Wall clock time and date at job start Wed Apr 1 2020 05:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50694 * 109.46853 * 2 1 4 4 O 1.33494 * 126.83078 * 269.97637 * 3 2 1 5 5 N 1.20651 * 113.16121 * 180.02562 * 4 3 2 6 6 C 1.30022 * 112.30023 * 359.71361 * 5 4 3 7 7 C 1.37365 * 126.83086 * 89.99885 * 3 2 1 8 8 C 1.47392 * 128.56465 * 359.95888 * 7 3 2 9 9 O 1.21605 * 120.00079 * 327.66889 * 8 7 3 10 10 N 1.34775 * 120.00255 * 147.66878 * 8 7 3 11 11 C 1.46924 * 120.62960 * 354.83339 * 10 8 7 12 12 C 1.53188 * 108.77821 * 233.58830 * 11 10 8 13 13 C 1.53044 * 109.31579 * 305.36625 * 12 11 10 14 14 C 1.53045 * 109.53511 * 61.36165 * 13 12 11 15 15 H 1.08997 * 109.49380 * 58.58826 * 14 13 12 16 16 C 1.52994 * 109.49579 * 178.68672 * 14 13 12 17 17 H 1.09001 * 110.64465 * 61.52447 * 16 14 13 18 18 C 1.55157 * 110.72029 * 184.86369 * 16 14 13 19 19 C 1.54907 * 101.58089 * 153.86831 * 18 16 14 20 20 N 1.47425 * 104.83358 * 322.98836 * 19 18 16 21 21 C 1.36940 * 125.65336 * 204.16882 * 20 19 18 22 22 H 1.07997 * 120.00187 * 164.09472 * 21 20 19 23 23 C 1.38817 * 119.99625 * 344.09525 * 21 20 19 24 24 N 1.31619 * 119.99649 * 158.76744 * 23 21 20 25 25 Si 1.86801 * 119.99940 * 338.77336 * 23 21 20 26 26 H 1.48500 * 109.47331 * 84.77584 * 25 23 21 27 27 H 1.48503 * 109.46686 * 204.77725 * 25 23 21 28 28 H 1.48498 * 109.46993 * 324.77266 * 25 23 21 29 29 C 1.47023 * 108.70126 * 24.12959 * 20 19 18 30 30 C 1.46926 * 120.63516 * 174.81389 * 10 8 7 31 31 H 1.08998 * 109.47542 * 60.00035 * 1 2 3 32 32 H 1.09000 * 109.47117 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47395 * 300.00032 * 1 2 3 34 34 H 1.08993 * 109.47304 * 240.00189 * 2 1 3 35 35 H 1.09003 * 109.46918 * 119.99642 * 2 1 3 36 36 H 1.08002 * 127.33408 * 180.31018 * 6 5 4 37 37 H 1.09001 * 109.58716 * 353.37796 * 11 10 8 38 38 H 1.09003 * 109.58896 * 113.79994 * 11 10 8 39 39 H 1.09004 * 109.49772 * 65.31932 * 12 11 10 40 40 H 1.09002 * 109.49846 * 185.38041 * 12 11 10 41 41 H 1.08993 * 109.46115 * 181.38388 * 13 12 11 42 42 H 1.09004 * 109.45499 * 301.35895 * 13 12 11 43 43 H 1.09003 * 111.00229 * 271.93875 * 18 16 14 44 44 H 1.08992 * 111.00587 * 35.79235 * 18 16 14 45 45 H 1.09006 * 110.36503 * 204.15406 * 19 18 16 46 46 H 1.08993 * 110.46681 * 81.87935 * 19 18 16 47 47 H 0.97007 * 119.99764 * 180.02562 * 24 23 21 48 48 H 1.08997 * 109.88284 * 239.52594 * 29 20 19 49 49 H 1.09007 * 110.00800 * 118.43164 * 29 20 19 50 50 H 1.08998 * 109.58827 * 246.20458 * 30 10 8 51 51 H 1.09007 * 109.58236 * 6.62492 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2994 2.1751 -1.0685 5 7 2.6905 3.2803 -0.7834 6 6 2.7497 3.4663 0.5021 7 6 2.3067 2.1972 1.0995 8 6 2.1820 1.8470 2.5258 9 8 1.3123 1.0789 2.8895 10 7 3.0319 2.3782 3.4269 11 6 4.1564 3.2175 2.9912 12 6 5.4512 2.6545 3.5856 13 6 5.3033 2.5409 5.1046 14 6 4.1607 1.5785 5.4371 15 1 4.3679 0.6025 4.9983 16 6 4.0350 1.4403 6.9555 17 1 3.7995 2.4023 7.4108 18 6 2.9657 0.3780 7.3234 19 6 3.4571 -0.0885 8.7164 20 7 4.9281 -0.0857 8.6181 21 6 5.7808 -0.8338 9.3852 22 1 6.8086 -0.9637 9.0802 23 6 5.3239 -1.4253 10.5550 24 7 5.9675 -2.4526 11.0678 25 14 3.7958 -0.7634 11.4013 26 1 2.5876 -1.3690 10.7859 27 1 3.8414 -1.1075 12.8452 28 1 3.7438 0.7125 11.2455 29 6 5.3280 0.8527 7.5593 30 6 2.8514 2.1294 4.8636 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 3.0600 4.3614 1.0208 37 1 4.2194 3.2078 1.9030 38 1 4.0073 4.2389 3.3415 39 1 5.6462 1.6683 3.1643 40 1 6.2802 3.3216 3.3491 41 1 6.2320 2.1637 5.5326 42 1 5.0836 3.5234 5.5225 43 1 1.9748 0.8276 7.3891 44 1 2.9724 -0.4463 6.6105 45 1 3.0932 -1.0936 8.9300 46 1 3.1273 0.6057 9.4891 47 1 5.6481 -2.8661 11.8851 48 1 5.8901 0.3247 6.7890 49 1 5.9374 1.6524 7.9803 50 1 2.5958 3.0620 5.3667 51 1 2.0532 1.4017 5.0109 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961252968.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:39:42 Heat of formation + Delta-G solvation = 26.633021 kcal Electronic energy + Delta-G solvation = -31496.242429 eV Core-core repulsion = 27398.550543 eV Total energy + Delta-G solvation = -4097.691886 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -45.98490 -41.34795 -39.83505 -38.13865 -35.71086 -35.45654 -34.64744 -33.73021 -32.79472 -31.38658 -30.81346 -29.45376 -27.12619 -26.41712 -25.08666 -24.93762 -24.06671 -22.89411 -22.30759 -21.82340 -20.77087 -20.03773 -18.98516 -18.84165 -18.56000 -17.68559 -17.28898 -17.04093 -16.87724 -16.11011 -15.70428 -15.56178 -15.40197 -15.36635 -14.92551 -14.84445 -14.58092 -14.47371 -14.17632 -14.01126 -13.92149 -13.80590 -13.57033 -13.26521 -13.05384 -12.88745 -12.74966 -12.57558 -12.47633 -12.24609 -12.08427 -12.01705 -11.92167 -11.79604 -11.64902 -11.49311 -11.40048 -11.33296 -11.11321 -10.93963 -10.83771 -10.52230 -9.65395 -9.06181 -8.18358 -5.43907 0.04461 0.74165 1.29355 1.36746 1.45955 1.63992 1.79618 2.11434 2.40486 3.04017 3.15885 3.27068 3.34015 3.49214 3.60975 3.72903 3.82881 3.83436 4.02561 4.05844 4.12165 4.17514 4.24162 4.29074 4.35563 4.38816 4.44727 4.55210 4.60685 4.69002 4.70880 4.76255 4.78490 4.83012 4.86136 4.89599 4.95636 4.97832 5.02272 5.05683 5.12888 5.17152 5.22116 5.30828 5.34877 5.40784 5.51005 5.55487 5.66322 6.08969 6.29522 6.76419 7.00640 7.10227 7.54286 8.10921 9.01690 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019023 B = 0.002431 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.564486 B =11517.450589 C =12242.484913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.047 4.047 3 C 0.052 3.948 4 O 0.086 5.914 5 N -0.373 5.373 6 C 0.036 3.964 7 C -0.276 4.276 8 C 0.595 3.405 9 O -0.564 6.564 10 N -0.598 5.598 11 C 0.095 3.905 12 C -0.129 4.129 13 C -0.116 4.116 14 C -0.076 4.076 15 H 0.055 0.945 16 C -0.077 4.077 17 H 0.098 0.902 18 C -0.115 4.115 19 C 0.096 3.904 20 N -0.632 5.632 21 C -0.233 4.233 22 H 0.059 0.941 23 C -0.044 4.044 24 N -0.961 5.961 25 Si 0.952 3.048 26 H -0.272 1.272 27 H -0.309 1.309 28 H -0.264 1.264 29 C 0.141 3.859 30 C 0.122 3.878 31 H 0.066 0.934 32 H 0.085 0.915 33 H 0.046 0.954 34 H 0.117 0.883 35 H 0.092 0.908 36 H 0.233 0.767 37 H 0.097 0.903 38 H 0.101 0.899 39 H 0.051 0.949 40 H 0.100 0.900 41 H 0.060 0.940 42 H 0.084 0.916 43 H 0.097 0.903 44 H 0.064 0.936 45 H 0.034 0.966 46 H 0.029 0.971 47 H 0.262 0.738 48 H 0.026 0.974 49 H 0.031 0.969 50 H 0.092 0.908 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.018 15.790 -26.050 31.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.085 4.085 3 C -0.013 4.013 4 O 0.029 5.971 5 N -0.081 5.081 6 C -0.146 4.146 7 C -0.284 4.284 8 C 0.383 3.617 9 O -0.444 6.444 10 N -0.329 5.329 11 C -0.027 4.027 12 C -0.168 4.168 13 C -0.154 4.154 14 C -0.096 4.096 15 H 0.073 0.927 16 C -0.097 4.097 17 H 0.116 0.884 18 C -0.153 4.153 19 C -0.028 4.028 20 N -0.359 5.359 21 C -0.362 4.362 22 H 0.076 0.924 23 C -0.237 4.237 24 N -0.608 5.608 25 Si 0.780 3.220 26 H -0.199 1.199 27 H -0.238 1.238 28 H -0.189 1.189 29 C 0.016 3.984 30 C 0.000 4.000 31 H 0.085 0.915 32 H 0.104 0.896 33 H 0.065 0.935 34 H 0.135 0.865 35 H 0.111 0.889 36 H 0.249 0.751 37 H 0.115 0.885 38 H 0.119 0.881 39 H 0.070 0.930 40 H 0.118 0.882 41 H 0.079 0.921 42 H 0.103 0.897 43 H 0.115 0.885 44 H 0.083 0.917 45 H 0.052 0.948 46 H 0.047 0.953 47 H 0.071 0.929 48 H 0.044 0.956 49 H 0.049 0.951 50 H 0.110 0.890 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -9.125 15.998 -26.803 32.521 hybrid contribution -0.176 -0.650 1.963 2.076 sum -9.301 15.348 -24.840 30.644 Atomic orbital electron populations 1.21705 0.92307 1.03853 1.02196 1.20392 0.97657 0.84629 1.05779 1.25211 0.94333 0.96748 0.84963 1.84567 1.61559 1.17681 1.33335 1.73676 1.17368 0.98786 1.18237 1.26899 0.99357 0.99549 0.88802 1.22012 1.14943 0.96751 0.94664 1.17064 0.81169 0.79628 0.83828 1.90801 1.36459 1.36651 1.80503 1.47960 1.28286 1.50139 1.06519 1.22328 0.84437 0.94908 1.01004 1.21894 0.97776 1.01897 0.95184 1.21614 0.97669 0.99857 0.96214 1.21343 0.95800 0.99425 0.93019 0.92661 1.22100 0.93819 0.98794 0.94956 0.88402 1.22753 0.99177 0.98705 0.94683 1.22140 0.84410 0.98399 0.97894 1.44955 1.01508 1.48480 1.40935 1.18625 0.93707 1.22345 1.01528 0.92352 1.25623 1.01615 0.98014 0.98488 1.69969 1.44637 1.22822 1.23401 0.85918 0.80360 0.79311 0.76367 1.19855 1.23801 1.18910 1.21509 0.96174 0.91079 0.89614 1.21669 0.97485 1.02110 0.78711 0.91468 0.89630 0.93490 0.86503 0.88924 0.75069 0.88513 0.88069 0.93015 0.88163 0.92105 0.89746 0.88463 0.91696 0.94805 0.95331 0.92939 0.95605 0.95084 0.88974 0.90303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 9.89 71.98 0.71 -1.18 16 2 C -0.05 -0.63 6.02 29.85 0.18 -0.45 16 3 C 0.05 0.86 6.80 25.48 0.17 1.04 16 4 O 0.09 1.48 11.06 76.99 0.85 2.33 16 5 N -0.37 -6.49 12.01 -54.19 -0.65 -7.14 16 6 C 0.04 0.49 10.02 87.29 0.87 1.37 16 7 C -0.28 -4.90 5.68 -18.75 -0.11 -5.01 16 8 C 0.59 12.84 7.57 86.65 0.66 13.50 16 9 O -0.56 -16.01 15.53 -4.05 -0.06 -16.08 16 10 N -0.60 -10.42 2.97 -822.83 -2.45 -12.87 16 11 C 0.09 1.01 5.52 86.36 0.48 1.49 16 12 C -0.13 -1.64 6.08 30.67 0.19 -1.45 16 13 C -0.12 -1.94 4.98 30.62 0.15 -1.79 16 14 C -0.08 -1.64 1.71 -10.72 -0.02 -1.66 16 15 H 0.05 1.46 8.13 -2.39 -0.02 1.44 16 16 C -0.08 -2.11 2.49 -9.61 -0.02 -2.13 16 17 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 18 C -0.12 -3.59 5.73 31.99 0.18 -3.41 16 19 C 0.10 4.10 4.68 86.85 0.41 4.51 16 20 N -0.63 -30.86 3.24 -691.98 -2.24 -33.11 16 21 C -0.23 -13.83 10.60 84.03 0.89 -12.93 16 22 H 0.06 3.74 8.06 -2.91 -0.02 3.71 16 23 C -0.04 -2.65 5.45 84.86 0.46 -2.18 16 24 N -0.96 -62.30 13.97 21.65 0.30 -61.99 16 25 Si 0.95 48.14 24.23 68.60 1.66 49.80 16 26 H -0.27 -13.06 6.41 99.48 0.64 -12.42 16 27 H -0.31 -15.77 7.11 99.48 0.71 -15.06 16 28 H -0.26 -12.67 6.42 99.48 0.64 -12.03 16 29 C 0.14 5.28 5.84 86.73 0.51 5.78 16 30 C 0.12 2.34 5.46 86.36 0.47 2.81 16 31 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.05 0.86 7.93 -2.39 -0.02 0.84 16 34 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.09 1.50 7.77 -2.39 -0.02 1.48 16 36 H 0.23 1.41 7.06 -2.91 -0.02 1.39 16 37 H 0.10 0.88 4.32 -2.39 -0.01 0.87 16 38 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 40 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.06 1.21 7.12 -2.39 -0.02 1.20 16 42 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 43 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 44 H 0.06 2.10 8.04 -2.39 -0.02 2.08 16 45 H 0.03 1.60 6.23 -2.38 -0.01 1.58 16 46 H 0.03 1.23 5.54 -2.39 -0.01 1.22 16 47 H 0.26 16.09 8.31 -92.70 -0.77 15.32 16 48 H 0.03 0.99 7.57 -2.39 -0.02 0.98 16 49 H 0.03 1.15 8.14 -2.38 -0.02 1.13 16 50 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 51 H 0.08 1.86 6.50 -2.38 -0.02 1.84 16 Total: -1.00 -77.58 389.62 4.39 -73.20 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: 0.79 Total: 7.54 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: 6.18 Total: -1.69 kcal Atomic # 7 Polarization: -110.07 SS G_CDS: -5.04 Total: -115.11 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: 0.79 Total: -13.74 kcal Atomic # 14 Polarization: 48.14 SS G_CDS: 1.66 Total: 49.80 kcal Total: -77.58 4.39 -73.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961252968.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.831 kcal (2) G-P(sol) polarization free energy of solvation -77.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds