 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 28 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 29 C 0.14 2.89 5.73 -2.53 -0.01 2.88 16 30 C 0.12 1.47 5.39 -3.71 -0.02 1.45 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.11 1.03 7.34 -51.93 -0.38 0.65 16 36 H 0.20 1.16 7.66 -52.49 -0.40 0.76 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.08 0.59 4.38 -51.93 -0.23 0.37 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.07 0.74 7.45 -51.93 -0.39 0.36 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.06 0.92 8.11 -51.93 -0.42 0.50 16 44 H 0.05 0.94 8.01 -51.93 -0.42 0.52 16 45 H 0.04 1.19 7.39 -51.93 -0.38 0.80 16 46 H 0.04 1.08 7.52 -51.93 -0.39 0.69 16 47 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 48 H 0.02 0.36 8.04 -51.93 -0.42 -0.06 16 49 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 50 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 51 H 0.10 1.49 6.45 -51.93 -0.33 1.15 16 LS Contribution 398.14 15.07 6.00 6.00 Total: -1.00 -33.34 398.14 -9.26 -42.59 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -8.38 Total: -2.67 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: -2.00 Total: -2.53 kcal Atomic # 7 Polarization: -53.40 SS G_CDS: -0.14 Total: -53.54 kcal Atomic # 8 Polarization: -7.55 SS G_CDS: 0.29 Total: -7.26 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.34 -9.26 -42.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961252967.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.628 kcal (2) G-P(sol) polarization free energy of solvation -33.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds