Wall clock time and date at job start Wed Apr 1 2020 05:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50694 * 109.46853 * 2 1 4 4 O 1.33494 * 126.83078 * 269.97637 * 3 2 1 5 5 N 1.20651 * 113.16121 * 180.02562 * 4 3 2 6 6 C 1.30022 * 112.30023 * 359.71361 * 5 4 3 7 7 C 1.37365 * 126.83086 * 89.99885 * 3 2 1 8 8 C 1.47392 * 128.56465 * 359.95888 * 7 3 2 9 9 O 1.21605 * 120.00079 * 327.66889 * 8 7 3 10 10 N 1.34775 * 120.00255 * 147.66878 * 8 7 3 11 11 C 1.46924 * 120.62960 * 354.83339 * 10 8 7 12 12 C 1.53188 * 108.77821 * 233.58830 * 11 10 8 13 13 C 1.53044 * 109.31579 * 305.36625 * 12 11 10 14 14 C 1.53045 * 109.53511 * 61.36165 * 13 12 11 15 15 H 1.08997 * 109.49380 * 58.58826 * 14 13 12 16 16 C 1.52994 * 109.49579 * 178.68672 * 14 13 12 17 17 H 1.09001 * 110.64465 * 61.52447 * 16 14 13 18 18 C 1.55157 * 110.72029 * 184.86369 * 16 14 13 19 19 C 1.54907 * 101.58089 * 153.86831 * 18 16 14 20 20 N 1.47425 * 104.83358 * 322.98836 * 19 18 16 21 21 C 1.36940 * 125.65336 * 204.16882 * 20 19 18 22 22 H 1.07997 * 120.00187 * 164.09472 * 21 20 19 23 23 C 1.38817 * 119.99625 * 344.09525 * 21 20 19 24 24 N 1.31619 * 119.99649 * 158.76744 * 23 21 20 25 25 Si 1.86801 * 119.99940 * 338.77336 * 23 21 20 26 26 H 1.48500 * 109.47331 * 84.77584 * 25 23 21 27 27 H 1.48503 * 109.46686 * 204.77725 * 25 23 21 28 28 H 1.48498 * 109.46993 * 324.77266 * 25 23 21 29 29 C 1.47023 * 108.70126 * 24.12959 * 20 19 18 30 30 C 1.46926 * 120.63516 * 174.81389 * 10 8 7 31 31 H 1.08998 * 109.47542 * 60.00035 * 1 2 3 32 32 H 1.09000 * 109.47117 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47395 * 300.00032 * 1 2 3 34 34 H 1.08993 * 109.47304 * 240.00189 * 2 1 3 35 35 H 1.09003 * 109.46918 * 119.99642 * 2 1 3 36 36 H 1.08002 * 127.33408 * 180.31018 * 6 5 4 37 37 H 1.09001 * 109.58716 * 353.37796 * 11 10 8 38 38 H 1.09003 * 109.58896 * 113.79994 * 11 10 8 39 39 H 1.09004 * 109.49772 * 65.31932 * 12 11 10 40 40 H 1.09002 * 109.49846 * 185.38041 * 12 11 10 41 41 H 1.08993 * 109.46115 * 181.38388 * 13 12 11 42 42 H 1.09004 * 109.45499 * 301.35895 * 13 12 11 43 43 H 1.09003 * 111.00229 * 271.93875 * 18 16 14 44 44 H 1.08992 * 111.00587 * 35.79235 * 18 16 14 45 45 H 1.09006 * 110.36503 * 204.15406 * 19 18 16 46 46 H 1.08993 * 110.46681 * 81.87935 * 19 18 16 47 47 H 0.97007 * 119.99764 * 180.02562 * 24 23 21 48 48 H 1.08997 * 109.88284 * 239.52594 * 29 20 19 49 49 H 1.09007 * 110.00800 * 118.43164 * 29 20 19 50 50 H 1.08998 * 109.58827 * 246.20458 * 30 10 8 51 51 H 1.09007 * 109.58236 * 6.62492 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2994 2.1751 -1.0685 5 7 2.6905 3.2803 -0.7834 6 6 2.7497 3.4663 0.5021 7 6 2.3067 2.1972 1.0995 8 6 2.1820 1.8470 2.5258 9 8 1.3123 1.0789 2.8895 10 7 3.0319 2.3782 3.4269 11 6 4.1564 3.2175 2.9912 12 6 5.4512 2.6545 3.5856 13 6 5.3033 2.5409 5.1046 14 6 4.1607 1.5785 5.4371 15 1 4.3679 0.6025 4.9983 16 6 4.0350 1.4403 6.9555 17 1 3.7995 2.4023 7.4108 18 6 2.9657 0.3780 7.3234 19 6 3.4571 -0.0885 8.7164 20 7 4.9281 -0.0857 8.6181 21 6 5.7808 -0.8338 9.3852 22 1 6.8086 -0.9637 9.0802 23 6 5.3239 -1.4253 10.5550 24 7 5.9675 -2.4526 11.0678 25 14 3.7958 -0.7634 11.4013 26 1 2.5876 -1.3690 10.7859 27 1 3.8414 -1.1075 12.8452 28 1 3.7438 0.7125 11.2455 29 6 5.3280 0.8527 7.5593 30 6 2.8514 2.1294 4.8636 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 3.0600 4.3614 1.0208 37 1 4.2194 3.2078 1.9030 38 1 4.0073 4.2389 3.3415 39 1 5.6462 1.6683 3.1643 40 1 6.2802 3.3216 3.3491 41 1 6.2320 2.1637 5.5326 42 1 5.0836 3.5234 5.5225 43 1 1.9748 0.8276 7.3891 44 1 2.9724 -0.4463 6.6105 45 1 3.0932 -1.0936 8.9300 46 1 3.1273 0.6057 9.4891 47 1 5.6481 -2.8661 11.8851 48 1 5.8901 0.3247 6.7890 49 1 5.9374 1.6524 7.9803 50 1 2.5958 3.0620 5.3667 51 1 2.0532 1.4017 5.0109 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961252968.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:39:43 Heat of formation + Delta-G solvation = 47.969789 kcal Electronic energy + Delta-G solvation = -31495.317197 eV Core-core repulsion = 27398.550543 eV Total energy + Delta-G solvation = -4096.766654 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -45.31979 -40.48681 -38.57918 -37.00232 -35.07833 -34.43797 -33.45377 -32.43347 -31.49006 -30.66746 -29.27874 -28.06008 -26.31908 -24.96246 -24.38018 -23.97779 -23.04111 -22.04581 -20.88152 -20.70777 -19.54660 -19.27308 -18.21244 -17.86582 -17.02320 -16.84692 -16.31511 -15.74801 -15.23301 -15.12527 -14.88455 -14.66676 -14.44951 -14.22317 -13.94989 -13.74874 -13.48497 -13.40072 -13.17086 -12.98334 -12.78251 -12.62788 -12.26726 -12.15559 -11.90356 -11.75430 -11.56114 -11.44918 -11.34051 -11.17509 -11.00418 -10.97761 -10.73836 -10.63220 -10.46376 -10.22951 -10.16541 -9.90047 -9.82688 -9.79387 -9.34433 -8.86601 -8.68568 -7.01068 -5.90471 -3.19883 0.75129 1.38849 2.35647 2.55833 2.85849 3.36997 3.49570 3.51665 3.76835 3.89968 4.19605 4.40559 4.46895 4.57648 4.64727 4.69372 4.76921 4.78964 4.80974 4.91136 4.95976 5.03675 5.13903 5.23527 5.28070 5.33509 5.38349 5.41998 5.48214 5.48879 5.58108 5.62060 5.63079 5.64448 5.81976 5.84092 5.87275 5.88948 6.00986 6.14343 6.18951 6.22711 6.35963 6.38513 6.56779 6.66463 6.81997 6.83547 7.06949 7.73991 7.74554 7.84474 8.34522 8.87199 9.72947 10.22045 11.25903 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019023 B = 0.002431 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.564486 B =11517.450589 C =12242.484913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.046 4.046 3 C 0.048 3.952 4 O 0.093 5.907 5 N -0.354 5.354 6 C 0.019 3.981 7 C -0.258 4.258 8 C 0.597 3.403 9 O -0.527 6.527 10 N -0.600 5.600 11 C 0.097 3.903 12 C -0.134 4.134 13 C -0.118 4.118 14 C -0.087 4.087 15 H 0.078 0.922 16 C -0.094 4.094 17 H 0.075 0.925 18 C -0.126 4.126 19 C 0.105 3.895 20 N -0.611 5.611 21 C -0.239 4.239 22 H 0.092 0.908 23 C 0.018 3.982 24 N -0.913 5.913 25 Si 0.887 3.113 26 H -0.286 1.286 27 H -0.304 1.304 28 H -0.276 1.276 29 C 0.145 3.855 30 C 0.118 3.882 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.091 0.909 35 H 0.105 0.895 36 H 0.202 0.798 37 H 0.087 0.913 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.070 0.930 45 H 0.058 0.942 46 H 0.027 0.973 47 H 0.262 0.738 48 H 0.032 0.968 49 H 0.028 0.972 50 H 0.070 0.930 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.711 12.691 -24.321 28.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.084 4.084 3 C -0.016 4.016 4 O 0.033 5.967 5 N -0.059 5.059 6 C -0.163 4.163 7 C -0.265 4.265 8 C 0.385 3.615 9 O -0.404 6.404 10 N -0.333 5.333 11 C -0.026 4.026 12 C -0.172 4.172 13 C -0.155 4.155 14 C -0.106 4.106 15 H 0.096 0.904 16 C -0.114 4.114 17 H 0.093 0.907 18 C -0.165 4.165 19 C -0.020 4.020 20 N -0.338 5.338 21 C -0.366 4.366 22 H 0.110 0.890 23 C -0.180 4.180 24 N -0.557 5.557 25 Si 0.718 3.282 26 H -0.213 1.213 27 H -0.232 1.232 28 H -0.202 1.202 29 C 0.020 3.980 30 C -0.003 4.003 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.110 0.890 35 H 0.123 0.877 36 H 0.219 0.781 37 H 0.105 0.895 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.095 0.905 41 H 0.094 0.906 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.089 0.911 45 H 0.076 0.924 46 H 0.044 0.956 47 H 0.072 0.928 48 H 0.050 0.950 49 H 0.046 0.954 50 H 0.088 0.912 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -7.817 12.863 -25.020 29.199 hybrid contribution -0.687 0.349 1.499 1.685 sum -8.504 13.212 -23.521 28.286 Atomic orbital electron populations 1.21747 0.92494 1.03244 1.03027 1.20310 0.97597 0.85292 1.05182 1.24896 0.95387 0.96279 0.85045 1.84572 1.61247 1.17587 1.33306 1.73680 1.16240 0.98517 1.17437 1.26461 1.01040 0.99391 0.89416 1.22061 1.13468 0.95588 0.95400 1.16836 0.81465 0.80136 0.83089 1.90821 1.34806 1.34926 1.79839 1.47898 1.27953 1.50330 1.07103 1.22091 0.86049 0.94183 1.00284 1.21923 0.96463 1.02016 0.96837 1.21626 0.99451 0.99769 0.94666 1.21502 0.94053 0.99654 0.95440 0.90374 1.22167 0.97299 0.98855 0.93038 0.90659 1.22802 0.97164 0.98204 0.98299 1.22013 0.85867 0.99504 0.94600 1.44797 1.00551 1.47714 1.40727 1.18661 0.94238 1.22549 1.01180 0.89034 1.24938 0.97847 0.97705 0.97541 1.69835 1.42044 1.21136 1.22697 0.86967 0.83632 0.79460 0.78150 1.21282 1.23248 1.20240 1.21311 0.93704 0.91905 0.91081 1.21787 0.99049 1.01638 0.77871 0.92391 0.90902 0.91045 0.89007 0.87685 0.78109 0.89519 0.90969 0.91383 0.90542 0.90643 0.91681 0.91726 0.91111 0.92364 0.95570 0.92788 0.95027 0.95419 0.91217 0.88417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.89 37.16 0.37 -0.66 16 2 C -0.05 -0.33 6.02 -27.88 -0.17 -0.49 16 3 C 0.05 0.43 6.80 -34.63 -0.24 0.19 16 4 O 0.09 0.88 11.06 18.65 0.21 1.08 16 5 N -0.35 -3.45 12.01 31.81 0.38 -3.06 16 6 C 0.02 0.16 10.02 -14.72 -0.15 0.01 16 7 C -0.26 -2.50 5.68 -102.89 -0.58 -3.09 16 8 C 0.60 6.88 7.57 -12.53 -0.09 6.78 16 9 O -0.53 -7.55 15.53 5.27 0.08 -7.47 16 10 N -0.60 -6.03 2.97 -174.05 -0.52 -6.54 16 11 C 0.10 0.71 5.52 -3.71 -0.02 0.69 16 12 C -0.13 -1.06 6.08 -26.61 -0.16 -1.23 16 13 C -0.12 -1.16 4.98 -26.69 -0.13 -1.29 16 14 C -0.09 -1.03 1.71 -90.50 -0.15 -1.19 16 15 H 0.08 1.06 8.13 -51.93 -0.42 0.64 16 16 C -0.09 -1.40 2.49 -88.79 -0.22 -1.62 16 17 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 18 C -0.13 -2.10 5.73 -24.58 -0.14 -2.24 16 19 C 0.11 2.31 4.68 -2.53 -0.01 2.29 16 20 N -0.61 -14.87 3.24 -170.07 -0.55 -15.43 16 21 C -0.24 -6.87 10.60 -15.06 -0.16 -7.03 16 22 H 0.09 2.77 8.06 -52.49 -0.42 2.35 16 23 C 0.02 0.52 5.45 -17.43 -0.09 0.42 16 24 N -0.91 -28.56 13.97 55.49 0.78 -27.78 16 25 Si 0.89 23.00 24.23 -169.99 -4.12 18.88 16 26 H -0.29 -7.14 6.41 56.52 0.36 -6.78 16 27 H -0.30 -7.98 7.11 56.52 0.40 -7.58 16 28 H -0.28 -7.02 6.42 56.52 0.36 -6.66 16 29 C 0.15 2.78 5.84 -3.06 -0.02 2.76 16 30 C 0.12 1.30 5.46 -3.71 -0.02 1.28 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.65 7.93 -51.93 -0.41 0.24 16 34 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.10 0.85 7.77 -51.93 -0.40 0.45 16 36 H 0.20 1.05 7.06 -52.49 -0.37 0.68 16 37 H 0.09 0.56 4.32 -51.93 -0.22 0.34 16 38 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.07 0.82 7.12 -51.93 -0.37 0.45 16 42 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 44 H 0.07 1.18 8.04 -51.93 -0.42 0.76 16 45 H 0.06 1.38 6.23 -51.93 -0.32 1.06 16 46 H 0.03 0.60 5.54 -51.93 -0.29 0.31 16 47 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 48 H 0.03 0.60 7.57 -51.93 -0.39 0.21 16 49 H 0.03 0.53 8.14 -51.92 -0.42 0.11 16 50 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 51 H 0.10 1.24 6.50 -51.93 -0.34 0.91 16 LS Contribution 389.62 15.07 5.87 5.87 Total: -1.00 -34.04 389.62 -8.12 -42.16 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: -8.25 Total: -3.30 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: -2.00 Total: -4.41 kcal Atomic # 7 Polarization: -52.90 SS G_CDS: 0.09 Total: -52.82 kcal Atomic # 8 Polarization: -6.68 SS G_CDS: 0.29 Total: -6.39 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -4.12 Total: 18.88 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.04 -8.12 -42.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961252968.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.131 kcal (2) G-P(sol) polarization free energy of solvation -34.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds