Wall clock time and date at job start Wed Apr 1 2020 05:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50702 * 109.46982 * 2 1 4 4 O 1.33490 * 126.82708 * 269.97737 * 3 2 1 5 5 N 1.20667 * 113.15540 * 180.02562 * 4 3 2 6 6 C 1.30015 * 112.29538 * 359.71153 * 5 4 3 7 7 C 1.37361 * 126.82631 * 90.00494 * 3 2 1 8 8 C 1.47394 * 128.56744 * 359.95065 * 7 3 2 9 9 O 1.21603 * 119.99650 * 47.03398 * 8 7 3 10 10 N 1.34771 * 120.00069 * 227.02611 * 8 7 3 11 11 C 1.46922 * 120.63445 * 355.76458 * 10 8 7 12 12 C 1.53191 * 108.77900 * 126.36552 * 11 10 8 13 13 C 1.53041 * 109.31305 * 54.63625 * 12 11 10 14 14 C 1.53041 * 109.53783 * 298.63467 * 13 12 11 15 15 H 1.08996 * 109.52820 * 301.39854 * 14 13 12 16 16 C 1.52994 * 109.49784 * 181.31410 * 14 13 12 17 17 H 1.09007 * 110.91803 * 302.61362 * 16 14 13 18 18 C 1.55163 * 111.00317 * 66.51453 * 16 14 13 19 19 C 1.54329 * 102.94050 * 153.57578 * 18 16 14 20 20 N 1.47291 * 107.30584 * 337.81665 * 19 18 16 21 21 C 1.36930 * 125.78846 * 178.92612 * 20 19 18 22 22 H 1.08008 * 119.99658 * 179.97438 * 21 20 19 23 23 C 1.38815 * 120.00371 * 359.97438 * 21 20 19 24 24 N 1.31614 * 120.00026 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00159 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.46908 * 60.00020 * 25 23 21 27 27 H 1.48492 * 109.47261 * 180.02562 * 25 23 21 28 28 H 1.48499 * 109.47182 * 300.00432 * 25 23 21 29 29 C 1.47424 * 108.55801 * 358.92611 * 20 19 18 30 30 C 1.46931 * 120.63176 * 175.73834 * 10 8 7 31 31 H 1.09004 * 109.47126 * 299.99764 * 1 2 3 32 32 H 1.08996 * 109.47727 * 59.99968 * 1 2 3 33 33 H 1.08999 * 109.46794 * 180.02562 * 1 2 3 34 34 H 1.09004 * 109.47126 * 240.00236 * 2 1 3 35 35 H 1.09002 * 109.47320 * 120.00076 * 2 1 3 36 36 H 1.08002 * 127.32784 * 180.30457 * 6 5 4 37 37 H 1.08998 * 109.59166 * 246.15663 * 11 10 8 38 38 H 1.09006 * 109.58533 * 6.43625 * 11 10 8 39 39 H 1.09002 * 109.50210 * 174.58667 * 12 11 10 40 40 H 1.09002 * 109.49777 * 294.68312 * 12 11 10 41 41 H 1.08994 * 109.46152 * 178.61645 * 13 12 11 42 42 H 1.08997 * 109.45734 * 58.65781 * 13 12 11 43 43 H 1.09003 * 110.71840 * 271.93650 * 18 16 14 44 44 H 1.08992 * 110.71964 * 35.21314 * 18 16 14 45 45 H 1.08993 * 109.87825 * 97.22648 * 19 18 16 46 46 H 1.09001 * 109.87763 * 218.23653 * 19 18 16 47 47 H 0.96993 * 120.00204 * 179.97438 * 24 23 21 48 48 H 1.08998 * 110.36532 * 265.26149 * 29 20 19 49 49 H 1.08998 * 110.36300 * 143.05166 * 29 20 19 50 50 H 1.08994 * 109.58808 * 113.84319 * 30 10 8 51 51 H 1.09000 * 109.70013 * 353.48685 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2994 2.1751 -1.0685 5 7 2.6905 3.2804 -0.7833 6 6 2.7497 3.4663 0.5021 7 6 2.3068 2.1971 1.0995 8 6 2.1821 1.8469 2.5258 9 8 2.6252 0.7904 2.9334 10 7 1.5772 2.6977 3.3782 11 6 1.1197 4.0168 2.9205 12 6 -0.3615 4.1762 3.2776 13 6 -0.5502 3.9307 4.7763 14 6 -0.1218 2.5019 5.1188 15 1 -0.7139 1.7949 4.5379 16 6 -0.3415 2.2469 6.6113 17 1 0.2064 2.9708 7.2146 18 6 -1.8531 2.2617 6.9614 19 6 -1.9268 1.3614 8.2127 20 7 -0.7364 0.4941 8.1993 21 6 -0.4140 -0.4380 9.1491 22 1 0.4861 -1.0258 9.0452 23 6 -1.2439 -0.6273 10.2457 24 7 -2.3409 0.0886 10.3721 25 14 -0.8043 -1.8994 11.5411 26 1 0.5113 -1.5606 12.1411 27 1 -1.8448 -1.9070 12.6005 28 1 -0.7300 -3.2421 10.9112 29 6 0.0513 0.7972 6.9906 30 6 1.3621 2.3236 4.7827 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 3.0601 4.3613 1.0208 37 1 1.7003 4.7964 3.4137 38 1 1.2478 4.0936 1.8408 39 1 -0.6888 5.1861 3.0303 40 1 -0.9515 3.4538 2.7134 41 1 -1.5995 4.0676 5.0375 42 1 0.0592 4.6374 5.3395 43 1 -2.1851 3.2735 7.1942 44 1 -2.4417 1.8392 6.1472 45 1 -1.9266 1.9766 9.1124 46 1 -2.8312 0.7539 8.1794 47 1 -2.9210 -0.0439 11.1381 48 1 -0.2098 0.1105 6.1855 49 1 1.1177 0.7378 7.2081 50 1 1.9626 2.9650 5.4277 51 1 1.6484 1.2828 4.9337 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961252967.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:39:39 Heat of formation + Delta-G solvation = 22.756375 kcal Electronic energy + Delta-G solvation = -31616.504489 eV Core-core repulsion = 27518.644499 eV Total energy + Delta-G solvation = -4097.859990 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -45.97742 -41.33735 -39.66188 -38.03746 -35.77460 -35.38843 -34.62749 -33.54666 -32.48361 -31.39009 -30.80302 -28.67765 -27.38441 -26.38598 -25.15740 -24.96171 -24.00685 -22.77858 -21.84494 -21.69801 -20.83660 -20.05813 -18.96551 -18.81369 -18.61057 -17.66802 -17.16241 -16.87000 -16.50636 -16.13671 -15.69768 -15.52301 -15.46566 -15.31413 -14.92793 -14.66292 -14.49886 -14.16684 -14.01988 -13.95477 -13.78942 -13.58948 -13.53976 -13.31482 -12.91339 -12.82383 -12.71428 -12.53494 -12.23740 -12.17075 -12.10034 -11.96477 -11.92289 -11.80011 -11.68382 -11.51285 -11.41626 -11.36757 -11.09812 -10.95683 -10.70631 -10.50212 -9.68431 -8.89188 -7.85493 -5.20554 0.09744 0.76372 1.43864 1.47467 1.53766 1.56015 1.68987 2.08642 2.49084 3.15640 3.28052 3.32038 3.49900 3.62181 3.66216 3.83181 3.87993 3.93393 4.07277 4.10030 4.16832 4.18962 4.26638 4.31010 4.36138 4.42731 4.55922 4.61644 4.69190 4.70047 4.77387 4.79726 4.84671 4.90032 4.92673 4.93538 4.97819 5.01916 5.10930 5.15226 5.18498 5.24475 5.36142 5.41433 5.44519 5.49833 5.56701 5.69921 5.79303 6.20416 6.27741 6.97687 7.09488 7.10710 7.78378 8.43521 9.24936 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016985 B = 0.002477 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.121830 B =11303.072605 C =12042.713783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.054 4.054 3 C 0.048 3.952 4 O 0.088 5.912 5 N -0.371 5.371 6 C 0.037 3.963 7 C -0.273 4.273 8 C 0.596 3.404 9 O -0.572 6.572 10 N -0.594 5.594 11 C 0.095 3.905 12 C -0.128 4.128 13 C -0.111 4.111 14 C -0.073 4.073 15 H 0.061 0.939 16 C -0.076 4.076 17 H 0.081 0.919 18 C -0.118 4.118 19 C 0.182 3.818 20 N -0.630 5.630 21 C -0.245 4.245 22 H 0.078 0.922 23 C -0.067 4.067 24 N -0.951 5.951 25 Si 0.978 3.022 26 H -0.276 1.276 27 H -0.292 1.292 28 H -0.279 1.279 29 C 0.136 3.864 30 C 0.120 3.880 31 H 0.043 0.957 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.119 0.881 35 H 0.093 0.907 36 H 0.232 0.768 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.103 0.897 40 H 0.057 0.943 41 H 0.073 0.927 42 H 0.078 0.922 43 H 0.085 0.915 44 H 0.065 0.935 45 H 0.011 0.989 46 H 0.000 1.000 47 H 0.247 0.753 48 H 0.011 0.989 49 H 0.035 0.965 50 H 0.083 0.917 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.088 11.739 -24.284 27.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.092 4.092 3 C -0.016 4.016 4 O 0.030 5.970 5 N -0.077 5.077 6 C -0.145 4.145 7 C -0.280 4.280 8 C 0.384 3.616 9 O -0.453 6.453 10 N -0.325 5.325 11 C -0.027 4.027 12 C -0.166 4.166 13 C -0.149 4.149 14 C -0.092 4.092 15 H 0.079 0.921 16 C -0.095 4.095 17 H 0.099 0.901 18 C -0.156 4.156 19 C 0.057 3.943 20 N -0.356 5.356 21 C -0.374 4.374 22 H 0.095 0.905 23 C -0.259 4.259 24 N -0.600 5.600 25 Si 0.806 3.194 26 H -0.202 1.202 27 H -0.218 1.218 28 H -0.205 1.205 29 C 0.011 3.989 30 C -0.002 4.002 31 H 0.062 0.938 32 H 0.092 0.908 33 H 0.104 0.896 34 H 0.137 0.863 35 H 0.111 0.889 36 H 0.248 0.752 37 H 0.115 0.885 38 H 0.115 0.885 39 H 0.121 0.879 40 H 0.076 0.924 41 H 0.092 0.908 42 H 0.096 0.904 43 H 0.104 0.896 44 H 0.084 0.916 45 H 0.029 0.971 46 H 0.019 0.981 47 H 0.056 0.944 48 H 0.029 0.971 49 H 0.053 0.947 50 H 0.101 0.899 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.504 11.857 -24.968 28.395 hybrid contribution -0.059 -1.301 2.088 2.461 sum 6.444 10.556 -22.880 26.008 Atomic orbital electron populations 1.21748 0.92070 1.04045 1.02362 1.20468 0.97623 0.84860 1.06227 1.25097 0.95296 0.96387 0.84808 1.84562 1.61525 1.17679 1.33203 1.73663 1.17163 0.98892 1.18028 1.26794 0.99949 0.98969 0.88793 1.21942 1.15196 0.96495 0.94409 1.17142 0.77458 0.82986 0.84024 1.90813 1.50052 1.26014 1.78394 1.48021 1.57147 1.17424 1.09917 1.22272 0.96102 0.82814 1.01472 1.21893 0.95199 1.03591 0.95879 1.21574 1.02569 0.94329 0.96396 1.21307 0.95056 0.99044 0.93821 0.92050 1.22187 0.96230 0.95692 0.95436 0.90085 1.22727 0.95973 0.99840 0.97074 1.20975 0.88283 0.90657 0.94358 1.44880 1.24643 1.43057 1.23035 1.19418 1.05810 1.12297 0.99889 0.90453 1.25648 0.97304 1.02117 1.00872 1.70179 1.14909 1.44026 1.30908 0.85162 0.77079 0.78764 0.78408 1.20196 1.21764 1.20489 1.21744 0.94372 0.94913 0.87889 1.21647 0.96463 1.01665 0.80473 0.93806 0.90798 0.89587 0.86256 0.88906 0.75193 0.88511 0.88524 0.87860 0.92425 0.90839 0.90373 0.89599 0.91598 0.97101 0.98128 0.94383 0.97103 0.94692 0.89919 0.91390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 9.89 71.98 0.71 -1.19 16 2 C -0.05 -0.80 6.38 29.85 0.19 -0.61 16 3 C 0.05 0.87 6.80 25.48 0.17 1.04 16 4 O 0.09 1.60 11.06 77.00 0.85 2.45 16 5 N -0.37 -6.78 12.01 -54.19 -0.65 -7.43 16 6 C 0.04 0.56 10.11 87.29 0.88 1.44 16 7 C -0.27 -5.36 5.46 -18.75 -0.10 -5.47 16 8 C 0.60 14.75 7.51 86.66 0.65 15.40 16 9 O -0.57 -19.04 15.76 -4.04 -0.06 -19.11 16 10 N -0.59 -12.16 2.97 -822.82 -2.45 -14.61 16 11 C 0.09 1.16 6.02 86.36 0.52 1.68 16 12 C -0.13 -1.56 6.08 30.67 0.19 -1.38 16 13 C -0.11 -1.84 5.04 30.62 0.15 -1.68 16 14 C -0.07 -1.73 1.85 -10.72 -0.02 -1.75 16 15 H 0.06 1.64 8.11 -2.39 -0.02 1.62 16 16 C -0.08 -2.40 2.56 -9.40 -0.02 -2.42 16 17 H 0.08 2.51 8.14 -2.38 -0.02 2.49 16 18 C -0.12 -4.13 5.58 31.79 0.18 -3.95 16 19 C 0.18 9.16 5.38 86.68 0.47 9.62 16 20 N -0.63 -33.64 3.40 -691.31 -2.35 -36.00 16 21 C -0.25 -14.34 10.28 84.04 0.86 -13.48 16 22 H 0.08 4.37 7.83 -2.91 -0.02 4.34 16 23 C -0.07 -3.91 5.49 84.86 0.47 -3.45 16 24 N -0.95 -58.63 10.33 21.65 0.22 -58.40 16 25 Si 0.98 47.07 29.55 68.60 2.03 49.10 16 26 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 27 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 28 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 29 C 0.14 5.72 5.73 86.85 0.50 6.22 16 30 C 0.12 2.90 5.39 86.36 0.47 3.37 16 31 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.09 0.94 8.14 -2.39 -0.02 0.93 16 34 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.09 1.78 7.34 -2.39 -0.02 1.76 16 36 H 0.23 1.75 7.66 -2.91 -0.02 1.73 16 37 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.10 0.99 4.38 -2.38 -0.01 0.98 16 39 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.07 1.24 7.45 -2.39 -0.02 1.22 16 42 H 0.08 1.14 8.14 -2.39 -0.02 1.13 16 43 H 0.09 2.56 8.11 -2.39 -0.02 2.54 16 44 H 0.07 2.17 8.01 -2.39 -0.02 2.15 16 45 H 0.01 0.60 7.39 -2.39 -0.02 0.59 16 46 H 0.00 0.03 7.52 -2.39 -0.02 0.01 16 47 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 48 H 0.01 0.48 8.04 -2.39 -0.02 0.46 16 49 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 50 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 51 H 0.07 2.10 6.45 -2.39 -0.02 2.08 16 Total: -1.00 -76.75 398.14 4.77 -71.98 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: 0.92 Total: 8.59 kcal Atomic # 6 Polarization: -2.84 SS G_CDS: 6.26 Total: 3.42 kcal Atomic # 7 Polarization: -111.21 SS G_CDS: -5.23 Total: -116.43 kcal Atomic # 8 Polarization: -17.44 SS G_CDS: 0.79 Total: -16.65 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 2.03 Total: 49.10 kcal Total: -76.75 4.77 -71.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961252967.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.735 kcal (2) G-P(sol) polarization free energy of solvation -76.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds